Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 RDM1-215ENST00000612980 501 ntTSL 1 (best) BASIC8.75□□□□□ -1.01
CUX1P39880 ABCA9-201ENST00000340001 6514 ntAPPRIS P1 TSL 1 (best) BASIC8.75□□□□□ -1.01
CUX1P39880 EFCAB3-201ENST00000305286 1542 ntAPPRIS P1 TSL 1 (best) BASIC8.74□□□□□ -1.01
CUX1P39880 FHL5-201ENST00000326771 2031 ntAPPRIS P1 TSL 1 (best) BASIC8.74□□□□□ -1.01
CUX1P39880 SMARCE1-208ENST00000474246 2124 ntTSL 1 (best) BASIC8.74□□□□□ -1.01
CUX1P39880 METTL21EP-202ENST00000605100 2312 ntTSL 2 BASIC8.74□□□□□ -1.01
CUX1P39880 OR52I2-203ENST00000641896 6591 ntAPPRIS ALT2 BASIC8.74□□□□□ -1.01
CUX1P39880 ZEB2-227ENST00000627532 9541 ntAPPRIS P2 TSL 1 (best) BASIC8.74□□□□□ -1.01
CUX1P39880 CPNE3-203ENST00000517490 4865 ntAPPRIS P1 TSL 1 (best) BASIC8.74□□□□□ -1.01
CUX1P39880 BDNF-217ENST00000533131 3878 ntAPPRIS P1 TSL 1 (best) BASIC8.74□□□□□ -1.01
CUX1P39880 DCP2-201ENST00000389063 8947 ntAPPRIS P1 TSL 1 (best) BASIC8.74□□□□□ -1.01
CUX1P39880 LINC02523-201ENST00000423208 2963 ntTSL 1 (best) BASIC8.74□□□□□ -1.01
CUX1P39880 PSD3-204ENST00000440756 11690 ntAPPRIS ALT2 TSL 5 BASIC8.74□□□□□ -1.01
CUX1P39880 NOSTRIN-202ENST00000397206 1446 ntTSL 1 (best) BASIC8.74□□□□□ -1.01
CUX1P39880 RBFOX2-205ENST00000405409 6932 ntTSL 1 (best) BASIC8.74□□□□□ -1.01
CUX1P39880 AC139713.2-209ENST00000509873 1303 ntTSL 1 (best) BASIC8.74□□□□□ -1.01
CUX1P39880 AC069213.2-201ENST00000420238 366 ntBASIC8.74□□□□□ -1.01
CUX1P39880 SPATA13-AS1-201ENST00000430733 433 ntTSL 3 BASIC8.74□□□□□ -1.01
CUX1P39880 C2orf80-206ENST00000451346 979 ntTSL 5 BASIC8.74□□□□□ -1.01
CUX1P39880 AC068707.1-201ENST00000451438 391 ntTSL 3 BASIC8.74□□□□□ -1.01
CUX1P39880 RN7SL354P-201ENST00000469282 294 ntBASIC8.74□□□□□ -1.01
CUX1P39880 NDUFA5P9-201ENST00000472609 340 ntBASIC8.74□□□□□ -1.01
CUX1P39880 GAPDHP56-201ENST00000506031 988 ntBASIC8.74□□□□□ -1.01
CUX1P39880 OR4A17P-201ENST00000526032 904 ntBASIC8.74□□□□□ -1.01
CUX1P39880 CASP1-206ENST00000526568 1061 ntTSL 1 (best) BASIC8.74□□□□□ -1.01
CUX1P39880 AC104002.2-201ENST00000553919 318 ntTSL 5 BASIC8.74□□□□□ -1.01
CUX1P39880 ZNRD1ASP-221ENST00000637794 1074 ntBASIC8.74□□□□□ -1.01
CUX1P39880 MCM10-201ENST00000378694 4587 ntTSL 5 BASIC8.74□□□□□ -1.01
CUX1P39880 AC005225.5-201ENST00000623547 2225 ntBASIC8.73□□□□□ -1.01
CUX1P39880 PATE4-201ENST00000457514 1983 ntAPPRIS P2 TSL 2 BASIC8.73□□□□□ -1.01
CUX1P39880 KIAA0232-202ENST00000425103 7771 ntAPPRIS P1 TSL 1 (best) BASIC8.73□□□□□ -1.01
CUX1P39880 BX284613.1-201ENST00000452221 1641 ntBASIC8.73□□□□□ -1.01
CUX1P39880 AC087258.1-203ENST00000545400 1629 ntTSL 2 BASIC8.73□□□□□ -1.01
CUX1P39880 CEACAM5-202ENST00000398599 2451 ntAPPRIS ALT2 TSL 5 BASIC8.73□□□□□ -1.01
CUX1P39880 REST-201ENST00000309042 7300 ntAPPRIS P1 TSL 1 (best) BASIC8.73□□□□□ -1.01
CUX1P39880 MOCS2-203ENST00000450852 1337 ntTSL 1 (best) BASIC8.73□□□□□ -1.01
CUX1P39880 CD109-201ENST00000287097 9130 ntAPPRIS P3 TSL 1 (best) BASIC8.73□□□□□ -1.01
CUX1P39880 OR11H6-201ENST00000315519 993 ntAPPRIS P1 BASIC8.73□□□□□ -1.01
CUX1P39880 OR4N5-201ENST00000333629 927 ntAPPRIS P1 BASIC8.73□□□□□ -1.01
CUX1P39880 TMLHE-202ENST00000369439 1248 ntTSL 1 (best) BASIC8.73□□□□□ -1.01
CUX1P39880 GLULP6-201ENST00000399502 913 ntBASIC8.73□□□□□ -1.01
CUX1P39880 HSPA8P15-201ENST00000401676 786 ntBASIC8.73□□□□□ -1.01
CUX1P39880 AL359633.2-201ENST00000415787 622 ntTSL 1 (best) BASIC8.73□□□□□ -1.01
CUX1P39880 OXSM-202ENST00000420173 1256 ntTSL 1 (best) BASIC8.73□□□□□ -1.01
CUX1P39880 AL021408.1-201ENST00000430428 552 ntTSL 4 BASIC8.73□□□□□ -1.01
CUX1P39880 STXBP5-AS1-204ENST00000431143 644 ntTSL 3 BASIC8.73□□□□□ -1.01
CUX1P39880 RN7SL385P-201ENST00000468873 276 ntBASIC8.73□□□□□ -1.01
CUX1P39880 STRADBP1-201ENST00000478954 1281 ntBASIC8.73□□□□□ -1.01
CUX1P39880 IGKV1-32-201ENST00000519290 311 ntBASIC8.73□□□□□ -1.01
CUX1P39880 AC022915.1-201ENST00000521660 289 ntTSL 3 BASIC8.73□□□□□ -1.01
CUX1P39880 AC005899.1-201ENST00000584125 563 ntTSL 5 BASIC8.73□□□□□ -1.01
CUX1P39880 AC006504.5-202ENST00000586784 656 ntTSL 2 BASIC8.73□□□□□ -1.01
CUX1P39880 Metazoa_SRP.55-201ENST00000618452 275 ntBASIC8.73□□□□□ -1.01
CUX1P39880 Metazoa_SRP.193-201ENST00000622007 277 ntBASIC8.73□□□□□ -1.01
CUX1P39880 ZNF436-201ENST00000314011 4071 ntAPPRIS P1 TSL 1 (best) BASIC8.73□□□□□ -1.01
CUX1P39880 SERPINB11-205ENST00000544088 1846 ntAPPRIS P1 TSL 2 BASIC8.73□□□□□ -1.01
CUX1P39880 ANK2-212ENST00000506722 8051 ntAPPRIS ALT2 TSL 1 (best) BASIC8.72□□□□□ -1.01
CUX1P39880 FAM184A-212ENST00000522284 2721 ntTSL 1 (best) BASIC8.72□□□□□ -1.01
CUX1P39880 MATR3-230ENST00000394800 5513 ntTSL 5 BASIC8.72□□□□□ -1.01
CUX1P39880 ZFAND6-213ENST00000559835 1446 ntAPPRIS P1 TSL 1 (best) BASIC8.72□□□□□ -1.01
CUX1P39880 NBPF20-205ENST00000622803 3689 ntTSL 5 BASIC8.72□□□□□ -1.01
CUX1P39880 EEF1A1P36-201ENST00000427807 1351 ntBASIC8.72□□□□□ -1.01
CUX1P39880 CLVS1-203ENST00000518592 2880 ntTSL 1 (best) BASIC8.72□□□□□ -1.01
CUX1P39880 RNA5SP191-201ENST00000362585 102 ntBASIC8.72□□□□□ -1.01
CUX1P39880 AC124944.2-201ENST00000429866 1242 ntBASIC8.72□□□□□ -1.01
CUX1P39880 AL359265.2-201ENST00000434367 631 ntBASIC8.72□□□□□ -1.01
CUX1P39880 REG1CP-206ENST00000447469 496 ntBASIC8.72□□□□□ -1.01
CUX1P39880 RN7SL814P-201ENST00000487715 300 ntBASIC8.72□□□□□ -1.01
CUX1P39880 AC011453.2-201ENST00000603737 729 ntBASIC8.72□□□□□ -1.01
CUX1P39880 Metazoa_SRP.93-201ENST00000622525 276 ntBASIC8.72□□□□□ -1.01
CUX1P39880 POT1-AS1-205ENST00000453342 3252 ntTSL 1 (best) BASIC8.72□□□□□ -1.01
CUX1P39880 KLHL13-203ENST00000371878 3234 ntTSL 2 BASIC8.72□□□□□ -1.01
CUX1P39880 SLC12A6-201ENST00000290209 7286 ntAPPRIS P3 TSL 1 (best) BASIC8.72□□□□□ -1.01
CUX1P39880 ATM-201ENST00000278616 13147 ntAPPRIS P1 TSL 5 BASIC8.72□□□□□ -1.01
CUX1P39880 MCM9-209ENST00000619706 4822 ntAPPRIS P1 TSL 5 BASIC8.72□□□□□ -1.01
CUX1P39880 EEF1A1-210ENST00000610520 3447 ntTSL 5 BASIC8.72□□□□□ -1.01
CUX1P39880 CASP1-208ENST00000527979 1521 ntTSL 5 BASIC8.72□□□□□ -1.01
CUX1P39880 USP8-204ENST00000425032 3559 ntTSL 2 BASIC8.72□□□□□ -1.01
CUX1P39880 BPIFC-204ENST00000534972 1809 ntTSL 5 BASIC8.71□□□□□ -1.01
CUX1P39880 DDX6-208ENST00000620157 6152 ntAPPRIS P1 TSL 1 (best) BASIC8.71□□□□□ -1.01
CUX1P39880 TTN-AS1-203ENST00000419746 4592 ntTSL 1 (best) BASIC8.71□□□□□ -1.01
CUX1P39880 BBIP1-207ENST00000448814 2119 ntTSL 1 (best) BASIC8.71□□□□□ -1.01
CUX1P39880 AC003973.3-201ENST00000624863 2822 ntBASIC8.71□□□□□ -1.01
CUX1P39880 SRGAP1-206ENST00000543397 5652 ntTSL 1 (best) BASIC8.71□□□□□ -1.01
CUX1P39880 DNAJC12-201ENST00000225171 1201 ntAPPRIS P1 TSL 1 (best) BASIC8.71□□□□□ -1.01
CUX1P39880 HMGB3P7-201ENST00000400214 611 ntBASIC8.71□□□□□ -1.01
CUX1P39880 RPL18P10-201ENST00000425606 538 ntBASIC8.71□□□□□ -1.01
CUX1P39880 AL354714.3-201ENST00000447284 493 ntBASIC8.71□□□□□ -1.01
CUX1P39880 PTCHD1-AS-201ENST00000455399 718 ntTSL 3 BASIC8.71□□□□□ -1.01
CUX1P39880 RPL7P40-201ENST00000481703 745 ntBASIC8.71□□□□□ -1.01
CUX1P39880 MSMO1-203ENST00000504317 1026 ntTSL 1 (best) BASIC8.71□□□□□ -1.01
CUX1P39880 AC084048.1-201ENST00000505494 640 ntTSL 3 BASIC8.71□□□□□ -1.01
CUX1P39880 AC097173.1-201ENST00000505862 819 ntBASIC8.71□□□□□ -1.01
CUX1P39880 LINC02231-201ENST00000510459 447 ntTSL 3 BASIC8.71□□□□□ -1.01
CUX1P39880 AC073429.1-201ENST00000511749 503 ntTSL 3 BASIC8.71□□□□□ -1.01
CUX1P39880 TAS2R46-201ENST00000533467 930 ntAPPRIS P1 BASIC8.71□□□□□ -1.01
CUX1P39880 ATP5J2P6-201ENST00000565203 266 ntBASIC8.71□□□□□ -1.01
CUX1P39880 PCBP1-AS1-278ENST00000625518 864 ntTSL 5 BASIC8.71□□□□□ -1.01
CUX1P39880 AC099654.6-201ENST00000636487 512 ntBASIC8.71□□□□□ -1.01
CUX1P39880 PPP1R1C-201ENST00000280295 1636 ntTSL 1 (best) BASIC8.71□□□□□ -1.01
Retrieved 100 of 98,524 protein–RNA pairs in 82.7 ms