Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 AL035090.1-201ENST00000454835 332 ntBASIC5.74□□□□□ -1.49
CCDC42Q96M95 TRAPPC2-204ENST00000458511 678 ntTSL 5 BASIC5.74□□□□□ -1.49
CCDC42Q96M95 AC011476.1-201ENST00000466725 307 ntBASIC5.74□□□□□ -1.49
CCDC42Q96M95 CBX1P5-201ENST00000475330 559 ntBASIC5.74□□□□□ -1.49
CCDC42Q96M95 AP002884.1-201ENST00000479691 655 ntBASIC5.74□□□□□ -1.49
CCDC42Q96M95 RPL7P41-201ENST00000485823 957 ntBASIC5.74□□□□□ -1.49
CCDC42Q96M95 AC092666.1-203ENST00000495144 698 ntTSL 5 BASIC5.74□□□□□ -1.49
CCDC42Q96M95 AC092349.1-201ENST00000504903 310 ntBASIC5.74□□□□□ -1.49
CCDC42Q96M95 AC068672.3-203ENST00000505166 311 ntTSL 3 BASIC5.74□□□□□ -1.49
CCDC42Q96M95 AP000873.2-204ENST00000530825 375 ntTSL 3 BASIC5.74□□□□□ -1.49
CCDC42Q96M95 TRDV3-201ENST00000535880 425 ntAPPRIS P1 BASIC5.74□□□□□ -1.49
CCDC42Q96M95 AC113208.4-201ENST00000563568 206 ntTSL 3 BASIC5.74□□□□□ -1.49
CCDC42Q96M95 PXT1-202ENST00000619547 619 ntAPPRIS ALT2 TSL 1 (best) BASIC5.74□□□□□ -1.49
CCDC42Q96M95 AL357060.1-201ENST00000638039 977 ntTSL 5 BASIC5.74□□□□□ -1.49
CCDC42Q96M95 PEX2-201ENST00000357039 4317 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
CCDC42Q96M95 TMEM161B-211ENST00000512429 1796 ntTSL 2 BASIC5.74□□□□□ -1.49
CCDC42Q96M95 CASC19-201ENST00000500112 5735 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
CCDC42Q96M95 PPEF1-201ENST00000349874 2687 ntTSL 5 BASIC5.74□□□□□ -1.49
CCDC42Q96M95 ATP1B4-202ENST00000361319 3856 ntAPPRIS P3 TSL 1 (best) BASIC5.74□□□□□ -1.49
CCDC42Q96M95 SAMD12-202ENST00000409003 8866 ntAPPRIS P1 TSL 5 BASIC5.74□□□□□ -1.49
CCDC42Q96M95 IL31RA-204ENST00000396834 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC5.74□□□□□ -1.49
CCDC42Q96M95 C3orf67-AS1-202ENST00000482372 2203 ntTSL 2 BASIC5.74□□□□□ -1.49
CCDC42Q96M95 B3GALT2-201ENST00000367434 3274 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
CCDC42Q96M95 TEX11-201ENST00000344304 2977 ntAPPRIS P3 TSL 5 BASIC5.73□□□□□ -1.49
CCDC42Q96M95 DCLK1-204ENST00000379893 4612 ntTSL 2 BASIC5.73□□□□□ -1.49
CCDC42Q96M95 ZNF845-201ENST00000458035 4311 ntAPPRIS P1 TSL 4 BASIC5.73□□□□□ -1.49
CCDC42Q96M95 PROM1-220ENST00000540805 3908 ntAPPRIS ALT2 TSL 5 BASIC5.73□□□□□ -1.49
CCDC42Q96M95 WDPCP-202ENST00000398544 2063 ntAPPRIS ALT2 TSL 1 (best) BASIC5.73□□□□□ -1.49
CCDC42Q96M95 AFTPH-204ENST00000409933 2811 ntAPPRIS ALT1 TSL 1 (best) BASIC5.73□□□□□ -1.49
CCDC42Q96M95 MYO3A-203ENST00000376302 2723 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
CCDC42Q96M95 CDK15-204ENST00000450471 3659 ntAPPRIS ALT1 TSL 1 (best) BASIC5.73□□□□□ -1.49
CCDC42Q96M95 AC019072.1-201ENST00000604535 1551 ntBASIC5.73□□□□□ -1.49
CCDC42Q96M95 OR7E25P-201ENST00000344844 931 ntBASIC5.73□□□□□ -1.49
CCDC42Q96M95 SNORA16A-201ENST00000384342 137 ntBASIC5.73□□□□□ -1.49
CCDC42Q96M95 LINC00701-201ENST00000418295 742 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
CCDC42Q96M95 RPL6P21-201ENST00000418672 846 ntBASIC5.73□□□□□ -1.49
CCDC42Q96M95 FLJ27354-202ENST00000443562 770 ntTSL 3 BASIC5.73□□□□□ -1.49
CCDC42Q96M95 AL034380.1-201ENST00000448791 306 ntTSL 3 BASIC5.73□□□□□ -1.49
CCDC42Q96M95 AC013733.1-201ENST00000449835 985 ntTSL 4 BASIC5.73□□□□□ -1.49
CCDC42Q96M95 DNAJB5P1-201ENST00000454004 806 ntBASIC5.73□□□□□ -1.49
CCDC42Q96M95 SH3GLB1-202ENST00000482504 1199 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
CCDC42Q96M95 AC093607.1-202ENST00000499715 559 ntTSL 4 BASIC5.73□□□□□ -1.49
CCDC42Q96M95 HMGB1P44-201ENST00000508597 572 ntBASIC5.73□□□□□ -1.49
CCDC42Q96M95 APOBEC3AP1-201ENST00000511396 287 ntBASIC5.73□□□□□ -1.49
CCDC42Q96M95 Vault.2-201ENST00000516519 98 ntBASIC5.73□□□□□ -1.49
CCDC42Q96M95 RN7SKP99-201ENST00000517028 307 ntBASIC5.73□□□□□ -1.49
CCDC42Q96M95 AC010768.4-201ENST00000528183 520 ntTSL 3 BASIC5.73□□□□□ -1.49
CCDC42Q96M95 AP000873.2-207ENST00000529607 452 ntTSL 3 BASIC5.73□□□□□ -1.49
CCDC42Q96M95 AP004607.2-201ENST00000533949 322 ntBASIC5.73□□□□□ -1.49
CCDC42Q96M95 AC079600.1-201ENST00000550326 297 ntBASIC5.73□□□□□ -1.49
CCDC42Q96M95 AL163195.3-202ENST00000555283 578 ntAPPRIS P1 TSL 4 BASIC5.73□□□□□ -1.49
CCDC42Q96M95 LINC02137-203ENST00000567448 930 ntTSL 5 BASIC5.73□□□□□ -1.49
CCDC42Q96M95 AC012588.1-201ENST00000583852 358 ntTSL 3 BASIC5.73□□□□□ -1.49
CCDC42Q96M95 ZNF235-204ENST00000589799 955 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
CCDC42Q96M95 AC010618.3-202ENST00000598141 476 ntTSL 3 BASIC5.73□□□□□ -1.49
CCDC42Q96M95 DEC1-204ENST00000614246 210 ntAPPRIS ALT2 TSL 1 (best) BASIC5.73□□□□□ -1.49
CCDC42Q96M95 AP002008.2-205ENST00000637111 1091 ntTSL 5 BASIC5.73□□□□□ -1.49
CCDC42Q96M95 MIR193BHG-214ENST00000641765 509 ntBASIC5.73□□□□□ -1.49
CCDC42Q96M95 TRPC4-203ENST00000358477 2955 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
CCDC42Q96M95 AC023421.1-201ENST00000590535 1785 ntBASIC5.72□□□□□ -1.49
CCDC42Q96M95 RCOR3-201ENST00000367005 4246 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
CCDC42Q96M95 KCTD16-201ENST00000507359 13950 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
CCDC42Q96M95 OR52B3P-201ENST00000314715 928 ntBASIC5.72□□□□□ -1.49
CCDC42Q96M95 RNA5SP433-201ENST00000364491 114 ntBASIC5.72□□□□□ -1.49
CCDC42Q96M95 AL139095.4-201ENST00000379928 500 ntTSL 2 BASIC5.72□□□□□ -1.49
CCDC42Q96M95 EIF4A1P7-201ENST00000421800 1220 ntBASIC5.72□□□□□ -1.49
CCDC42Q96M95 GSTM5P1-201ENST00000434751 660 ntBASIC5.72□□□□□ -1.49
CCDC42Q96M95 CYCSP24-201ENST00000445119 316 ntBASIC5.72□□□□□ -1.49
CCDC42Q96M95 AL445665.1-202ENST00000452436 324 ntBASIC5.72□□□□□ -1.49
CCDC42Q96M95 CTSLP6-201ENST00000458273 1002 ntBASIC5.72□□□□□ -1.49
CCDC42Q96M95 RN7SL273P-201ENST00000481561 299 ntBASIC5.72□□□□□ -1.49
CCDC42Q96M95 RN7SL814P-201ENST00000487715 300 ntBASIC5.72□□□□□ -1.49
CCDC42Q96M95 NIFKP7-201ENST00000503365 834 ntBASIC5.72□□□□□ -1.49
CCDC42Q96M95 USP9YP2-201ENST00000504503 1000 ntBASIC5.72□□□□□ -1.49
CCDC42Q96M95 AC109481.1-201ENST00000509173 282 ntBASIC5.72□□□□□ -1.49
CCDC42Q96M95 USP9YP1-201ENST00000513521 1002 ntBASIC5.72□□□□□ -1.49
CCDC42Q96M95 NRBF2P4-201ENST00000520874 850 ntBASIC5.72□□□□□ -1.49
CCDC42Q96M95 AC109466.1-202ENST00000523648 748 ntTSL 3 BASIC5.72□□□□□ -1.49
CCDC42Q96M95 AC027026.1-201ENST00000532323 742 ntBASIC5.72□□□□□ -1.49
CCDC42Q96M95 ANAPC15-205ENST00000535503 734 ntAPPRIS P3 TSL 3 BASIC5.72□□□□□ -1.49
CCDC42Q96M95 AC007527.1-202ENST00000543347 382 ntTSL 3 BASIC5.72□□□□□ -1.49
CCDC42Q96M95 AC025419.1-207ENST00000546198 1072 ntTSL 3 BASIC5.72□□□□□ -1.49
CCDC42Q96M95 AC005341.1-201ENST00000571086 708 ntBASIC5.72□□□□□ -1.49
CCDC42Q96M95 MIR744-201ENST00000578242 98 ntBASIC5.72□□□□□ -1.49
CCDC42Q96M95 AP005242.1-201ENST00000583946 467 ntTSL 3 BASIC5.72□□□□□ -1.49
CCDC42Q96M95 AL160400.1-201ENST00000606385 1030 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
CCDC42Q96M95 AL163952.1-201ENST00000612704 916 ntTSL 5 BASIC5.72□□□□□ -1.49
CCDC42Q96M95 AC008115.3-201ENST00000614874 549 ntBASIC5.72□□□□□ -1.49
CCDC42Q96M95 AC129915.3-201ENST00000634128 948 ntBASIC5.72□□□□□ -1.49
CCDC42Q96M95 VPS41-203ENST00000395969 3181 ntTSL 5 BASIC5.72□□□□□ -1.49
CCDC42Q96M95 DNAH12-203ENST00000389536 2613 ntTSL 5 BASIC5.72□□□□□ -1.49
CCDC42Q96M95 GPR1-201ENST00000407325 2295 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
CCDC42Q96M95 STXBP4-202ENST00000398391 2160 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
CCDC42Q96M95 AL022322.2-201ENST00000624072 20397 ntBASIC5.71□□□□□ -1.49
CCDC42Q96M95 HERC4-205ENST00000412272 4211 ntTSL 1 (best) BASIC5.71□□□□□ -1.49
CCDC42Q96M95 PMS2-203ENST00000382321 1386 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
CCDC42Q96M95 TRAPPC11-209ENST00000512476 2546 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
CCDC42Q96M95 GABRG2-224ENST00000640574 3150 ntTSL 5 BASIC5.71□□□□□ -1.5
CCDC42Q96M95 GLYAT-201ENST00000278400 1150 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
CCDC42Q96M95 AC017079.1-201ENST00000333650 415 ntBASIC5.71□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 97.6 ms