Protein–RNA interactions for Protein: P18858

LIG1, DNA ligase 1, humanhuman

Predictions only

Length 919 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1P18858 PLCE1-201ENST00000371375 6514 ntAPPRIS ALT2 TSL 1 (best) BASIC7.45□□□□□ -1.22
LIG1P18858 ESRRG-203ENST00000361395 5216 ntAPPRIS P1 TSL 1 (best) BASIC7.45□□□□□ -1.22
LIG1P18858 ESRRG-209ENST00000408911 5216 ntTSL 1 (best) BASIC7.45□□□□□ -1.22
LIG1P18858 RGS6-204ENST00000404301 1497 ntAPPRIS ALT1 TSL 1 (best) BASIC7.45□□□□□ -1.22
LIG1P18858 RGS6-206ENST00000407322 1497 ntAPPRIS ALT1 TSL 1 (best) BASIC7.45□□□□□ -1.22
LIG1P18858 DAPL1-201ENST00000309950 552 ntTSL 1 (best) BASIC7.45□□□□□ -1.22
LIG1P18858 SNORA70H-201ENST00000383910 135 ntBASIC7.45□□□□□ -1.22
LIG1P18858 RNU6-224P-201ENST00000384055 107 ntBASIC7.45□□□□□ -1.22
LIG1P18858 SNORA70J-201ENST00000384182 135 ntBASIC7.45□□□□□ -1.22
LIG1P18858 AL050335.1-201ENST00000396909 869 ntBASIC7.45□□□□□ -1.22
LIG1P18858 SERHL2-204ENST00000407614 521 ntTSL 1 (best) BASIC7.45□□□□□ -1.22
LIG1P18858 DAPL1-203ENST00000409042 544 ntTSL 4 BASIC7.45□□□□□ -1.22
LIG1P18858 RNA5SP155-201ENST00000411154 129 ntBASIC7.45□□□□□ -1.22
LIG1P18858 AL353651.1-201ENST00000415629 355 ntTSL 5 BASIC7.45□□□□□ -1.22
LIG1P18858 AL049712.1-201ENST00000418739 872 ntTSL 3 BASIC7.45□□□□□ -1.22
LIG1P18858 AL078590.2-202ENST00000422736 568 ntTSL 3 BASIC7.45□□□□□ -1.22
LIG1P18858 ZDHHC20P2-201ENST00000424108 429 ntBASIC7.45□□□□□ -1.22
LIG1P18858 AC124944.2-201ENST00000429866 1242 ntBASIC7.45□□□□□ -1.22
LIG1P18858 RPS10P21-201ENST00000430654 475 ntBASIC7.45□□□□□ -1.22
LIG1P18858 LINC01807-201ENST00000432481 676 ntTSL 3 BASIC7.45□□□□□ -1.22
LIG1P18858 AL589935.1-218ENST00000434683 529 ntTSL 3 BASIC7.45□□□□□ -1.22
LIG1P18858 AL022324.2-201ENST00000434827 780 ntBASIC7.45□□□□□ -1.22
LIG1P18858 RPEP4-201ENST00000437636 602 ntBASIC7.45□□□□□ -1.22
LIG1P18858 AC234771.4-201ENST00000441416 730 ntBASIC7.45□□□□□ -1.22
LIG1P18858 SNRPBP1-201ENST00000443634 282 ntBASIC7.45□□□□□ -1.22
LIG1P18858 LINC01828-201ENST00000445514 531 ntTSL 4 BASIC7.45□□□□□ -1.22
LIG1P18858 AC034228.3-201ENST00000446275 562 ntTSL 3 BASIC7.45□□□□□ -1.22
LIG1P18858 NPM1P9-201ENST00000453156 844 ntBASIC7.45□□□□□ -1.22
LIG1P18858 RPSAP37-201ENST00000470913 821 ntBASIC7.45□□□□□ -1.22
LIG1P18858 RPS3AP49-201ENST00000472161 790 ntBASIC7.45□□□□□ -1.22
LIG1P18858 AC104417.1-201ENST00000523974 751 ntBASIC7.45□□□□□ -1.22
LIG1P18858 AP001831.1-201ENST00000524610 411 ntTSL 3 BASIC7.45□□□□□ -1.22
LIG1P18858 AC090791.1-201ENST00000530960 492 ntTSL 3 BASIC7.45□□□□□ -1.22
LIG1P18858 PDCL2P2-201ENST00000533651 189 ntBASIC7.45□□□□□ -1.22
LIG1P18858 OR4A40P-201ENST00000533878 948 ntBASIC7.45□□□□□ -1.22
LIG1P18858 CLEC2B-202ENST00000538152 745 ntTSL 2 BASIC7.45□□□□□ -1.22
LIG1P18858 OLR1-210ENST00000544577 924 ntTSL 5 BASIC7.45□□□□□ -1.22
LIG1P18858 AL135746.1-201ENST00000554205 547 ntTSL 3 BASIC7.45□□□□□ -1.22
LIG1P18858 FRMD6-AS2-202ENST00000557625 581 ntTSL 4 BASIC7.45□□□□□ -1.22
LIG1P18858 LINS1-207ENST00000560133 1196 ntTSL 2 BASIC7.45□□□□□ -1.22
LIG1P18858 LINC02170-201ENST00000561519 555 ntTSL 4 BASIC7.45□□□□□ -1.22
LIG1P18858 AC009852.1-201ENST00000564058 465 ntTSL 3 BASIC7.45□□□□□ -1.22
LIG1P18858 BLOC1S6-209ENST00000565409 616 ntTSL 4 BASIC7.45□□□□□ -1.22
LIG1P18858 AP003115.1-201ENST00000569849 463 ntBASIC7.45□□□□□ -1.22
LIG1P18858 AC135178.4-201ENST00000585275 548 ntTSL 2 BASIC7.45□□□□□ -1.22
LIG1P18858 AC008759.1-201ENST00000589783 983 ntBASIC7.45□□□□□ -1.22
LIG1P18858 AC091769.2-201ENST00000605385 479 ntTSL 4 BASIC7.45□□□□□ -1.22
LIG1P18858 ARF4-AS1-203ENST00000607782 552 ntTSL 3 BASIC7.45□□□□□ -1.22
LIG1P18858 RMST_10.1-201ENST00000616309 154 ntBASIC7.45□□□□□ -1.22
LIG1P18858 Metazoa_SRP.181-201ENST00000616636 288 ntBASIC7.45□□□□□ -1.22
LIG1P18858 AL354821.1-201ENST00000617598 809 ntTSL 3 BASIC7.45□□□□□ -1.22
LIG1P18858 MMP2-AS1-203ENST00000620495 625 ntTSL 3 BASIC7.45□□□□□ -1.22
LIG1P18858 AC073488.9-201ENST00000631601 754 ntBASIC7.45□□□□□ -1.22
LIG1P18858 LINC00698-203ENST00000468072 1957 ntTSL 1 (best) BASIC7.45□□□□□ -1.22
LIG1P18858 TOR1AIP1-202ENST00000435319 3397 ntAPPRIS ALT2 TSL 1 (best) BASIC7.45□□□□□ -1.22
LIG1P18858 C5orf64-203ENST00000505642 2970 ntTSL 2 BASIC7.45□□□□□ -1.22
LIG1P18858 LINC01505-205ENST00000636028 2298 ntTSL 5 BASIC7.45□□□□□ -1.22
LIG1P18858 MUC5B-204ENST00000529681 17911 ntAPPRIS P1 TSL 5 BASIC7.45□□□□□ -1.22
LIG1P18858 ZEB2-AS1-202ENST00000427278 1322 ntTSL 5 BASIC7.45□□□□□ -1.22
LIG1P18858 TAF9-205ENST00000506736 1331 ntAPPRIS P2 TSL 1 (best) BASIC7.45□□□□□ -1.22
LIG1P18858 PSMC6-219ENST00000612399 1590 ntAPPRIS P2 TSL 1 (best) BASIC7.45□□□□□ -1.22
LIG1P18858 ZNF532-201ENST00000336078 6696 ntAPPRIS P1 TSL 1 (best) BASIC7.45□□□□□ -1.22
LIG1P18858 TLR1-201ENST00000308979 2849 ntAPPRIS P1 TSL 1 (best) BASIC7.45□□□□□ -1.22
LIG1P18858 GPM6A-201ENST00000280187 2854 ntAPPRIS P1 TSL 1 (best) BASIC7.45□□□□□ -1.22
LIG1P18858 LINC02060-201ENST00000506041 1626 ntTSL 1 (best) BASIC7.45□□□□□ -1.22
LIG1P18858 AC111188.2-201ENST00000529697 1387 ntBASIC7.45□□□□□ -1.22
LIG1P18858 KIAA1328-202ENST00000586135 1863 ntTSL 1 (best) BASIC7.45□□□□□ -1.22
LIG1P18858 CASC19-248ENST00000641674 1356 ntBASIC7.45□□□□□ -1.22
LIG1P18858 IGIP-201ENST00000333305 3458 ntAPPRIS P1 BASIC7.44□□□□□ -1.22
LIG1P18858 AP000432.2-201ENST00000624164 2048 ntBASIC7.44□□□□□ -1.22
LIG1P18858 TMC7-202ENST00000421369 4499 ntTSL 1 (best) BASIC7.44□□□□□ -1.22
LIG1P18858 GCNT2-203ENST00000379597 4525 ntAPPRIS ALT1 TSL 1 (best) BASIC7.44□□□□□ -1.22
LIG1P18858 DOCK11P1-201ENST00000553480 5932 ntBASIC7.44□□□□□ -1.22
LIG1P18858 OR2AP1-202ENST00000641114 1548 ntAPPRIS P1 BASIC7.44□□□□□ -1.22
LIG1P18858 ZCCHC6-201ENST00000277141 5724 ntTSL 2 BASIC7.44□□□□□ -1.22
LIG1P18858 OR1Q1-201ENST00000297913 945 ntAPPRIS P1 BASIC7.44□□□□□ -1.22
LIG1P18858 TRIM69-202ENST00000338264 1222 ntTSL 1 (best) BASIC7.44□□□□□ -1.22
LIG1P18858 ANKRD36P1-201ENST00000344424 659 ntBASIC7.44□□□□□ -1.22
LIG1P18858 RNU6-1331P-201ENST00000363658 106 ntBASIC7.44□□□□□ -1.22
LIG1P18858 PAGE2B-201ENST00000374971 493 ntAPPRIS P1 TSL 1 (best) BASIC7.44□□□□□ -1.22
LIG1P18858 AL590635.1-201ENST00000406314 586 ntBASIC7.44□□□□□ -1.22
LIG1P18858 AL645465.1-201ENST00000417765 642 ntTSL 3 BASIC7.44□□□□□ -1.22
LIG1P18858 AL357315.1-201ENST00000422930 254 ntTSL 5 BASIC7.44□□□□□ -1.22
LIG1P18858 GCA-203ENST00000429691 824 ntTSL 3 BASIC7.44□□□□□ -1.22
LIG1P18858 AL138733.2-201ENST00000431947 804 ntTSL 5 BASIC7.44□□□□□ -1.22
LIG1P18858 NEK4P1-201ENST00000433383 879 ntBASIC7.44□□□□□ -1.22
LIG1P18858 AC129850.1-201ENST00000436203 508 ntBASIC7.44□□□□□ -1.22
LIG1P18858 AL365258.1-201ENST00000440885 247 ntTSL 3 BASIC7.44□□□□□ -1.22
LIG1P18858 RPS27P5-201ENST00000444247 244 ntBASIC7.44□□□□□ -1.22
LIG1P18858 WDR82P2-201ENST00000444540 928 ntBASIC7.44□□□□□ -1.22
LIG1P18858 AL627224.1-201ENST00000448334 444 ntBASIC7.44□□□□□ -1.22
LIG1P18858 AL121578.2-201ENST00000448797 447 ntBASIC7.44□□□□□ -1.22
LIG1P18858 NDUFB3-204ENST00000454214 547 ntAPPRIS P1 TSL 2 BASIC7.44□□□□□ -1.22
LIG1P18858 VAMP3-202ENST00000470357 954 ntTSL 3 BASIC7.44□□□□□ -1.22
LIG1P18858 BZW1P2-201ENST00000473537 826 ntBASIC7.44□□□□□ -1.22
LIG1P18858 RN7SL502P-201ENST00000481857 290 ntBASIC7.44□□□□□ -1.22
LIG1P18858 LINC01484-201ENST00000517733 555 ntTSL 4 BASIC7.44□□□□□ -1.22
LIG1P18858 FBXO16-207ENST00000518734 995 ntAPPRIS ALT2 TSL 1 (best) BASIC7.44□□□□□ -1.22
LIG1P18858 PTK2-220ENST00000520151 573 ntTSL 4 BASIC7.44□□□□□ -1.22
LIG1P18858 MIR100HG-213ENST00000531470 560 ntTSL 4 BASIC7.44□□□□□ -1.22
Retrieved 100 of 98,524 protein–RNA pairs in 75.2 ms