Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 OR10A6-204ENST00000642108 6104 ntAPPRIS P1 BASIC7.05□□□□□ -1.28
LIG3P49916 TRPM7-201ENST00000313478 10400 ntAPPRIS P3 TSL 1 (best) BASIC7.05□□□□□ -1.28
LIG3P49916 AC011503.2-201ENST00000594230 1500 ntBASIC7.05□□□□□ -1.28
LIG3P49916 CDC7-203ENST00000428239 3313 ntAPPRIS P1 TSL 1 (best) BASIC7.05□□□□□ -1.28
LIG3P49916 TPMT-201ENST00000309983 3181 ntAPPRIS P1 TSL 1 (best) BASIC7.05□□□□□ -1.28
LIG3P49916 LRRC37B-201ENST00000327564 3162 ntAPPRIS ALT2 TSL 1 (best) BASIC7.05□□□□□ -1.28
LIG3P49916 AC123769.1-201ENST00000530992 3192 ntBASIC7.05□□□□□ -1.28
LIG3P49916 MYO3B-202ENST00000408978 5529 ntAPPRIS P3 TSL 1 (best) BASIC7.05□□□□□ -1.28
LIG3P49916 KIAA1524-207ENST00000619684 2839 ntAPPRIS ALT1 TSL 5 BASIC7.05□□□□□ -1.28
LIG3P49916 AC125793.1-201ENST00000565238 1493 ntTSL 1 (best) BASIC7.04□□□□□ -1.28
LIG3P49916 ST7-204ENST00000393444 2113 ntTSL 1 (best) BASIC7.04□□□□□ -1.28
LIG3P49916 PSMC6-219ENST00000612399 1590 ntAPPRIS P2 TSL 1 (best) BASIC7.04□□□□□ -1.28
LIG3P49916 GTDC1-207ENST00000409298 2209 ntTSL 5 BASIC7.04□□□□□ -1.28
LIG3P49916 PCDH11Y-204ENST00000400457 9039 ntAPPRIS P5 TSL 1 (best) BASIC7.04□□□□□ -1.28
LIG3P49916 CDON-201ENST00000263577 4186 ntAPPRIS P3 TSL 1 (best) BASIC7.04□□□□□ -1.28
LIG3P49916 HHLA2-210ENST00000491820 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC7.04□□□□□ -1.28
LIG3P49916 NEMP2-202ENST00000409150 6168 ntAPPRIS P1 TSL 2 BASIC7.04□□□□□ -1.28
LIG3P49916 BDNF-203ENST00000395978 3988 ntAPPRIS P1 TSL 1 (best) BASIC7.04□□□□□ -1.28
LIG3P49916 GCNT2-201ENST00000265012 4214 ntAPPRIS P3 TSL 1 (best) BASIC7.04□□□□□ -1.28
LIG3P49916 SPA17-201ENST00000227135 853 ntAPPRIS P1 TSL 1 (best) BASIC7.04□□□□□ -1.28
LIG3P49916 ZC2HC1B-201ENST00000237275 1002 ntAPPRIS P1 TSL 1 (best) BASIC7.04□□□□□ -1.28
LIG3P49916 OCM2-201ENST00000257627 696 ntAPPRIS P1 TSL 1 (best) BASIC7.04□□□□□ -1.28
LIG3P49916 GUCY2C-201ENST00000261170 3844 ntAPPRIS P1 TSL 1 (best) BASIC7.04□□□□□ -1.28
LIG3P49916 OR56A4-201ENST00000330728 1209 ntBASIC7.04□□□□□ -1.28
LIG3P49916 RNA5SP514-201ENST00000363717 111 ntBASIC7.04□□□□□ -1.28
LIG3P49916 RAET1L-202ENST00000367341 1285 ntAPPRIS P1 TSL 1 (best) BASIC7.04□□□□□ -1.28
LIG3P49916 SNORA70H-201ENST00000383910 135 ntBASIC7.04□□□□□ -1.28
LIG3P49916 SNORA70J-201ENST00000384182 135 ntBASIC7.04□□□□□ -1.28
LIG3P49916 MIR187-201ENST00000385062 109 ntBASIC7.04□□□□□ -1.28
LIG3P49916 AC098872.1-201ENST00000413304 543 ntTSL 3 BASIC7.04□□□□□ -1.28
LIG3P49916 LINC01442-201ENST00000414201 704 ntTSL 2 BASIC7.04□□□□□ -1.28
LIG3P49916 ELOCP17-201ENST00000414751 326 ntBASIC7.04□□□□□ -1.28
LIG3P49916 AL807757.2-201ENST00000416455 779 ntTSL 3 BASIC7.04□□□□□ -1.28
LIG3P49916 PAICSP7-201ENST00000419829 962 ntBASIC7.04□□□□□ -1.28
LIG3P49916 AL021026.1-201ENST00000422841 658 ntTSL 3 BASIC7.04□□□□□ -1.28
LIG3P49916 PUDPP2-201ENST00000431423 643 ntBASIC7.04□□□□□ -1.28
LIG3P49916 AC234064.1-201ENST00000436312 247 ntBASIC7.04□□□□□ -1.28
LIG3P49916 LINC01681-201ENST00000439184 760 ntTSL 2 BASIC7.04□□□□□ -1.28
LIG3P49916 OR51P1P-201ENST00000447547 942 ntBASIC7.04□□□□□ -1.28
LIG3P49916 AC009244.1-201ENST00000450566 258 ntBASIC7.04□□□□□ -1.28
LIG3P49916 AL034399.1-201ENST00000451535 380 ntBASIC7.04□□□□□ -1.28
LIG3P49916 Z99127.1-201ENST00000452442 670 ntTSL 5 BASIC7.04□□□□□ -1.28
LIG3P49916 RPL7P1-201ENST00000468161 747 ntBASIC7.04□□□□□ -1.28
LIG3P49916 RPL7P9-201ENST00000468715 747 ntBASIC7.04□□□□□ -1.28
LIG3P49916 AC037198.2-201ENST00000478845 733 ntBASIC7.04□□□□□ -1.28
LIG3P49916 RPL5P14-201ENST00000494197 878 ntBASIC7.04□□□□□ -1.28
LIG3P49916 RPS6P4-201ENST00000494693 758 ntBASIC7.04□□□□□ -1.28
LIG3P49916 H3F3AP3-201ENST00000497682 407 ntBASIC7.04□□□□□ -1.28
LIG3P49916 EGFLAM-AS3-201ENST00000505267 549 ntTSL 5 BASIC7.04□□□□□ -1.28
LIG3P49916 AC104108.1-201ENST00000509930 412 ntBASIC7.04□□□□□ -1.28
LIG3P49916 LINC02241-202ENST00000512688 467 ntTSL 3 BASIC7.04□□□□□ -1.28
LIG3P49916 AC007876.1-201ENST00000527562 983 ntTSL 1 (best) BASIC7.04□□□□□ -1.28
LIG3P49916 OR9L1P-201ENST00000529493 933 ntBASIC7.04□□□□□ -1.28
LIG3P49916 LINC02398-201ENST00000536666 431 ntTSL 3 BASIC7.04□□□□□ -1.28
LIG3P49916 YWHABP2-201ENST00000540201 713 ntBASIC7.04□□□□□ -1.28
LIG3P49916 NPIPB1P-201ENST00000547442 1129 ntTSL 5 BASIC7.04□□□□□ -1.28
LIG3P49916 AC068305.2-201ENST00000550567 1205 ntBASIC7.04□□□□□ -1.28
LIG3P49916 AC073591.1-201ENST00000552736 597 ntTSL 3 BASIC7.04□□□□□ -1.28
LIG3P49916 AL161757.4-202ENST00000557467 737 ntTSL 3 BASIC7.04□□□□□ -1.28
LIG3P49916 AC138207.5-201ENST00000579561 409 ntTSL 3 BASIC7.04□□□□□ -1.28
LIG3P49916 AC138207.8-206ENST00000580053 637 ntTSL 5 BASIC7.04□□□□□ -1.28
LIG3P49916 LINC01919-203ENST00000581198 598 ntTSL 3 BASIC7.04□□□□□ -1.28
LIG3P49916 AC005837.2-201ENST00000587459 479 ntAPPRIS P1 TSL 5 BASIC7.04□□□□□ -1.28
LIG3P49916 Z98949.1-204ENST00000595102 731 ntTSL 5 BASIC7.04□□□□□ -1.28
LIG3P49916 BUB1P1-201ENST00000603541 607 ntBASIC7.04□□□□□ -1.28
LIG3P49916 AL008729.1-201ENST00000606627 553 ntTSL 4 BASIC7.04□□□□□ -1.28
LIG3P49916 AC239809.3-208ENST00000611452 531 ntTSL 5 BASIC7.04□□□□□ -1.28
LIG3P49916 MIR6070-201ENST00000613967 103 ntBASIC7.04□□□□□ -1.28
LIG3P49916 Z83818.2-201ENST00000635331 433 ntTSL 3 BASIC7.04□□□□□ -1.28
LIG3P49916 SPTY2D1-AS1-206ENST00000636011 853 ntAPPRIS ALT2 TSL 5 BASIC7.04□□□□□ -1.28
LIG3P49916 OR56A4-203ENST00000641279 1209 ntAPPRIS P1 BASIC7.04□□□□□ -1.28
LIG3P49916 AP005901.5-201ENST00000545779 1796 ntBASIC7.04□□□□□ -1.28
LIG3P49916 MAPK10-287ENST00000641217 3037 ntBASIC7.04□□□□□ -1.28
LIG3P49916 VPS35-201ENST00000299138 6790 ntAPPRIS P1 TSL 1 (best) BASIC7.04□□□□□ -1.28
LIG3P49916 PLCE1-203ENST00000371385 6500 ntAPPRIS ALT2 TSL 5 BASIC7.04□□□□□ -1.28
LIG3P49916 TPTE2P2-201ENST00000403471 1466 ntBASIC7.04□□□□□ -1.28
LIG3P49916 CBLB-205ENST00000407712 1493 ntTSL 2 BASIC7.04□□□□□ -1.28
LIG3P49916 AP000688.2-201ENST00000422473 2336 ntTSL 2 BASIC7.04□□□□□ -1.28
LIG3P49916 ICE2P1-201ENST00000512800 1849 ntBASIC7.04□□□□□ -1.28
LIG3P49916 CDH18-205ENST00000506372 2432 ntTSL 1 (best) BASIC7.03□□□□□ -1.28
LIG3P49916 DCX-211ENST00000637570 6162 ntAPPRIS ALT1 TSL 5 BASIC7.03□□□□□ -1.28
LIG3P49916 NUP210L-201ENST00000271854 5424 ntAPPRIS ALT2 TSL 5 BASIC7.03□□□□□ -1.28
LIG3P49916 AL512353.3-201ENST00000417517 1326 ntBASIC7.03□□□□□ -1.28
LIG3P49916 EEF1A1P21-201ENST00000512363 1344 ntBASIC7.03□□□□□ -1.28
LIG3P49916 CEACAM1-213ENST00000599389 1342 ntTSL 5 BASIC7.03□□□□□ -1.28
LIG3P49916 HSPD1P8-201ENST00000400121 1658 ntBASIC7.03□□□□□ -1.28
LIG3P49916 AL050403.1-201ENST00000448859 2006 ntTSL 1 (best) BASIC7.03□□□□□ -1.28
LIG3P49916 ZNF615-204ENST00000594083 4020 ntAPPRIS ALT2 TSL 1 (best) BASIC7.03□□□□□ -1.28
LIG3P49916 CABS1-201ENST00000273936 1532 ntAPPRIS P1 TSL 1 (best) BASIC7.03□□□□□ -1.28
LIG3P49916 LINC01722-201ENST00000456265 3033 ntTSL 1 (best) BASIC7.03□□□□□ -1.28
LIG3P49916 AC087516.2-201ENST00000558963 3042 ntTSL 3 BASIC7.03□□□□□ -1.28
LIG3P49916 CLCN3-204ENST00000504131 5592 ntTSL 5 BASIC7.03□□□□□ -1.28
LIG3P49916 CDY19P-201ENST00000411668 1613 ntBASIC7.03□□□□□ -1.28
LIG3P49916 CDY18P-201ENST00000438294 1609 ntBASIC7.03□□□□□ -1.28
LIG3P49916 ZNF26-202ENST00000534834 4853 ntAPPRIS ALT2 TSL 2 BASIC7.03□□□□□ -1.28
LIG3P49916 DNHD1-212ENST00000527990 14298 ntAPPRIS P1 TSL 5 BASIC7.03□□□□□ -1.28
LIG3P49916 KLRC4-201ENST00000309384 930 ntAPPRIS P1 TSL 1 (best) BASIC7.03□□□□□ -1.28
LIG3P49916 IL6STP1-201ENST00000346911 1020 ntBASIC7.03□□□□□ -1.28
LIG3P49916 SPRR2E-202ENST00000368751 692 ntAPPRIS P1 TSL 1 (best) BASIC7.03□□□□□ -1.28
LIG3P49916 PAGE2B-201ENST00000374971 493 ntAPPRIS P1 TSL 1 (best) BASIC7.03□□□□□ -1.28
Retrieved 100 of 98,524 protein–RNA pairs in 100.5 ms