Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 Z98949.1-220ENST00000609809 804 ntTSL 5 BASIC6.94□□□□□ -1.3
COL3A1P02461 AC093495.1-217ENST00000627385 428 ntTSL 5 BASIC6.94□□□□□ -1.3
COL3A1P02461 AP2B1-222ENST00000628168 192 ntTSL 5 BASIC6.94□□□□□ -1.3
COL3A1P02461 SRRM1-202ENST00000374389 3110 ntAPPRIS ALT2 TSL 5 BASIC6.94□□□□□ -1.3
COL3A1P02461 ASXL2-201ENST00000336112 8889 ntAPPRIS ALT2 TSL 1 (best) BASIC6.94□□□□□ -1.3
COL3A1P02461 AC037459.2-201ENST00000514980 4076 ntTSL 2 BASIC6.94□□□□□ -1.3
COL3A1P02461 SETDB2-201ENST00000258672 2138 ntTSL 5 BASIC6.94□□□□□ -1.3
COL3A1P02461 NELL2-205ENST00000452445 3196 ntAPPRIS P1 TSL 1 (best) BASIC6.94□□□□□ -1.3
COL3A1P02461 ITCH-201ENST00000262650 3089 ntTSL 1 (best) BASIC6.94□□□□□ -1.3
COL3A1P02461 LMNTD1-201ENST00000282881 1718 ntAPPRIS P3 TSL 2 BASIC6.94□□□□□ -1.3
COL3A1P02461 TNFSF4-202ENST00000367718 3429 ntTSL 1 (best) BASIC6.94□□□□□ -1.3
COL3A1P02461 BTRC-204ENST00000408038 5982 ntAPPRIS ALT1 TSL 1 (best) BASIC6.94□□□□□ -1.3
COL3A1P02461 KCNN3-205ENST00000618040 13057 ntTSL 5 BASIC6.94□□□□□ -1.3
COL3A1P02461 TRPC4-201ENST00000338947 2912 ntTSL 5 BASIC6.94□□□□□ -1.3
COL3A1P02461 LINC01684-203ENST00000453784 2908 ntTSL 2 BASIC6.94□□□□□ -1.3
COL3A1P02461 MLLT10-217ENST00000631589 4955 ntAPPRIS ALT2 TSL 5 BASIC6.93□□□□□ -1.3
COL3A1P02461 RBPJ-202ENST00000342320 5761 ntAPPRIS P3 TSL 1 (best) BASIC6.93□□□□□ -1.3
COL3A1P02461 SON-204ENST00000381692 2463 ntTSL 1 (best) BASIC6.93□□□□□ -1.3
COL3A1P02461 CEP164P1-202ENST00000456938 2472 ntTSL 1 (best) BASIC6.93□□□□□ -1.3
COL3A1P02461 LAMTOR3-201ENST00000226522 1220 ntTSL 3 BASIC6.93□□□□□ -1.3
COL3A1P02461 RN7SKP16-201ENST00000410180 299 ntBASIC6.93□□□□□ -1.3
COL3A1P02461 AL136979.1-201ENST00000421645 1120 ntTSL 3 BASIC6.93□□□□□ -1.3
COL3A1P02461 EIF2S2P3-201ENST00000428356 999 ntBASIC6.93□□□□□ -1.3
COL3A1P02461 RPL19P16-201ENST00000433839 588 ntBASIC6.93□□□□□ -1.3
COL3A1P02461 AL390879.2-204ENST00000438602 582 ntTSL 3 BASIC6.93□□□□□ -1.3
COL3A1P02461 AC007655.1-201ENST00000444324 357 ntTSL 3 BASIC6.93□□□□□ -1.3
COL3A1P02461 KNOP1P3-201ENST00000446933 426 ntBASIC6.93□□□□□ -1.3
COL3A1P02461 MTND2P25-201ENST00000449028 610 ntBASIC6.93□□□□□ -1.3
COL3A1P02461 AC097484.1-201ENST00000471148 389 ntBASIC6.93□□□□□ -1.3
COL3A1P02461 RPS18P6-201ENST00000476880 458 ntBASIC6.93□□□□□ -1.3
COL3A1P02461 AC005412.2-201ENST00000492004 341 ntBASIC6.93□□□□□ -1.3
COL3A1P02461 AC111000.6-201ENST00000514471 709 ntBASIC6.93□□□□□ -1.3
COL3A1P02461 AC097173.2-201ENST00000518701 474 ntTSL 3 BASIC6.93□□□□□ -1.3
COL3A1P02461 AC062004.1-201ENST00000518706 686 ntTSL 3 BASIC6.93□□□□□ -1.3
COL3A1P02461 OR5AZ1P-201ENST00000527448 943 ntBASIC6.93□□□□□ -1.3
COL3A1P02461 AP003168.1-201ENST00000530091 307 ntBASIC6.93□□□□□ -1.3
COL3A1P02461 LINC00687-203ENST00000558175 696 ntTSL 3 BASIC6.93□□□□□ -1.3
COL3A1P02461 AC009137.2-201ENST00000568179 641 ntTSL 3 BASIC6.93□□□□□ -1.3
COL3A1P02461 AC087763.1-201ENST00000603391 286 ntBASIC6.93□□□□□ -1.3
COL3A1P02461 AC017076.1-201ENST00000607613 578 ntBASIC6.93□□□□□ -1.3
COL3A1P02461 AC002384.2-201ENST00000636036 790 ntTSL 3 BASIC6.93□□□□□ -1.3
COL3A1P02461 ABLIM1-202ENST00000369252 7690 ntTSL 5 BASIC6.93□□□□□ -1.3
COL3A1P02461 SLC9A6-212ENST00000637195 4858 ntTSL 5 BASIC6.93□□□□□ -1.3
COL3A1P02461 ELOVL6-202ENST00000394607 6454 ntAPPRIS P1 TSL 1 (best) BASIC6.93□□□□□ -1.3
COL3A1P02461 AL731532.1-201ENST00000623972 4236 ntBASIC6.93□□□□□ -1.3
COL3A1P02461 AL021877.2-201ENST00000624442 10684 ntBASIC6.93□□□□□ -1.3
COL3A1P02461 AC099506.1-201ENST00000567359 4037 ntTSL 1 (best) BASIC6.93□□□□□ -1.3
COL3A1P02461 LINC01541-202ENST00000568095 3105 ntTSL 1 (best) BASIC6.93□□□□□ -1.3
COL3A1P02461 LIMA1-215ENST00000552823 3254 ntAPPRIS ALT2 TSL 2 BASIC6.93□□□□□ -1.3
COL3A1P02461 PAIP2B-201ENST00000244221 6279 ntAPPRIS P1 TSL 1 (best) BASIC6.93□□□□□ -1.3
COL3A1P02461 AC097478.1-206ENST00000513572 2010 ntTSL 3 BASIC6.93□□□□□ -1.3
COL3A1P02461 OR9Q2-202ENST00000641291 3774 ntAPPRIS P1 BASIC6.93□□□□□ -1.3
COL3A1P02461 GREM1-203ENST00000622074 14606 ntAPPRIS P1 TSL 1 (best) BASIC6.93□□□□□ -1.3
COL3A1P02461 C3orf67-209ENST00000482387 2617 ntTSL 5 BASIC6.93□□□□□ -1.3
COL3A1P02461 ZBTB26-202ENST00000373656 4443 ntAPPRIS P1 TSL 1 (best) BASIC6.93□□□□□ -1.3
COL3A1P02461 TMEM99-201ENST00000301665 2058 ntAPPRIS P2 TSL 2 BASIC6.93□□□□□ -1.3
COL3A1P02461 ETFBKMT-201ENST00000357721 6128 ntAPPRIS P1 TSL 1 (best) BASIC6.92□□□□□ -1.3
COL3A1P02461 DEFB119-203ENST00000376321 457 ntAPPRIS P3 TSL 1 (best) BASIC6.92□□□□□ -1.3
COL3A1P02461 RNU6ATAC21P-201ENST00000408656 126 ntBASIC6.92□□□□□ -1.3
COL3A1P02461 AC073310.1-201ENST00000423226 1033 ntBASIC6.92□□□□□ -1.3
COL3A1P02461 AL356056.1-206ENST00000424615 407 ntTSL 5 BASIC6.92□□□□□ -1.3
COL3A1P02461 RPSAP41-201ENST00000439695 860 ntBASIC6.92□□□□□ -1.3
COL3A1P02461 AL133372.2-203ENST00000508469 922 ntTSL 1 (best) BASIC6.92□□□□□ -1.3
COL3A1P02461 LINC01493-201ENST00000530102 460 ntTSL 5 BASIC6.92□□□□□ -1.3
COL3A1P02461 AC015660.3-201ENST00000559569 198 ntTSL 3 BASIC6.92□□□□□ -1.3
COL3A1P02461 AL023583.1-201ENST00000607518 1143 ntBASIC6.92□□□□□ -1.3
COL3A1P02461 AL162574.2-201ENST00000614618 657 ntBASIC6.92□□□□□ -1.3
COL3A1P02461 AC044839.1-205ENST00000614989 542 ntTSL 5 BASIC6.92□□□□□ -1.3
COL3A1P02461 ZNF26-202ENST00000534834 4853 ntAPPRIS ALT2 TSL 2 BASIC6.92□□□□□ -1.3
COL3A1P02461 NIN-217ENST00000530997 8368 ntAPPRIS P5 TSL 5 BASIC6.92□□□□□ -1.3
COL3A1P02461 MDM4-207ENST00000454264 9926 ntTSL 1 (best) BASIC6.92□□□□□ -1.3
COL3A1P02461 ITGAV-204ENST00000433736 3288 ntAPPRIS ALT2 TSL 2 BASIC6.92□□□□□ -1.3
COL3A1P02461 AC008691.1-207ENST00000636819 4154 ntTSL 5 BASIC6.92□□□□□ -1.3
COL3A1P02461 CLCN3-211ENST00000613795 5874 ntTSL 5 BASIC6.92□□□□□ -1.3
COL3A1P02461 OTX2-AS1-201ENST00000534909 2428 ntTSL 1 (best) BASIC6.92□□□□□ -1.3
COL3A1P02461 CDON-202ENST00000392693 9138 ntAPPRIS ALT2 TSL 1 (best) BASIC6.92□□□□□ -1.3
COL3A1P02461 ABL2-201ENST00000344730 6910 ntAPPRIS ALT2 TSL 1 (best) BASIC6.92□□□□□ -1.3
COL3A1P02461 AL354696.2-201ENST00000619407 1910 ntTSL 2 BASIC6.92□□□□□ -1.3
COL3A1P02461 METTL21EP-202ENST00000605100 2312 ntTSL 2 BASIC6.92□□□□□ -1.3
COL3A1P02461 C3orf58-202ENST00000441925 3260 ntTSL 2 BASIC6.92□□□□□ -1.3
COL3A1P02461 OR7G2-201ENST00000305456 1038 ntAPPRIS P2 BASIC6.92□□□□□ -1.3
COL3A1P02461 GNAS-202ENST00000306090 477 ntTSL 5 BASIC6.92□□□□□ -1.3
COL3A1P02461 AMELX-202ENST00000380712 835 ntTSL 1 (best) BASIC6.92□□□□□ -1.3
COL3A1P02461 AMELX-203ENST00000380714 793 ntAPPRIS P1 TSL 1 (best) BASIC6.92□□□□□ -1.3
COL3A1P02461 GPS2P1-201ENST00000411761 986 ntBASIC6.92□□□□□ -1.3
COL3A1P02461 AC211486.3-201ENST00000412694 621 ntBASIC6.92□□□□□ -1.3
COL3A1P02461 AC019070.1-201ENST00000415008 1024 ntBASIC6.92□□□□□ -1.3
COL3A1P02461 AL450992.2-201ENST00000434182 506 ntTSL 5 BASIC6.92□□□□□ -1.3
COL3A1P02461 AC016772.1-201ENST00000444170 1261 ntBASIC6.92□□□□□ -1.3
COL3A1P02461 H2AFZP6-201ENST00000444403 394 ntBASIC6.92□□□□□ -1.3
COL3A1P02461 DNAJB5P1-201ENST00000454004 806 ntBASIC6.92□□□□□ -1.3
COL3A1P02461 PSAT1P4-201ENST00000466500 526 ntBASIC6.92□□□□□ -1.3
COL3A1P02461 OR5M14P-201ENST00000506803 618 ntBASIC6.92□□□□□ -1.3
COL3A1P02461 AC092490.3-201ENST00000545370 572 ntBASIC6.92□□□□□ -1.3
COL3A1P02461 AC090079.2-201ENST00000575289 768 ntBASIC6.92□□□□□ -1.3
COL3A1P02461 DIAPH2-AS1-204ENST00000579945 974 ntTSL 1 (best) BASIC6.92□□□□□ -1.3
COL3A1P02461 AC005324.5-201ENST00000584540 571 ntTSL 5 BASIC6.92□□□□□ -1.3
COL3A1P02461 UBA2-208ENST00000592791 910 ntTSL 2 BASIC6.92□□□□□ -1.3
COL3A1P02461 LINC01676-204ENST00000595309 871 ntTSL 5 BASIC6.92□□□□□ -1.3
COL3A1P02461 AC009597.2-201ENST00000604659 592 ntBASIC6.92□□□□□ -1.3
Retrieved 100 of 98,524 protein–RNA pairs in 97.5 ms