Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 AC073464.3-201ENST00000422564 712 ntBASIC5.69□□□□□ -1.5
COL28A1Q2UY09 AC244394.2-201ENST00000425109 735 ntTSL 5 BASIC5.69□□□□□ -1.5
COL28A1Q2UY09 AC127526.2-201ENST00000426436 775 ntBASIC5.69□□□□□ -1.5
COL28A1Q2UY09 AC137630.2-202ENST00000429681 555 ntTSL 3 BASIC5.69□□□□□ -1.5
COL28A1Q2UY09 AC126120.1-201ENST00000431082 470 ntBASIC5.69□□□□□ -1.5
COL28A1Q2UY09 MTND4LP7-201ENST00000431728 294 ntBASIC5.69□□□□□ -1.5
COL28A1Q2UY09 AP000949.1-201ENST00000438328 629 ntBASIC5.69□□□□□ -1.5
COL28A1Q2UY09 CNOT7P2-201ENST00000441051 832 ntBASIC5.69□□□□□ -1.5
COL28A1Q2UY09 AL022237.1-201ENST00000446663 358 ntBASIC5.69□□□□□ -1.5
COL28A1Q2UY09 NREP-207ENST00000450761 636 ntAPPRIS P1 TSL 4 BASIC5.69□□□□□ -1.5
COL28A1Q2UY09 RPL7P61-201ENST00000451721 751 ntBASIC5.69□□□□□ -1.5
COL28A1Q2UY09 LINC01436-201ENST00000457157 1048 ntTSL 2 BASIC5.69□□□□□ -1.5
COL28A1Q2UY09 AC006463.2-201ENST00000473326 348 ntBASIC5.69□□□□□ -1.5
COL28A1Q2UY09 RPL7AP6-201ENST00000477943 801 ntBASIC5.69□□□□□ -1.5
COL28A1Q2UY09 RPL15P21-201ENST00000495592 567 ntBASIC5.69□□□□□ -1.5
COL28A1Q2UY09 AC024587.2-201ENST00000509458 805 ntTSL 3 BASIC5.69□□□□□ -1.5
COL28A1Q2UY09 AC097537.1-201ENST00000514864 1213 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
COL28A1Q2UY09 CDC42P3-201ENST00000518493 633 ntBASIC5.69□□□□□ -1.5
COL28A1Q2UY09 AP000873.2-205ENST00000529031 435 ntTSL 2 BASIC5.69□□□□□ -1.5
COL28A1Q2UY09 OR5D15P-201ENST00000531671 942 ntBASIC5.69□□□□□ -1.5
COL28A1Q2UY09 RPA2P3-201ENST00000533268 770 ntBASIC5.69□□□□□ -1.5
COL28A1Q2UY09 AC134349.2-201ENST00000535136 910 ntBASIC5.69□□□□□ -1.5
COL28A1Q2UY09 AP001858.2-201ENST00000536213 601 ntBASIC5.69□□□□□ -1.5
COL28A1Q2UY09 AC092865.1-201ENST00000544395 1023 ntBASIC5.69□□□□□ -1.5
COL28A1Q2UY09 AC008147.3-201ENST00000548666 354 ntBASIC5.69□□□□□ -1.5
COL28A1Q2UY09 AL356801.1-201ENST00000559320 294 ntBASIC5.69□□□□□ -1.5
COL28A1Q2UY09 MIR4436B2-201ENST00000581415 91 ntBASIC5.69□□□□□ -1.5
COL28A1Q2UY09 MIR4436B1-201ENST00000583272 91 ntBASIC5.69□□□□□ -1.5
COL28A1Q2UY09 AC012588.1-201ENST00000583852 358 ntTSL 3 BASIC5.69□□□□□ -1.5
COL28A1Q2UY09 AC243960.1-203ENST00000595395 599 ntTSL 4 BASIC5.69□□□□□ -1.5
COL28A1Q2UY09 AL645933.2-201ENST00000606743 1207 ntBASIC5.69□□□□□ -1.5
COL28A1Q2UY09 AL136131.3-201ENST00000607600 188 ntBASIC5.69□□□□□ -1.5
COL28A1Q2UY09 AL121612.2-201ENST00000612261 482 ntBASIC5.69□□□□□ -1.5
COL28A1Q2UY09 AP003499.2-201ENST00000624100 483 ntBASIC5.69□□□□□ -1.5
COL28A1Q2UY09 LINC01708-202ENST00000634316 859 ntTSL 5 BASIC5.69□□□□□ -1.5
COL28A1Q2UY09 AC024651.2-201ENST00000562480 2098 ntBASIC5.69□□□□□ -1.5
COL28A1Q2UY09 N4BP2L2-204ENST00000399396 2872 ntTSL 5 BASIC5.69□□□□□ -1.5
COL28A1Q2UY09 LINC01153-201ENST00000429809 2864 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
COL28A1Q2UY09 KCNJ1-204ENST00000392665 4074 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
COL28A1Q2UY09 AC131971.1-201ENST00000332881 1482 ntBASIC5.69□□□□□ -1.5
COL28A1Q2UY09 DYNC1I2-202ENST00000397119 2604 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
COL28A1Q2UY09 TRIP12-204ENST00000389045 5355 ntAPPRIS ALT2 TSL 1 (best) BASIC5.69□□□□□ -1.5
COL28A1Q2UY09 GYPA-212ENST00000616983 2538 ntAPPRIS ALT2 TSL 5 BASIC5.69□□□□□ -1.5
COL28A1Q2UY09 METTL9-211ENST00000615720 2890 ntTSL 2 BASIC5.69□□□□□ -1.5
COL28A1Q2UY09 SGO1-202ENST00000306698 1531 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
COL28A1Q2UY09 AC068446.1-201ENST00000556425 1549 ntBASIC5.69□□□□□ -1.5
COL28A1Q2UY09 ADGRL3-210ENST00000508946 4758 ntAPPRIS ALT2 TSL 5 BASIC5.68□□□□□ -1.5
COL28A1Q2UY09 PUM1-207ENST00000440538 3936 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
COL28A1Q2UY09 SYCP1-201ENST00000369518 3452 ntAPPRIS P1 TSL 5 BASIC5.68□□□□□ -1.5
COL28A1Q2UY09 BCORP1-202ENST00000441139 3461 ntTSL 2 BASIC5.68□□□□□ -1.5
COL28A1Q2UY09 PREPL-216ENST00000541738 6049 ntTSL 2 BASIC5.68□□□□□ -1.5
COL28A1Q2UY09 IL21-AS1-201ENST00000417927 3748 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
COL28A1Q2UY09 LARP7-210ENST00000509061 2332 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
COL28A1Q2UY09 DTNA-230ENST00000598334 3201 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
COL28A1Q2UY09 PIH1D2-201ENST00000280350 1241 ntAPPRIS P1 TSL 5 BASIC5.68□□□□□ -1.5
COL28A1Q2UY09 SELENOWP1-201ENST00000322792 252 ntBASIC5.68□□□□□ -1.5
COL28A1Q2UY09 TCEAL7-201ENST00000332431 1177 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
COL28A1Q2UY09 LIX1L-AS1-201ENST00000366105 377 ntTSL 5 BASIC5.68□□□□□ -1.5
COL28A1Q2UY09 ARV1-202ENST00000366658 1170 ntTSL 5 BASIC5.68□□□□□ -1.5
COL28A1Q2UY09 RN7SKP213-201ENST00000410746 298 ntBASIC5.68□□□□□ -1.5
COL28A1Q2UY09 FAR2P2-201ENST00000413041 594 ntBASIC5.68□□□□□ -1.5
COL28A1Q2UY09 OR6E1P-201ENST00000414424 923 ntBASIC5.68□□□□□ -1.5
COL28A1Q2UY09 LINC01740-201ENST00000423842 332 ntTSL 2 BASIC5.68□□□□□ -1.5
COL28A1Q2UY09 FAR2P4-202ENST00000425399 584 ntBASIC5.68□□□□□ -1.5
COL28A1Q2UY09 PIH1D2-202ENST00000431456 1245 ntTSL 5 BASIC5.68□□□□□ -1.5
COL28A1Q2UY09 Z84478.1-201ENST00000438230 1219 ntBASIC5.68□□□□□ -1.5
COL28A1Q2UY09 AL390879.1-201ENST00000439143 386 ntBASIC5.68□□□□□ -1.5
COL28A1Q2UY09 LINC01828-201ENST00000445514 531 ntTSL 4 BASIC5.68□□□□□ -1.5
COL28A1Q2UY09 FAR2P1-206ENST00000449736 709 ntBASIC5.68□□□□□ -1.5
COL28A1Q2UY09 AC009963.2-201ENST00000453431 138 ntBASIC5.68□□□□□ -1.5
COL28A1Q2UY09 HIGD1AP8-201ENST00000453927 274 ntBASIC5.68□□□□□ -1.5
COL28A1Q2UY09 GEMIN2P1-201ENST00000454246 752 ntBASIC5.68□□□□□ -1.5
COL28A1Q2UY09 CYP4F62P-203ENST00000455215 552 ntTSL 4 BASIC5.68□□□□□ -1.5
COL28A1Q2UY09 RN7SL172P-201ENST00000460535 303 ntBASIC5.68□□□□□ -1.5
COL28A1Q2UY09 EIF2S2P4-201ENST00000461070 984 ntBASIC5.68□□□□□ -1.5
COL28A1Q2UY09 PEX5L-AS2-201ENST00000462801 630 ntTSL 2 BASIC5.68□□□□□ -1.5
COL28A1Q2UY09 AL355032.1-201ENST00000472981 438 ntBASIC5.68□□□□□ -1.5
COL28A1Q2UY09 MORC1-AS1-201ENST00000480826 564 ntTSL 2 BASIC5.68□□□□□ -1.5
COL28A1Q2UY09 RPSAP50-201ENST00000481955 852 ntBASIC5.68□□□□□ -1.5
COL28A1Q2UY09 SOX2-OT-216ENST00000497122 578 ntTSL 4 BASIC5.68□□□□□ -1.5
COL28A1Q2UY09 RFPL4AP3-201ENST00000515267 345 ntBASIC5.68□□□□□ -1.5
COL28A1Q2UY09 SNORA43.3-201ENST00000517240 103 ntBASIC5.68□□□□□ -1.5
COL28A1Q2UY09 OR8G3P-201ENST00000533406 921 ntBASIC5.68□□□□□ -1.5
COL28A1Q2UY09 CLEC2B-202ENST00000538152 745 ntTSL 2 BASIC5.68□□□□□ -1.5
COL28A1Q2UY09 AC092868.3-201ENST00000560515 784 ntBASIC5.68□□□□□ -1.5
COL28A1Q2UY09 OR4H6P-201ENST00000563771 921 ntBASIC5.68□□□□□ -1.5
COL28A1Q2UY09 MTND2P13-201ENST00000577438 1039 ntBASIC5.68□□□□□ -1.5
COL28A1Q2UY09 AL021368.3-201ENST00000607119 578 ntBASIC5.68□□□□□ -1.5
COL28A1Q2UY09 AC023490.1-202ENST00000620909 820 ntTSL 5 BASIC5.68□□□□□ -1.5
COL28A1Q2UY09 AC084816.1-204ENST00000628326 631 ntTSL 5 BASIC5.68□□□□□ -1.5
COL28A1Q2UY09 HIF1AN-201ENST00000299163 13011 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
COL28A1Q2UY09 AMOT-206ENST00000524145 3330 ntAPPRIS ALT2 TSL 5 BASIC5.68□□□□□ -1.5
COL28A1Q2UY09 MEPE-209ENST00000560249 2206 ntAPPRIS ALT2 TSL 1 (best) BASIC5.68□□□□□ -1.5
COL28A1Q2UY09 RYR3-201ENST00000389232 15552 ntAPPRIS ALT2 TSL 5 BASIC5.68□□□□□ -1.5
COL28A1Q2UY09 OSBPL9-206ENST00000453295 2842 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
COL28A1Q2UY09 OR6C4-202ENST00000641569 5141 ntAPPRIS P1 BASIC5.68□□□□□ -1.5
COL28A1Q2UY09 MDN1-201ENST00000369393 18413 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
COL28A1Q2UY09 CFAP47-202ENST00000313548 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC5.68□□□□□ -1.5
COL28A1Q2UY09 TEX41-207ENST00000445791 4635 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
COL28A1Q2UY09 CAMSAP2-201ENST00000236925 7161 ntAPPRIS ALT2 TSL 1 (best) BASIC5.68□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 143.4 ms