Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 PALMD-201ENST00000263174 2510 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
SIX2Q9NPC8 OR1L4-201ENST00000259466 936 ntAPPRIS P1 BASIC5.71□□□□□ -1.5
SIX2Q9NPC8 C1orf194-202ENST00000369945 534 ntTSL 5 BASIC5.71□□□□□ -1.5
SIX2Q9NPC8 LINC00474-201ENST00000374014 769 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
SIX2Q9NPC8 MYO3A-202ENST00000376301 727 ntTSL 5 BASIC5.71□□□□□ -1.5
SIX2Q9NPC8 BPHL-201ENST00000380368 797 ntTSL 5 BASIC5.71□□□□□ -1.5
SIX2Q9NPC8 TRGV5-201ENST00000390344 552 ntAPPRIS P1 BASIC5.71□□□□□ -1.5
SIX2Q9NPC8 RNA5SP339-201ENST00000390987 122 ntBASIC5.71□□□□□ -1.5
SIX2Q9NPC8 CAPSL-201ENST00000397366 969 ntAPPRIS P1 TSL 3 BASIC5.71□□□□□ -1.5
SIX2Q9NPC8 AC095032.2-201ENST00000414923 418 ntTSL 2 BASIC5.71□□□□□ -1.5
SIX2Q9NPC8 AC022535.1-201ENST00000420082 691 ntTSL 3 BASIC5.71□□□□□ -1.5
SIX2Q9NPC8 AC006455.6-201ENST00000426192 893 ntBASIC5.71□□□□□ -1.5
SIX2Q9NPC8 AC104843.2-201ENST00000427666 297 ntBASIC5.71□□□□□ -1.5
SIX2Q9NPC8 ATP13A4-AS1-202ENST00000431512 394 ntTSL 3 BASIC5.71□□□□□ -1.5
SIX2Q9NPC8 AC012668.2-201ENST00000431727 503 ntTSL 3 BASIC5.71□□□□□ -1.5
SIX2Q9NPC8 LINC02038-201ENST00000439074 702 ntTSL 4 BASIC5.71□□□□□ -1.5
SIX2Q9NPC8 AL731574.1-201ENST00000447757 456 ntTSL 5 BASIC5.71□□□□□ -1.5
SIX2Q9NPC8 RPS26P41-201ENST00000450370 284 ntBASIC5.71□□□□□ -1.5
SIX2Q9NPC8 AC100832.1-201ENST00000471945 383 ntBASIC5.71□□□□□ -1.5
SIX2Q9NPC8 CRNDE-201ENST00000501177 614 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
SIX2Q9NPC8 RPS3A-210ENST00000512690 845 ntTSL 3 BASIC5.71□□□□□ -1.5
SIX2Q9NPC8 AC008705.1-201ENST00000518837 489 ntTSL 3 BASIC5.71□□□□□ -1.5
SIX2Q9NPC8 RBPMS-207ENST00000519647 780 ntTSL 5 BASIC5.71□□□□□ -1.5
SIX2Q9NPC8 AC022360.1-201ENST00000521058 340 ntBASIC5.71□□□□□ -1.5
SIX2Q9NPC8 AC068672.3-201ENST00000524017 824 ntTSL 3 BASIC5.71□□□□□ -1.5
SIX2Q9NPC8 AC103855.1-201ENST00000525926 564 ntTSL 2 BASIC5.71□□□□□ -1.5
SIX2Q9NPC8 AC079907.2-202ENST00000547004 423 ntTSL 2 BASIC5.71□□□□□ -1.5
SIX2Q9NPC8 AC022404.1-201ENST00000555320 273 ntBASIC5.71□□□□□ -1.5
SIX2Q9NPC8 NMNAT1P5-201ENST00000559657 841 ntBASIC5.71□□□□□ -1.5
SIX2Q9NPC8 RPL10P14-201ENST00000565265 298 ntBASIC5.71□□□□□ -1.5
SIX2Q9NPC8 AC019322.1-201ENST00000571869 389 ntBASIC5.71□□□□□ -1.5
SIX2Q9NPC8 MIR4660-201ENST00000583549 74 ntBASIC5.71□□□□□ -1.5
SIX2Q9NPC8 PSMG2-204ENST00000585331 983 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
SIX2Q9NPC8 SUGT1P3-202ENST00000604259 383 ntBASIC5.71□□□□□ -1.5
SIX2Q9NPC8 AC092944.2-201ENST00000605443 889 ntBASIC5.71□□□□□ -1.5
SIX2Q9NPC8 AC005162.3-202ENST00000609495 483 ntTSL 5 BASIC5.71□□□□□ -1.5
SIX2Q9NPC8 AC022960.2-201ENST00000616300 666 ntBASIC5.71□□□□□ -1.5
SIX2Q9NPC8 MILR1-204ENST00000616498 747 ntAPPRIS ALT2 TSL 1 (best) BASIC5.71□□□□□ -1.5
SIX2Q9NPC8 REV3L-214ENST00000619481 969 ntTSL 5 BASIC5.71□□□□□ -1.5
SIX2Q9NPC8 MIR8080-201ENST00000622224 89 ntBASIC5.71□□□□□ -1.5
SIX2Q9NPC8 PCDHB2-203ENST00000624874 565 ntTSL 5 BASIC5.71□□□□□ -1.5
SIX2Q9NPC8 MAPK10-328ENST00000641553 4009 ntBASIC5.71□□□□□ -1.5
SIX2Q9NPC8 AC089998.1-201ENST00000548575 3141 ntBASIC5.71□□□□□ -1.5
SIX2Q9NPC8 AC004158.1-201ENST00000564508 4319 ntBASIC5.71□□□□□ -1.5
SIX2Q9NPC8 OR8D4-201ENST00000321355 1331 ntAPPRIS P1 BASIC5.71□□□□□ -1.5
SIX2Q9NPC8 FANCD2-203ENST00000419585 5185 ntAPPRIS ALT2 TSL 1 (best) BASIC5.71□□□□□ -1.5
SIX2Q9NPC8 ALG10B-201ENST00000308742 10253 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
SIX2Q9NPC8 NTRK3-205ENST00000394480 19984 ntAPPRIS P3 TSL 5 BASIC5.7□□□□□ -1.5
SIX2Q9NPC8 KCNJ1-204ENST00000392665 4074 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
SIX2Q9NPC8 LINC01179-201ENST00000507838 2163 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
SIX2Q9NPC8 RXFP1-206ENST00000460056 2735 ntTSL 2 BASIC5.7□□□□□ -1.5
SIX2Q9NPC8 AC023421.1-201ENST00000590535 1785 ntBASIC5.7□□□□□ -1.5
SIX2Q9NPC8 CLIP4-202ENST00000401605 2322 ntTSL 2 BASIC5.7□□□□□ -1.5
SIX2Q9NPC8 ANK3-201ENST00000280772 16874 ntAPPRIS P3 TSL 1 (best) BASIC5.7□□□□□ -1.5
SIX2Q9NPC8 AC006210.2-201ENST00000367074 1545 ntBASIC5.7□□□□□ -1.5
SIX2Q9NPC8 MPDZ-219ENST00000546205 6342 ntAPPRIS ALT2 TSL 5 BASIC5.7□□□□□ -1.5
SIX2Q9NPC8 OR7A5-201ENST00000322301 4216 ntAPPRIS P1 BASIC5.7□□□□□ -1.5
SIX2Q9NPC8 AC137056.2-201ENST00000624055 1958 ntBASIC5.7□□□□□ -1.5
SIX2Q9NPC8 SSMEM1-201ENST00000297819 1159 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
SIX2Q9NPC8 AC005294.1-201ENST00000355509 281 ntBASIC5.7□□□□□ -1.5
SIX2Q9NPC8 U3.7-201ENST00000363668 216 ntBASIC5.7□□□□□ -1.5
SIX2Q9NPC8 AC007618.1-201ENST00000366455 732 ntBASIC5.7□□□□□ -1.5
SIX2Q9NPC8 RCAN3-201ENST00000374393 382 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
SIX2Q9NPC8 IFNA8-201ENST00000380205 1039 ntAPPRIS P1 BASIC5.7□□□□□ -1.5
SIX2Q9NPC8 FETUB-203ENST00000382136 1040 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
SIX2Q9NPC8 RNA5SP187-201ENST00000384400 119 ntBASIC5.7□□□□□ -1.5
SIX2Q9NPC8 AC005323.2-201ENST00000399342 583 ntTSL 3 BASIC5.7□□□□□ -1.5
SIX2Q9NPC8 ZSCAN12P1-201ENST00000406489 419 ntBASIC5.7□□□□□ -1.5
SIX2Q9NPC8 SNORA81-201ENST00000408493 178 ntBASIC5.7□□□□□ -1.5
SIX2Q9NPC8 RN7SKP16-201ENST00000410180 299 ntBASIC5.7□□□□□ -1.5
SIX2Q9NPC8 RNA5SP487-201ENST00000410186 122 ntBASIC5.7□□□□□ -1.5
SIX2Q9NPC8 AL390774.1-201ENST00000411924 246 ntBASIC5.7□□□□□ -1.5
SIX2Q9NPC8 AC012499.1-201ENST00000412133 741 ntTSL 5 BASIC5.7□□□□□ -1.5
SIX2Q9NPC8 CASKP1-201ENST00000412870 582 ntBASIC5.7□□□□□ -1.5
SIX2Q9NPC8 AC023347.1-202ENST00000419223 440 ntTSL 5 BASIC5.7□□□□□ -1.5
SIX2Q9NPC8 LINC01740-201ENST00000423842 332 ntTSL 2 BASIC5.7□□□□□ -1.5
SIX2Q9NPC8 AC090018.1-201ENST00000434369 367 ntBASIC5.7□□□□□ -1.5
SIX2Q9NPC8 AC009948.1-206ENST00000436616 1020 ntTSL 3 BASIC5.7□□□□□ -1.5
SIX2Q9NPC8 AC079168.1-201ENST00000458741 345 ntBASIC5.7□□□□□ -1.5
SIX2Q9NPC8 RN7SL51P-201ENST00000468230 285 ntBASIC5.7□□□□□ -1.5
SIX2Q9NPC8 DEFB109A-201ENST00000482450 265 ntBASIC5.7□□□□□ -1.5
SIX2Q9NPC8 RN7SL466P-201ENST00000497546 295 ntBASIC5.7□□□□□ -1.5
SIX2Q9NPC8 AC004052.1-201ENST00000514327 567 ntTSL 4 BASIC5.7□□□□□ -1.5
SIX2Q9NPC8 AC107391.1-201ENST00000514966 412 ntTSL 2 BASIC5.7□□□□□ -1.5
SIX2Q9NPC8 LINC02382-201ENST00000515840 614 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
SIX2Q9NPC8 MSC-AS1-205ENST00000519068 569 ntTSL 3 BASIC5.7□□□□□ -1.5
SIX2Q9NPC8 AP001992.1-201ENST00000533875 723 ntTSL 5 BASIC5.7□□□□□ -1.5
SIX2Q9NPC8 OR7G1-201ENST00000541538 936 ntAPPRIS P1 BASIC5.7□□□□□ -1.5
SIX2Q9NPC8 AC126177.5-201ENST00000549599 178 ntBASIC5.7□□□□□ -1.5
SIX2Q9NPC8 DUXA-201ENST00000554048 1006 ntAPPRIS P1 TSL 3 BASIC5.7□□□□□ -1.5
SIX2Q9NPC8 AL161757.4-204ENST00000557136 834 ntTSL 3 BASIC5.7□□□□□ -1.5
SIX2Q9NPC8 AC022884.2-201ENST00000578535 580 ntBASIC5.7□□□□□ -1.5
SIX2Q9NPC8 UBA2-208ENST00000592791 910 ntTSL 2 BASIC5.7□□□□□ -1.5
SIX2Q9NPC8 AL050403.2-203ENST00000603180 558 ntTSL 4 BASIC5.7□□□□□ -1.5
SIX2Q9NPC8 AF117829.2-201ENST00000619538 361 ntBASIC5.7□□□□□ -1.5
SIX2Q9NPC8 AC063952.1-204ENST00000635496 927 ntTSL 5 BASIC5.7□□□□□ -1.5
SIX2Q9NPC8 ELAVL4-205ENST00000371824 3966 ntAPPRIS P5 TSL 1 (best) BASIC5.7□□□□□ -1.5
SIX2Q9NPC8 GRIK2-203ENST00000369134 4185 ntTSL 5 BASIC5.7□□□□□ -1.5
SIX2Q9NPC8 PCDH18-202ENST00000412923 5102 ntAPPRIS ALT1 TSL 1 (best) BASIC5.69□□□□□ -1.5
SIX2Q9NPC8 DTNA-231ENST00000598774 2418 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 68.1 ms