Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 IFNA8-201ENST00000380205 1039 ntAPPRIS P1 BASIC4.87□□□□□ -1.63
HOXA1P49639 AC003045.1-201ENST00000398779 713 ntBASIC4.87□□□□□ -1.63
HOXA1P49639 MIR1266-201ENST00000408125 84 ntBASIC4.87□□□□□ -1.63
HOXA1P49639 DHFRP2-201ENST00000414224 547 ntBASIC4.87□□□□□ -1.63
HOXA1P49639 LINC01945-201ENST00000419784 840 ntTSL 2 BASIC4.87□□□□□ -1.63
HOXA1P49639 OSTCP4-201ENST00000424397 449 ntBASIC4.87□□□□□ -1.63
HOXA1P49639 RPS7P14-201ENST00000426405 583 ntBASIC4.87□□□□□ -1.63
HOXA1P49639 AC104463.2-201ENST00000428573 314 ntTSL 5 BASIC4.87□□□□□ -1.63
HOXA1P49639 LINC01372-201ENST00000430244 489 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
HOXA1P49639 AC007563.3-201ENST00000433233 371 ntBASIC4.87□□□□□ -1.63
HOXA1P49639 FBXW12-203ENST00000436231 1117 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
HOXA1P49639 OR3D1P-201ENST00000438288 955 ntBASIC4.87□□□□□ -1.63
HOXA1P49639 AL139161.2-201ENST00000438371 740 ntTSL 3 BASIC4.87□□□□□ -1.63
HOXA1P49639 AC234771.4-201ENST00000441416 730 ntBASIC4.87□□□□□ -1.63
HOXA1P49639 AC245517.2-201ENST00000442890 346 ntBASIC4.87□□□□□ -1.63
HOXA1P49639 CUBNP2-201ENST00000443534 1139 ntBASIC4.87□□□□□ -1.63
HOXA1P49639 OSBPL10-AS1-205ENST00000444503 526 ntTSL 4 BASIC4.87□□□□□ -1.63
HOXA1P49639 AC022387.1-201ENST00000444770 794 ntTSL 3 BASIC4.87□□□□□ -1.63
HOXA1P49639 RAB28P3-201ENST00000448325 597 ntBASIC4.87□□□□□ -1.63
HOXA1P49639 ACA64.4-201ENST00000459070 127 ntBASIC4.87□□□□□ -1.63
HOXA1P49639 TFP1-201ENST00000460564 572 ntTSL 4 BASIC4.87□□□□□ -1.63
HOXA1P49639 RN7SL39P-201ENST00000462264 297 ntBASIC4.87□□□□□ -1.63
HOXA1P49639 RPL23AP40-201ENST00000487630 390 ntBASIC4.87□□□□□ -1.63
HOXA1P49639 TFP1-203ENST00000490470 561 ntTSL 4 BASIC4.87□□□□□ -1.63
HOXA1P49639 CCDC11P1-201ENST00000503137 1162 ntBASIC4.87□□□□□ -1.63
HOXA1P49639 RPEP1-201ENST00000504507 658 ntBASIC4.87□□□□□ -1.63
HOXA1P49639 LINC02485-202ENST00000511899 770 ntTSL 3 BASIC4.87□□□□□ -1.63
HOXA1P49639 AC025766.1-201ENST00000514061 409 ntTSL 5 BASIC4.87□□□□□ -1.63
HOXA1P49639 RN7SKP288-201ENST00000516227 268 ntBASIC4.87□□□□□ -1.63
HOXA1P49639 PKIA-AS1-201ENST00000519242 995 ntTSL 5 BASIC4.87□□□□□ -1.63
HOXA1P49639 AC008575.1-201ENST00000520401 694 ntAPPRIS P1 TSL 3 BASIC4.87□□□□□ -1.63
HOXA1P49639 AP000873.2-205ENST00000529031 435 ntTSL 2 BASIC4.87□□□□□ -1.63
HOXA1P49639 PARPBP-212ENST00000543784 992 ntTSL 2 BASIC4.87□□□□□ -1.63
HOXA1P49639 AC233266.2-201ENST00000567067 528 ntBASIC4.87□□□□□ -1.63
HOXA1P49639 AC024361.3-201ENST00000570919 333 ntTSL 5 BASIC4.87□□□□□ -1.63
HOXA1P49639 AC135178.3-202ENST00000580537 579 ntTSL 3 BASIC4.87□□□□□ -1.63
HOXA1P49639 AC012593.1-208ENST00000587791 696 ntTSL 5 BASIC4.87□□□□□ -1.63
HOXA1P49639 AC006262.3-201ENST00000597337 258 ntTSL 3 BASIC4.87□□□□□ -1.63
HOXA1P49639 AC141002.1-201ENST00000607025 279 ntBASIC4.87□□□□□ -1.63
HOXA1P49639 AC005828.7-201ENST00000607331 556 ntBASIC4.87□□□□□ -1.63
HOXA1P49639 U91328.4-201ENST00000608919 517 ntBASIC4.87□□□□□ -1.63
HOXA1P49639 AL162574.1-201ENST00000615702 950 ntBASIC4.87□□□□□ -1.63
HOXA1P49639 PCDHB2-203ENST00000624874 565 ntTSL 5 BASIC4.87□□□□□ -1.63
HOXA1P49639 LYRM2-211ENST00000626778 696 ntTSL 5 BASIC4.87□□□□□ -1.63
HOXA1P49639 GVQW2-203ENST00000641401 327 ntAPPRIS P1 BASIC4.87□□□□□ -1.63
HOXA1P49639 LYRM2-208ENST00000523377 5353 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
HOXA1P49639 LARP7-210ENST00000509061 2332 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
HOXA1P49639 THAP12P9-201ENST00000503971 2360 ntBASIC4.87□□□□□ -1.63
HOXA1P49639 ZNF285-204ENST00000591679 2388 ntAPPRIS ALT2 TSL 4 BASIC4.87□□□□□ -1.63
HOXA1P49639 TCF12-214ENST00000559710 1314 ntTSL 2 BASIC4.87□□□□□ -1.63
HOXA1P49639 CA1-225ENST00000626824 2405 ntTSL 5 BASIC4.87□□□□□ -1.63
HOXA1P49639 MARCH1-202ENST00000339875 2476 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
HOXA1P49639 OFD1P15Y-201ENST00000411536 1392 ntBASIC4.87□□□□□ -1.63
HOXA1P49639 C17orf105-201ENST00000449302 3753 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
HOXA1P49639 SCRG1-201ENST00000296506 4420 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
HOXA1P49639 RRH-201ENST00000317735 1455 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
HOXA1P49639 RGS6-204ENST00000404301 1497 ntAPPRIS ALT1 TSL 1 (best) BASIC4.87□□□□□ -1.63
HOXA1P49639 RGS6-206ENST00000407322 1497 ntAPPRIS ALT1 TSL 1 (best) BASIC4.87□□□□□ -1.63
HOXA1P49639 PIP5K1B-201ENST00000265382 2654 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
HOXA1P49639 LEPR-205ENST00000371060 5135 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
HOXA1P49639 STYX-202ENST00000442123 4554 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
HOXA1P49639 SMG1P4-204ENST00000523028 4131 ntBASIC4.87□□□□□ -1.63
HOXA1P49639 RPGRIP1L-201ENST00000262135 8195 ntAPPRIS P3 TSL 5 BASIC4.86□□□□□ -1.63
HOXA1P49639 HYDIN-201ENST00000288168 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC4.86□□□□□ -1.63
HOXA1P49639 RNF19A-205ENST00000519449 4330 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
HOXA1P49639 FSHB-202ENST00000417547 1890 ntAPPRIS P1 TSL 5 BASIC4.86□□□□□ -1.63
HOXA1P49639 PWRN2-202ENST00000567246 4295 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
HOXA1P49639 OR10R3P-201ENST00000361688 942 ntBASIC4.86□□□□□ -1.63
HOXA1P49639 GGA1-205ENST00000405147 575 ntTSL 4 BASIC4.86□□□□□ -1.63
HOXA1P49639 BCL11A-205ENST00000409351 756 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
HOXA1P49639 RN7SKP166-201ENST00000410812 305 ntBASIC4.86□□□□□ -1.63
HOXA1P49639 LINC01811-201ENST00000415991 594 ntTSL 5 BASIC4.86□□□□□ -1.63
HOXA1P49639 AL136368.1-201ENST00000416249 401 ntTSL 2 BASIC4.86□□□□□ -1.63
HOXA1P49639 AL158013.1-202ENST00000419666 520 ntTSL 5 BASIC4.86□□□□□ -1.63
HOXA1P49639 AC073641.1-201ENST00000425192 429 ntTSL 3 BASIC4.86□□□□□ -1.63
HOXA1P49639 CYP1B1-AS1-202ENST00000427168 484 ntTSL 4 BASIC4.86□□□□□ -1.63
HOXA1P49639 PRH1-201ENST00000428168 603 ntAPPRIS ALT2 TSL 5 BASIC4.86□□□□□ -1.63
HOXA1P49639 AC108479.1-201ENST00000431142 427 ntBASIC4.86□□□□□ -1.63
HOXA1P49639 CD200R1-203ENST00000440122 847 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
HOXA1P49639 AC113331.2-201ENST00000445557 926 ntAPPRIS P1 BASIC4.86□□□□□ -1.63
HOXA1P49639 AL606517.1-201ENST00000446914 387 ntBASIC4.86□□□□□ -1.63
HOXA1P49639 AL157884.3-201ENST00000448273 1184 ntBASIC4.86□□□□□ -1.63
HOXA1P49639 MACROD2-IT1-201ENST00000448536 665 ntTSL 5 BASIC4.86□□□□□ -1.63
HOXA1P49639 MAGI2-AS3-210ENST00000448636 798 ntTSL 5 BASIC4.86□□□□□ -1.63
HOXA1P49639 LINC01376-204ENST00000449124 626 ntTSL 2 BASIC4.86□□□□□ -1.63
HOXA1P49639 AC002553.2-201ENST00000453217 340 ntBASIC4.86□□□□□ -1.63
HOXA1P49639 AL034369.1-201ENST00000453808 477 ntBASIC4.86□□□□□ -1.63
HOXA1P49639 AL133351.3-201ENST00000454998 193 ntBASIC4.86□□□□□ -1.63
HOXA1P49639 CREM-220ENST00000463314 964 ntTSL 2 BASIC4.86□□□□□ -1.63
HOXA1P49639 BBOF1-202ENST00000463558 550 ntAPPRIS ALT2 TSL 2 BASIC4.86□□□□□ -1.63
HOXA1P49639 MRPS22-205ENST00000478464 1065 ntTSL 5 BASIC4.86□□□□□ -1.63
HOXA1P49639 STRADBP1-201ENST00000478954 1281 ntBASIC4.86□□□□□ -1.63
HOXA1P49639 LINC02000-201ENST00000483245 640 ntTSL 2 BASIC4.86□□□□□ -1.63
HOXA1P49639 AC114324.2-202ENST00000503812 134 ntBASIC4.86□□□□□ -1.63
HOXA1P49639 AC021087.2-201ENST00000504656 1203 ntBASIC4.86□□□□□ -1.63
HOXA1P49639 AC027627.1-201ENST00000506895 753 ntTSL 3 BASIC4.86□□□□□ -1.63
HOXA1P49639 AC093325.1-201ENST00000508378 326 ntBASIC4.86□□□□□ -1.63
HOXA1P49639 LINC02466-202ENST00000509105 653 ntTSL 3 BASIC4.86□□□□□ -1.63
HOXA1P49639 AC006063.1-201ENST00000512511 560 ntTSL 4 BASIC4.86□□□□□ -1.63
HOXA1P49639 AK6-204ENST00000512561 587 ntTSL 5 BASIC4.86□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 77.1 ms