Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 CDR1-202ENST00000625883 1485 ntBASIC7.64□□□□□ -1.19
TRAIPQ9BWF2 ZEB2-AS1-202ENST00000427278 1322 ntTSL 5 BASIC7.64□□□□□ -1.19
TRAIPQ9BWF2 OR6C3-202ENST00000641364 1341 ntAPPRIS P1 BASIC7.64□□□□□ -1.19
TRAIPQ9BWF2 ITGB3BP-201ENST00000271002 948 ntAPPRIS P3 TSL 1 (best) BASIC7.64□□□□□ -1.19
TRAIPQ9BWF2 MT-ATP6-201ENST00000361899 681 ntAPPRIS P1 BASIC7.64□□□□□ -1.19
TRAIPQ9BWF2 RN7SKP149-201ENST00000363008 344 ntBASIC7.64□□□□□ -1.19
TRAIPQ9BWF2 ATP5EP2-201ENST00000381026 385 ntAPPRIS P1 BASIC7.64□□□□□ -1.19
TRAIPQ9BWF2 CCDC148-AS1-201ENST00000412781 795 ntTSL 1 (best) BASIC7.64□□□□□ -1.19
TRAIPQ9BWF2 PTPN2P1-201ENST00000423212 1072 ntBASIC7.64□□□□□ -1.19
TRAIPQ9BWF2 AC004870.2-202ENST00000423781 706 ntTSL 3 BASIC7.64□□□□□ -1.19
TRAIPQ9BWF2 LINC01935-201ENST00000431897 437 ntTSL 3 BASIC7.64□□□□□ -1.19
TRAIPQ9BWF2 RPL39L-202ENST00000433055 749 ntAPPRIS P1 TSL 2 BASIC7.64□□□□□ -1.19
TRAIPQ9BWF2 AC068058.1-201ENST00000435782 389 ntTSL 5 BASIC7.64□□□□□ -1.19
TRAIPQ9BWF2 RPL23AP35-201ENST00000451906 501 ntBASIC7.64□□□□□ -1.19
TRAIPQ9BWF2 RN7SL160P-201ENST00000468558 284 ntBASIC7.64□□□□□ -1.19
TRAIPQ9BWF2 B4GALT4-AS1-201ENST00000470790 544 ntTSL 5 BASIC7.64□□□□□ -1.19
TRAIPQ9BWF2 RAP1BP2-201ENST00000478270 544 ntBASIC7.64□□□□□ -1.19
TRAIPQ9BWF2 AC099520.1-203ENST00000506976 464 ntTSL 3 BASIC7.64□□□□□ -1.19
TRAIPQ9BWF2 ATP1B1P1-201ENST00000509767 915 ntBASIC7.64□□□□□ -1.19
TRAIPQ9BWF2 JCHAIN-204ENST00000510437 640 ntAPPRIS P1 TSL 3 BASIC7.64□□□□□ -1.19
TRAIPQ9BWF2 AC106800.2-201ENST00000514009 1103 ntBASIC7.64□□□□□ -1.19
TRAIPQ9BWF2 MTATP6P1-201ENST00000514057 681 ntBASIC7.64□□□□□ -1.19
TRAIPQ9BWF2 AC008494.2-201ENST00000514544 370 ntBASIC7.64□□□□□ -1.19
TRAIPQ9BWF2 Y_RNA.655-201ENST00000515919 96 ntBASIC7.64□□□□□ -1.19
TRAIPQ9BWF2 AC104109.4-202ENST00000518409 1082 ntTSL 2 BASIC7.64□□□□□ -1.19
TRAIPQ9BWF2 AF279873.1-201ENST00000523393 313 ntBASIC7.64□□□□□ -1.19
TRAIPQ9BWF2 ANKRD49-206ENST00000540349 573 ntTSL 4 BASIC7.64□□□□□ -1.19
TRAIPQ9BWF2 LINC00944-203ENST00000542248 548 ntTSL 4 BASIC7.64□□□□□ -1.19
TRAIPQ9BWF2 AC027288.1-201ENST00000548359 816 ntTSL 3 BASIC7.64□□□□□ -1.19
TRAIPQ9BWF2 AC012464.1-201ENST00000550687 540 ntTSL 4 BASIC7.64□□□□□ -1.19
TRAIPQ9BWF2 CHEK2P2-201ENST00000554701 672 ntBASIC7.64□□□□□ -1.19
TRAIPQ9BWF2 AL161757.5-202ENST00000556696 570 ntTSL 3 BASIC7.64□□□□□ -1.19
TRAIPQ9BWF2 LINC02131-201ENST00000563289 419 ntTSL 2 BASIC7.64□□□□□ -1.19
TRAIPQ9BWF2 ACTR3BP3-201ENST00000565577 979 ntBASIC7.64□□□□□ -1.19
TRAIPQ9BWF2 AL032819.1-201ENST00000568554 379 ntTSL 3 BASIC7.64□□□□□ -1.19
TRAIPQ9BWF2 MIR3135A-201ENST00000578460 77 ntBASIC7.64□□□□□ -1.19
TRAIPQ9BWF2 AP005120.1-201ENST00000579321 352 ntTSL 3 BASIC7.64□□□□□ -1.19
TRAIPQ9BWF2 AC011476.3-203ENST00000586961 346 ntTSL 5 BASIC7.64□□□□□ -1.19
TRAIPQ9BWF2 AP000811.1-201ENST00000603803 651 ntBASIC7.64□□□□□ -1.19
TRAIPQ9BWF2 RPS4XP21-201ENST00000603814 750 ntBASIC7.64□□□□□ -1.19
TRAIPQ9BWF2 AC009027.1-201ENST00000604510 479 ntBASIC7.64□□□□□ -1.19
TRAIPQ9BWF2 AP002345.2-201ENST00000609961 904 ntBASIC7.64□□□□□ -1.19
TRAIPQ9BWF2 AC005962.2-201ENST00000611427 652 ntBASIC7.64□□□□□ -1.19
TRAIPQ9BWF2 AC211486.4-201ENST00000621495 113 ntBASIC7.64□□□□□ -1.19
TRAIPQ9BWF2 LINC01646-202ENST00000634256 1107 ntTSL 5 BASIC7.64□□□□□ -1.19
TRAIPQ9BWF2 LINC01141-204ENST00000635564 1008 ntTSL 5 BASIC7.64□□□□□ -1.19
TRAIPQ9BWF2 OR52N4-202ENST00000641350 1276 ntAPPRIS P1 BASIC7.64□□□□□ -1.19
TRAIPQ9BWF2 VCAN-202ENST00000342785 7154 ntTSL 1 (best) BASIC7.64□□□□□ -1.19
TRAIPQ9BWF2 EIF1-203ENST00000469257 2330 ntAPPRIS P1 TSL 1 (best) BASIC7.64□□□□□ -1.19
TRAIPQ9BWF2 ZNF732-202ENST00000619749 2179 ntAPPRIS ALT2 TSL 2 BASIC7.64□□□□□ -1.19
TRAIPQ9BWF2 BEST1-202ENST00000449131 4267 ntTSL 1 (best) BASIC7.64□□□□□ -1.19
TRAIPQ9BWF2 CCP110-202ENST00000396208 5151 ntAPPRIS P3 TSL 1 (best) BASIC7.64□□□□□ -1.19
TRAIPQ9BWF2 HYDIN-215ENST00000541601 3058 ntAPPRIS ALT2 TSL 2 BASIC7.64□□□□□ -1.19
TRAIPQ9BWF2 MAPK10-251ENST00000640858 3052 ntTSL 5 BASIC7.64□□□□□ -1.19
TRAIPQ9BWF2 TMEM155-203ENST00000394396 2032 ntAPPRIS P2 TSL 2 BASIC7.64□□□□□ -1.19
TRAIPQ9BWF2 TMEM132B-201ENST00000299308 10906 ntAPPRIS P3 TSL 5 BASIC7.64□□□□□ -1.19
TRAIPQ9BWF2 AC073130.1-201ENST00000457033 1958 ntTSL 2 BASIC7.64□□□□□ -1.19
TRAIPQ9BWF2 SPATA31C1-201ENST00000420021 3895 ntBASIC7.64□□□□□ -1.19
TRAIPQ9BWF2 FGF13-201ENST00000305414 1939 ntTSL 1 (best) BASIC7.64□□□□□ -1.19
TRAIPQ9BWF2 FHL1-218ENST00000543669 2878 ntTSL 1 (best) BASIC7.64□□□□□ -1.19
TRAIPQ9BWF2 GABRA3-204ENST00000535043 1697 ntAPPRIS P1 TSL 1 (best) BASIC7.63□□□□□ -1.19
TRAIPQ9BWF2 AC110597.1-201ENST00000562669 3176 ntBASIC7.63□□□□□ -1.19
TRAIPQ9BWF2 OR2AP1-202ENST00000641114 1548 ntAPPRIS P1 BASIC7.63□□□□□ -1.19
TRAIPQ9BWF2 ZBTB21-204ENST00000398505 6846 ntTSL 1 (best) BASIC7.63□□□□□ -1.19
TRAIPQ9BWF2 MMAA-205ENST00000541599 1437 ntTSL 5 BASIC7.63□□□□□ -1.19
TRAIPQ9BWF2 SPECC1L-207ENST00000541492 3525 ntTSL 2 BASIC7.63□□□□□ -1.19
TRAIPQ9BWF2 TIGD2-201ENST00000317005 2083 ntAPPRIS P1 BASIC7.63□□□□□ -1.19
TRAIPQ9BWF2 HMMR-204ENST00000432118 2084 ntAPPRIS ALT2 TSL 2 BASIC7.63□□□□□ -1.19
TRAIPQ9BWF2 AC011477.1-204ENST00000623416 1325 ntBASIC7.63□□□□□ -1.19
TRAIPQ9BWF2 DCX-203ENST00000371993 9231 ntAPPRIS ALT1 TSL 5 BASIC7.63□□□□□ -1.19
TRAIPQ9BWF2 MAK-203ENST00000474039 3859 ntAPPRIS P1 TSL 1 (best) BASIC7.63□□□□□ -1.19
TRAIPQ9BWF2 IL2-201ENST00000226730 1029 ntAPPRIS P1 TSL 1 (best) BASIC7.63□□□□□ -1.19
TRAIPQ9BWF2 FAM32BP-201ENST00000344033 333 ntBASIC7.63□□□□□ -1.19
TRAIPQ9BWF2 Y_RNA.77-201ENST00000362962 107 ntBASIC7.63□□□□□ -1.19
TRAIPQ9BWF2 RNU6-115P-201ENST00000364310 107 ntBASIC7.63□□□□□ -1.19
TRAIPQ9BWF2 AL079341.1-201ENST00000404701 1207 ntBASIC7.63□□□□□ -1.19
TRAIPQ9BWF2 GAPDHP42-201ENST00000406848 981 ntBASIC7.63□□□□□ -1.19
TRAIPQ9BWF2 AL136100.1-201ENST00000407696 330 ntBASIC7.63□□□□□ -1.19
TRAIPQ9BWF2 CEACAMP8-201ENST00000413902 580 ntBASIC7.63□□□□□ -1.19
TRAIPQ9BWF2 LINC01829-201ENST00000414404 571 ntTSL 2 BASIC7.63□□□□□ -1.19
TRAIPQ9BWF2 AC005104.1-201ENST00000414896 442 ntTSL 3 BASIC7.63□□□□□ -1.19
TRAIPQ9BWF2 P2RY10P2-201ENST00000416730 913 ntBASIC7.63□□□□□ -1.19
TRAIPQ9BWF2 AL022100.2-201ENST00000422548 389 ntTSL 3 BASIC7.63□□□□□ -1.19
TRAIPQ9BWF2 HSFX3-201ENST00000431993 1264 ntAPPRIS P1 TSL 3 BASIC7.63□□□□□ -1.19
TRAIPQ9BWF2 AC129850.1-201ENST00000436203 508 ntBASIC7.63□□□□□ -1.19
TRAIPQ9BWF2 LINC01809-201ENST00000448431 303 ntTSL 1 (best) BASIC7.63□□□□□ -1.19
TRAIPQ9BWF2 MTND2P19-201ENST00000449129 1012 ntBASIC7.63□□□□□ -1.19
TRAIPQ9BWF2 NPM1P19-201ENST00000450070 712 ntBASIC7.63□□□□□ -1.19
TRAIPQ9BWF2 AC068707.1-201ENST00000451438 391 ntTSL 3 BASIC7.63□□□□□ -1.19
TRAIPQ9BWF2 AC073387.1-201ENST00000453261 709 ntBASIC7.63□□□□□ -1.19
TRAIPQ9BWF2 MTCO3P16-201ENST00000454456 754 ntBASIC7.63□□□□□ -1.19
TRAIPQ9BWF2 AL157373.1-201ENST00000456036 276 ntTSL 3 BASIC7.63□□□□□ -1.19
TRAIPQ9BWF2 AC005165.2-201ENST00000466070 380 ntBASIC7.63□□□□□ -1.19
TRAIPQ9BWF2 AC147055.4-201ENST00000504399 745 ntBASIC7.63□□□□□ -1.19
TRAIPQ9BWF2 NREP-223ENST00000515855 801 ntTSL 4 BASIC7.63□□□□□ -1.19
TRAIPQ9BWF2 AC105150.1-201ENST00000518011 551 ntTSL 3 BASIC7.63□□□□□ -1.19
TRAIPQ9BWF2 FBXO16-208ENST00000519471 398 ntTSL 2 BASIC7.63□□□□□ -1.19
TRAIPQ9BWF2 AL356215.1-201ENST00000528366 1102 ntTSL 2 BASIC7.63□□□□□ -1.19
TRAIPQ9BWF2 ACER3-213ENST00000533873 929 ntTSL 2 BASIC7.63□□□□□ -1.19
TRAIPQ9BWF2 HSPE1P2-201ENST00000554777 306 ntBASIC7.63□□□□□ -1.19
Retrieved 100 of 98,524 protein–RNA pairs in 94.8 ms