Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 PROM1-201ENST00000447510 3977 ntAPPRIS P3 TSL 1 (best) BASIC6.16□□□□□ -1.42
BDNFP23560 AL354733.2-209ENST00000589233 1434 ntTSL 2 BASIC6.16□□□□□ -1.42
BDNFP23560 ALB-209ENST00000503124 1741 ntTSL 5 BASIC6.16□□□□□ -1.42
BDNFP23560 LZTFL1-215ENST00000536047 4342 ntTSL 2 BASIC6.16□□□□□ -1.42
BDNFP23560 NLRP3P1-201ENST00000622303 1785 ntBASIC6.16□□□□□ -1.42
BDNFP23560 UGT2B15-201ENST00000338206 2077 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
BDNFP23560 TRIM22-201ENST00000379965 2989 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
BDNFP23560 NBPF20-205ENST00000622803 3689 ntTSL 5 BASIC6.16□□□□□ -1.42
BDNFP23560 NOL8-214ENST00000535387 3390 ntAPPRIS ALT2 TSL 5 BASIC6.16□□□□□ -1.42
BDNFP23560 ORC3-202ENST00000392844 2512 ntAPPRIS ALT1 TSL 1 (best) BASIC6.16□□□□□ -1.42
BDNFP23560 SMAP1-206ENST00000619054 3150 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
BDNFP23560 USMG5-201ENST00000309579 364 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
BDNFP23560 RNA5SP394-201ENST00000364216 119 ntBASIC6.16□□□□□ -1.42
BDNFP23560 RNU6-304P-201ENST00000364855 107 ntBASIC6.16□□□□□ -1.42
BDNFP23560 RBMS3-AS2-201ENST00000366321 582 ntTSL 3 BASIC6.16□□□□□ -1.42
BDNFP23560 SSX1-201ENST00000376919 1298 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
BDNFP23560 TYRP1-201ENST00000381136 872 ntTSL 2 BASIC6.16□□□□□ -1.42
BDNFP23560 RNU4-31P-201ENST00000384211 141 ntBASIC6.16□□□□□ -1.42
BDNFP23560 AC087752.1-201ENST00000391360 558 ntBASIC6.16□□□□□ -1.42
BDNFP23560 AL590867.1-201ENST00000392385 1212 ntTSL 2 BASIC6.16□□□□□ -1.42
BDNFP23560 AC092642.1-201ENST00000392417 425 ntBASIC6.16□□□□□ -1.42
BDNFP23560 AC093719.1-202ENST00000392735 373 ntBASIC6.16□□□□□ -1.42
BDNFP23560 NPM1P10-201ENST00000398310 865 ntBASIC6.16□□□□□ -1.42
BDNFP23560 AL391422.1-201ENST00000402155 436 ntBASIC6.16□□□□□ -1.42
BDNFP23560 HMGB1P20-201ENST00000402555 677 ntBASIC6.16□□□□□ -1.42
BDNFP23560 AC011752.1-203ENST00000417609 582 ntTSL 2 BASIC6.16□□□□□ -1.42
BDNFP23560 NDUFA5P10-201ENST00000432147 357 ntBASIC6.16□□□□□ -1.42
BDNFP23560 AL353597.2-202ENST00000434901 373 ntBASIC6.16□□□□□ -1.42
BDNFP23560 AL109807.1-201ENST00000438222 569 ntTSL 3 BASIC6.16□□□□□ -1.42
BDNFP23560 AC017074.2-201ENST00000439382 607 ntTSL 2 BASIC6.16□□□□□ -1.42
BDNFP23560 CASP12-206ENST00000446862 1196 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
BDNFP23560 PPIAP20-201ENST00000449839 135 ntBASIC6.16□□□□□ -1.42
BDNFP23560 HGF-207ENST00000453018 721 ntTSL 3 BASIC6.16□□□□□ -1.42
BDNFP23560 SLC25A51P1-201ENST00000468432 871 ntBASIC6.16□□□□□ -1.42
BDNFP23560 AC245041.2-201ENST00000479781 376 ntTSL 5 BASIC6.16□□□□□ -1.42
BDNFP23560 EFCAB10-203ENST00000480514 740 ntAPPRIS ALT1 TSL 1 (best) BASIC6.16□□□□□ -1.42
BDNFP23560 RN7SL273P-201ENST00000481561 299 ntBASIC6.16□□□□□ -1.42
BDNFP23560 LINC02006-201ENST00000488210 524 ntTSL 4 BASIC6.16□□□□□ -1.42
BDNFP23560 HMGB1P3-201ENST00000502802 616 ntBASIC6.16□□□□□ -1.42
BDNFP23560 SERF1B-203ENST00000503931 569 ntTSL 4 BASIC6.16□□□□□ -1.42
BDNFP23560 SERF1A-204ENST00000504458 569 ntTSL 4 BASIC6.16□□□□□ -1.42
BDNFP23560 AL049544.1-201ENST00000511849 673 ntTSL 3 BASIC6.16□□□□□ -1.42
BDNFP23560 LINC01060-205ENST00000512839 716 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
BDNFP23560 CYCSP22-201ENST00000517555 339 ntBASIC6.16□□□□□ -1.42
BDNFP23560 AC009563.1-202ENST00000523365 643 ntTSL 3 BASIC6.16□□□□□ -1.42
BDNFP23560 AP003031.2-202ENST00000533590 572 ntTSL 4 BASIC6.16□□□□□ -1.42
BDNFP23560 RERGL-202ENST00000536890 367 ntTSL 3 BASIC6.16□□□□□ -1.42
BDNFP23560 AC244502.2-201ENST00000543361 851 ntBASIC6.16□□□□□ -1.42
BDNFP23560 AP002518.2-201ENST00000544925 393 ntTSL 5 BASIC6.16□□□□□ -1.42
BDNFP23560 AL049779.3-201ENST00000557141 606 ntBASIC6.16□□□□□ -1.42
BDNFP23560 AC068722.1-202ENST00000559600 655 ntTSL 3 BASIC6.16□□□□□ -1.42
BDNFP23560 AC006272.2-201ENST00000594725 163 ntBASIC6.16□□□□□ -1.42
BDNFP23560 AL049844.2-201ENST00000604280 628 ntBASIC6.16□□□□□ -1.42
BDNFP23560 RN7SL787P-201ENST00000613000 284 ntBASIC6.16□□□□□ -1.42
BDNFP23560 AC020658.4-201ENST00000613987 684 ntBASIC6.16□□□□□ -1.42
BDNFP23560 C1orf195-202ENST00000625027 441 ntTSL 5 BASIC6.16□□□□□ -1.42
BDNFP23560 PCBP1-AS1-282ENST00000625783 826 ntTSL 5 BASIC6.16□□□□□ -1.42
BDNFP23560 PCDH15-202ENST00000361849 7017 ntTSL 5 BASIC6.16□□□□□ -1.42
BDNFP23560 PCDH15-205ENST00000373957 7032 ntTSL 5 BASIC6.16□□□□□ -1.42
BDNFP23560 BACH1-202ENST00000399921 5769 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
BDNFP23560 UGT2A1-206ENST00000514019 2376 ntTSL 2 BASIC6.16□□□□□ -1.42
BDNFP23560 ECT2L-205ENST00000541398 4483 ntAPPRIS P1 TSL 5 BASIC6.16□□□□□ -1.42
BDNFP23560 MRC1-201ENST00000569591 5198 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
BDNFP23560 ZNF300P1-202ENST00000520773 3115 ntTSL 5 BASIC6.16□□□□□ -1.42
BDNFP23560 PTPRD-214ENST00000540109 6210 ntAPPRIS P1 TSL 5 BASIC6.15□□□□□ -1.42
BDNFP23560 ZNF639-210ENST00000621687 1458 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
BDNFP23560 OR2M3-202ENST00000641626 9913 ntAPPRIS P1 BASIC6.15□□□□□ -1.42
BDNFP23560 CLEC1B-204ENST00000428126 3054 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
BDNFP23560 LRRC37B-204ENST00000543378 3091 ntAPPRIS ALT2 TSL 2 BASIC6.15□□□□□ -1.42
BDNFP23560 CLEC4D-201ENST00000299665 1936 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
BDNFP23560 ZPLD1-201ENST00000306176 3619 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
BDNFP23560 BACH1-201ENST00000286800 5669 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
BDNFP23560 AL451142.2-201ENST00000429076 2090 ntBASIC6.15□□□□□ -1.42
BDNFP23560 OR13C1P-202ENST00000641378 2919 ntBASIC6.15□□□□□ -1.42
BDNFP23560 OR4N5-201ENST00000333629 927 ntAPPRIS P1 BASIC6.15□□□□□ -1.42
BDNFP23560 WFDC11-202ENST00000356562 642 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
BDNFP23560 MLIP-203ENST00000370877 1234 ntAPPRIS ALT2 TSL 5 BASIC6.15□□□□□ -1.42
BDNFP23560 AL034376.1-201ENST00000380106 484 ntTSL 2 BASIC6.15□□□□□ -1.42
BDNFP23560 AL512422.1-201ENST00000407033 553 ntBASIC6.15□□□□□ -1.42
BDNFP23560 RNA5SP178-201ENST00000410380 128 ntBASIC6.15□□□□□ -1.42
BDNFP23560 RPS20P25-201ENST00000412447 352 ntBASIC6.15□□□□□ -1.42
BDNFP23560 AC093155.2-201ENST00000420734 937 ntBASIC6.15□□□□□ -1.42
BDNFP23560 AL669841.1-201ENST00000425723 558 ntTSL 2 BASIC6.15□□□□□ -1.42
BDNFP23560 AC107057.1-201ENST00000425763 319 ntTSL 3 BASIC6.15□□□□□ -1.42
BDNFP23560 TRAPPC2P5-201ENST00000426293 308 ntBASIC6.15□□□□□ -1.42
BDNFP23560 HMGB3P24-201ENST00000433260 622 ntBASIC6.15□□□□□ -1.42
BDNFP23560 FMR1-IT1-201ENST00000441414 343 ntTSL 5 BASIC6.15□□□□□ -1.42
BDNFP23560 OSBPL10-AS1-205ENST00000444503 526 ntTSL 4 BASIC6.15□□□□□ -1.42
BDNFP23560 AKR1C2-203ENST00000455190 1098 ntTSL 2 BASIC6.15□□□□□ -1.42
BDNFP23560 RPS23P6-201ENST00000466136 431 ntBASIC6.15□□□□□ -1.42
BDNFP23560 RPS27AP16-201ENST00000492222 470 ntBASIC6.15□□□□□ -1.42
BDNFP23560 RN7SL101P-201ENST00000496350 279 ntBASIC6.15□□□□□ -1.42
BDNFP23560 MOSPD2-206ENST00000497603 775 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
BDNFP23560 LINC00903-201ENST00000497854 223 ntTSL 3 BASIC6.15□□□□□ -1.42
BDNFP23560 AC092916.1-201ENST00000497896 411 ntTSL 3 BASIC6.15□□□□□ -1.42
BDNFP23560 AC011396.3-201ENST00000508845 512 ntTSL 3 BASIC6.15□□□□□ -1.42
BDNFP23560 AC108471.1-201ENST00000513977 287 ntBASIC6.15□□□□□ -1.42
BDNFP23560 WDYHV1-203ENST00000518125 880 ntTSL 2 BASIC6.15□□□□□ -1.42
BDNFP23560 AC134511.1-201ENST00000535721 192 ntTSL 3 BASIC6.15□□□□□ -1.42
BDNFP23560 LINC01489-201ENST00000542689 605 ntTSL 5 BASIC6.15□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 97.6 ms