Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 RWDD2A-201ENST00000369724 3744 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
VPS35Q96QK1 RN7SKP124-201ENST00000364730 341 ntBASIC5.51□□□□□ -1.53
VPS35Q96QK1 RN7SKP28-201ENST00000364770 305 ntBASIC5.51□□□□□ -1.53
VPS35Q96QK1 RN7SKP6-201ENST00000364795 319 ntBASIC5.51□□□□□ -1.53
VPS35Q96QK1 RNU4-2-201ENST00000365668 141 ntBASIC5.51□□□□□ -1.53
VPS35Q96QK1 OR2A25-201ENST00000408898 1014 ntAPPRIS P1 BASIC5.51□□□□□ -1.53
VPS35Q96QK1 RN7SKP206-201ENST00000410823 293 ntBASIC5.51□□□□□ -1.53
VPS35Q96QK1 NAP1L4P2-201ENST00000425958 899 ntBASIC5.51□□□□□ -1.53
VPS35Q96QK1 AC015923.1-201ENST00000435892 305 ntTSL 2 BASIC5.51□□□□□ -1.53
VPS35Q96QK1 AC073072.2-201ENST00000447425 348 ntBASIC5.51□□□□□ -1.53
VPS35Q96QK1 AL359265.3-201ENST00000456125 579 ntTSL 5 BASIC5.51□□□□□ -1.53
VPS35Q96QK1 LINC01780-202ENST00000457683 391 ntTSL 3 BASIC5.51□□□□□ -1.53
VPS35Q96QK1 RN7SL174P-201ENST00000475578 289 ntBASIC5.51□□□□□ -1.53
VPS35Q96QK1 TRBV8-1-201ENST00000481590 279 ntBASIC5.51□□□□□ -1.53
VPS35Q96QK1 AC105420.1-201ENST00000504389 582 ntBASIC5.51□□□□□ -1.53
VPS35Q96QK1 IGHVIII-76-1-201ENST00000523776 286 ntBASIC5.51□□□□□ -1.53
VPS35Q96QK1 AC079089.1-202ENST00000528800 1256 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
VPS35Q96QK1 MTND2P17-201ENST00000550281 688 ntBASIC5.51□□□□□ -1.53
VPS35Q96QK1 PSMA4-209ENST00000559082 1094 ntAPPRIS P1 TSL 5 BASIC5.51□□□□□ -1.53
VPS35Q96QK1 AC090617.5-201ENST00000571815 528 ntTSL 3 BASIC5.51□□□□□ -1.53
VPS35Q96QK1 AC103808.4-201ENST00000577258 391 ntTSL 3 BASIC5.51□□□□□ -1.53
VPS35Q96QK1 AL353811.1-202ENST00000602614 618 ntTSL 3 BASIC5.51□□□□□ -1.53
VPS35Q96QK1 TULP3P1-203ENST00000606237 586 ntTSL 4 BASIC5.51□□□□□ -1.53
VPS35Q96QK1 MIR4302-201ENST00000638058 60 ntBASIC5.51□□□□□ -1.53
VPS35Q96QK1 AC079776.5-201ENST00000641920 211 ntBASIC5.51□□□□□ -1.53
VPS35Q96QK1 MROH9-202ENST00000367759 3165 ntAPPRIS ALT2 TSL 5 BASIC5.51□□□□□ -1.53
VPS35Q96QK1 ZNF782-208ENST00000535338 3296 ntAPPRIS P1 TSL 3 BASIC5.51□□□□□ -1.53
VPS35Q96QK1 ENKUR-205ENST00000615958 3294 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
VPS35Q96QK1 ZNF780A-204ENST00000455521 3600 ntAPPRIS ALT2 TSL 5 BASIC5.51□□□□□ -1.53
VPS35Q96QK1 GVINP1-202ENST00000531871 7271 ntBASIC5.51□□□□□ -1.53
VPS35Q96QK1 WDPCP-202ENST00000398544 2063 ntAPPRIS ALT2 TSL 1 (best) BASIC5.51□□□□□ -1.53
VPS35Q96QK1 DSE-204ENST00000452085 10586 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
VPS35Q96QK1 AC233968.1-201ENST00000611212 1300 ntBASIC5.5□□□□□ -1.53
VPS35Q96QK1 SUPT3H-203ENST00000371460 2389 ntAPPRIS P4 TSL 1 (best) BASIC5.5□□□□□ -1.53
VPS35Q96QK1 CASC8-203ENST00000502082 1420 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
VPS35Q96QK1 AC005005.4-201ENST00000623789 16698 ntBASIC5.5□□□□□ -1.53
VPS35Q96QK1 USP15-201ENST00000280377 4748 ntAPPRIS ALT1 TSL 1 (best) BASIC5.5□□□□□ -1.53
VPS35Q96QK1 ANK3-216ENST00000503366 5792 ntAPPRIS ALT2 TSL 2 BASIC5.5□□□□□ -1.53
VPS35Q96QK1 BCL2L14-213ENST00000589718 1850 ntAPPRIS P1 TSL 5 BASIC5.5□□□□□ -1.53
VPS35Q96QK1 NELL2-201ENST00000333837 2943 ntTSL 2 BASIC5.5□□□□□ -1.53
VPS35Q96QK1 HYAL4-202ENST00000476325 1616 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
VPS35Q96QK1 AL353751.1-201ENST00000354541 495 ntTSL 3 BASIC5.5□□□□□ -1.53
VPS35Q96QK1 SPRR2D-201ENST00000360379 682 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
VPS35Q96QK1 RNA5SP242-201ENST00000364171 118 ntBASIC5.5□□□□□ -1.53
VPS35Q96QK1 CDC123-202ENST00000378900 933 ntTSL 5 BASIC5.5□□□□□ -1.53
VPS35Q96QK1 MIR3681HG-202ENST00000412606 578 ntTSL 5 BASIC5.5□□□□□ -1.53
VPS35Q96QK1 AC008060.2-201ENST00000415333 468 ntTSL 3 BASIC5.5□□□□□ -1.53
VPS35Q96QK1 AP000365.1-201ENST00000438850 546 ntTSL 4 BASIC5.5□□□□□ -1.53
VPS35Q96QK1 AC003685.1-201ENST00000440430 466 ntTSL 2 BASIC5.5□□□□□ -1.53
VPS35Q96QK1 AC019185.1-201ENST00000442718 389 ntBASIC5.5□□□□□ -1.53
VPS35Q96QK1 AC092106.1-201ENST00000444291 373 ntBASIC5.5□□□□□ -1.53
VPS35Q96QK1 LINC02210-201ENST00000444561 288 ntBASIC5.5□□□□□ -1.53
VPS35Q96QK1 EIF4A1P6-201ENST00000448133 1210 ntBASIC5.5□□□□□ -1.53
VPS35Q96QK1 LINC01344-202ENST00000449842 571 ntTSL 3 BASIC5.5□□□□□ -1.53
VPS35Q96QK1 LINC01911-201ENST00000450667 806 ntTSL 5 BASIC5.5□□□□□ -1.53
VPS35Q96QK1 AL022329.1-203ENST00000453811 451 ntTSL 3 BASIC5.5□□□□□ -1.53
VPS35Q96QK1 NCK1-AS1-201ENST00000461864 1194 ntTSL 2 BASIC5.5□□□□□ -1.53
VPS35Q96QK1 RN7SL188P-201ENST00000469842 285 ntBASIC5.5□□□□□ -1.53
VPS35Q96QK1 GIMAP2-202ENST00000474605 309 ntTSL 3 BASIC5.5□□□□□ -1.53
VPS35Q96QK1 AL136038.1-201ENST00000497246 351 ntBASIC5.5□□□□□ -1.53
VPS35Q96QK1 CCDC169-211ENST00000503173 837 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
VPS35Q96QK1 AC104212.3-201ENST00000522044 444 ntTSL 3 BASIC5.5□□□□□ -1.53
VPS35Q96QK1 AC138832.1-201ENST00000522871 556 ntBASIC5.5□□□□□ -1.53
VPS35Q96QK1 OR5AM1P-201ENST00000532136 1032 ntBASIC5.5□□□□□ -1.53
VPS35Q96QK1 PIWIL4-203ENST00000537419 831 ntTSL 2 BASIC5.5□□□□□ -1.53
VPS35Q96QK1 LINC00944-202ENST00000540684 888 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
VPS35Q96QK1 AC068993.1-201ENST00000546724 589 ntBASIC5.5□□□□□ -1.53
VPS35Q96QK1 SNORD95-201ENST00000579879 68 ntBASIC5.5□□□□□ -1.53
VPS35Q96QK1 GTSCR1-201ENST00000582578 470 ntTSL 3 BASIC5.5□□□□□ -1.53
VPS35Q96QK1 AC093484.5-201ENST00000585048 304 ntTSL 3 BASIC5.5□□□□□ -1.53
VPS35Q96QK1 PIK3C3-207ENST00000587402 452 ntTSL 3 BASIC5.5□□□□□ -1.53
VPS35Q96QK1 SMIM24-204ENST00000591708 660 ntAPPRIS ALT2 TSL 2 BASIC5.5□□□□□ -1.53
VPS35Q96QK1 AL589674.2-201ENST00000604304 337 ntBASIC5.5□□□□□ -1.53
VPS35Q96QK1 AL713998.2-201ENST00000604538 1198 ntBASIC5.5□□□□□ -1.53
VPS35Q96QK1 AL160400.1-201ENST00000606385 1030 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
VPS35Q96QK1 AC096586.2-201ENST00000610260 441 ntBASIC5.5□□□□□ -1.53
VPS35Q96QK1 AC004477.3-201ENST00000614061 590 ntBASIC5.5□□□□□ -1.53
VPS35Q96QK1 AL118522.2-201ENST00000616045 615 ntBASIC5.5□□□□□ -1.53
VPS35Q96QK1 LINC01320-210ENST00000626008 929 ntTSL 5 BASIC5.5□□□□□ -1.53
VPS35Q96QK1 ENSA-214ENST00000513281 1369 ntTSL 2 BASIC5.5□□□□□ -1.53
VPS35Q96QK1 LINC01179-201ENST00000507838 2163 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
VPS35Q96QK1 DPP8-210ENST00000559233 2953 ntAPPRIS P4 TSL 2 BASIC5.5□□□□□ -1.53
VPS35Q96QK1 IL15-204ENST00000477265 6026 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
VPS35Q96QK1 BLZF1-203ENST00000367808 2749 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
VPS35Q96QK1 KCNJ1-204ENST00000392665 4074 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
VPS35Q96QK1 C5-201ENST00000223642 5465 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
VPS35Q96QK1 TNRC6B-202ENST00000335727 17933 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
VPS35Q96QK1 AC114774.1-201ENST00000507410 1770 ntBASIC5.5□□□□□ -1.53
VPS35Q96QK1 LINC01553-203ENST00000521074 4329 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
VPS35Q96QK1 AC010127.1-209ENST00000447809 2305 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
VPS35Q96QK1 SLC26A3-201ENST00000340010 2863 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
VPS35Q96QK1 AC005154.1-228ENST00000454922 1405 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
VPS35Q96QK1 SYNCRIP-204ENST00000616122 6764 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
VPS35Q96QK1 ZNF518B-201ENST00000326756 6894 ntAPPRIS P1 TSL 3 BASIC5.49□□□□□ -1.53
VPS35Q96QK1 C4orf17-201ENST00000326581 1636 ntAPPRIS P2 TSL 1 (best) BASIC5.49□□□□□ -1.53
VPS35Q96QK1 ALB-220ENST00000621628 1606 ntTSL 5 BASIC5.49□□□□□ -1.53
VPS35Q96QK1 FIRRE-202ENST00000637577 1635 ntTSL 5 BASIC5.49□□□□□ -1.53
VPS35Q96QK1 AL031595.2-201ENST00000624215 19071 ntBASIC5.49□□□□□ -1.53
VPS35Q96QK1 SLFN13-201ENST00000285013 8469 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
VPS35Q96QK1 MKKS-202ENST00000399054 2663 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 72.2 ms