Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 AC010245.2-201ENST00000606908 1167 ntBASIC5.36□□□□□ -1.55
SHMT2P34897 AC010632.3-201ENST00000611377 369 ntBASIC5.36□□□□□ -1.55
SHMT2P34897 AJ009632.2-203ENST00000634708 1205 ntTSL 5 BASIC5.36□□□□□ -1.55
SHMT2P34897 LGALS8-222ENST00000527974 1349 ntAPPRIS P4 TSL 5 BASIC5.36□□□□□ -1.55
SHMT2P34897 USP8-201ENST00000307179 4243 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
SHMT2P34897 PLCXD3-201ENST00000328457 7538 ntAPPRIS P1 TSL 5 BASIC5.36□□□□□ -1.55
SHMT2P34897 MTCO1P7-201ENST00000419523 1542 ntBASIC5.36□□□□□ -1.55
SHMT2P34897 MTX3-204ENST00000617335 6155 ntTSL 2 BASIC5.36□□□□□ -1.55
SHMT2P34897 METTL15-201ENST00000303459 4068 ntTSL 2 BASIC5.36□□□□□ -1.55
SHMT2P34897 AC144833.1-201ENST00000567953 4089 ntBASIC5.36□□□□□ -1.55
SHMT2P34897 NOX4-205ENST00000424319 4184 ntTSL 5 BASIC5.36□□□□□ -1.55
SHMT2P34897 DST-205ENST00000370765 8999 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
SHMT2P34897 AC103740.1-201ENST00000558888 7427 ntTSL 2 BASIC5.35□□□□□ -1.55
SHMT2P34897 IKZF2-207ENST00000434687 3888 ntAPPRIS P2 TSL 5 BASIC5.35□□□□□ -1.55
SHMT2P34897 LMO3-209ENST00000447609 3365 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
SHMT2P34897 ITCH-201ENST00000262650 3089 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
SHMT2P34897 FAM170B-AS1-203ENST00000442525 2000 ntTSL 2 BASIC5.35□□□□□ -1.55
SHMT2P34897 ICE2P1-201ENST00000512800 1849 ntBASIC5.35□□□□□ -1.55
SHMT2P34897 SEC31A-204ENST00000355196 4104 ntAPPRIS P4 TSL 2 BASIC5.35□□□□□ -1.55
SHMT2P34897 PRLR-203ENST00000348262 1339 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
SHMT2P34897 CRYAB-201ENST00000227251 848 ntAPPRIS P1 TSL 5 BASIC5.35□□□□□ -1.55
SHMT2P34897 MYRFL-201ENST00000299350 820 ntTSL 5 BASIC5.35□□□□□ -1.55
SHMT2P34897 MIR323B-201ENST00000385269 82 ntBASIC5.35□□□□□ -1.55
SHMT2P34897 AL136231.1-201ENST00000429407 730 ntBASIC5.35□□□□□ -1.55
SHMT2P34897 AL359265.1-201ENST00000440296 795 ntBASIC5.35□□□□□ -1.55
SHMT2P34897 SPRYD7P1-201ENST00000443861 570 ntBASIC5.35□□□□□ -1.55
SHMT2P34897 AP000470.1-201ENST00000448063 693 ntTSL 5 BASIC5.35□□□□□ -1.55
SHMT2P34897 EPDR1-204ENST00000476620 555 ntTSL 4 BASIC5.35□□□□□ -1.55
SHMT2P34897 RPS26P24-201ENST00000497656 331 ntBASIC5.35□□□□□ -1.55
SHMT2P34897 AC090638.1-201ENST00000498296 909 ntBASIC5.35□□□□□ -1.55
SHMT2P34897 PTPN20-212ENST00000502254 599 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
SHMT2P34897 AC012629.1-201ENST00000503953 342 ntTSL 3 BASIC5.35□□□□□ -1.55
SHMT2P34897 LINC02505-202ENST00000510597 776 ntTSL 3 BASIC5.35□□□□□ -1.55
SHMT2P34897 RNA5SP230-201ENST00000517039 122 ntBASIC5.35□□□□□ -1.55
SHMT2P34897 AC138832.1-201ENST00000522871 556 ntBASIC5.35□□□□□ -1.55
SHMT2P34897 AC090692.1-202ENST00000525363 607 ntTSL 4 BASIC5.35□□□□□ -1.55
SHMT2P34897 AC103855.1-201ENST00000525926 564 ntTSL 2 BASIC5.35□□□□□ -1.55
SHMT2P34897 AP005242.1-201ENST00000583946 467 ntTSL 3 BASIC5.35□□□□□ -1.55
SHMT2P34897 AC024563.1-201ENST00000601860 618 ntTSL 2 BASIC5.35□□□□□ -1.55
SHMT2P34897 AL356580.1-201ENST00000604129 159 ntTSL 5 BASIC5.35□□□□□ -1.55
SHMT2P34897 SLC8A1-AS1-218ENST00000610721 956 ntTSL 5 BASIC5.35□□□□□ -1.55
SHMT2P34897 AC079395.2-201ENST00000610982 737 ntBASIC5.35□□□□□ -1.55
SHMT2P34897 MIR6729-201ENST00000618194 65 ntBASIC5.35□□□□□ -1.55
SHMT2P34897 AC021766.1-201ENST00000624404 741 ntBASIC5.35□□□□□ -1.55
SHMT2P34897 IKZF2-201ENST00000342002 3747 ntAPPRIS ALT2 TSL 1 (best) BASIC5.35□□□□□ -1.55
SHMT2P34897 EDA2R-203ENST00000396050 3429 ntAPPRIS ALT2 TSL 5 BASIC5.35□□□□□ -1.55
SHMT2P34897 NAV2-AS5-201ENST00000528726 3307 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
SHMT2P34897 IPCEF1-203ENST00000422970 3267 ntAPPRIS ALT2 TSL 1 (best) BASIC5.35□□□□□ -1.55
SHMT2P34897 IGF1-202ENST00000337514 7359 ntAPPRIS P3 TSL 1 (best) BASIC5.35□□□□□ -1.55
SHMT2P34897 DLGAP5-202ENST00000395425 2954 ntAPPRIS ALT2 TSL 1 (best) BASIC5.35□□□□□ -1.55
SHMT2P34897 GHR-211ENST00000618088 4491 ntAPPRIS P1 TSL 5 BASIC5.35□□□□□ -1.55
SHMT2P34897 ZNF33A-202ENST00000374618 6122 ntTSL 4 BASIC5.35□□□□□ -1.55
SHMT2P34897 ELAVL4-205ENST00000371824 3966 ntAPPRIS P5 TSL 1 (best) BASIC5.35□□□□□ -1.55
SHMT2P34897 ZNF571-203ENST00000451802 2265 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
SHMT2P34897 NRDE2-201ENST00000354366 14208 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
SHMT2P34897 LINC01619-207ENST00000551843 2205 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
SHMT2P34897 NCOA3-203ENST00000372004 7939 ntAPPRIS ALT2 TSL 1 (best) BASIC5.35□□□□□ -1.55
SHMT2P34897 LINC00598-206ENST00000615947 3541 ntTSL 4 BASIC5.35□□□□□ -1.55
SHMT2P34897 ERP27-201ENST00000266397 2096 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
SHMT2P34897 AC006484.1-201ENST00000435086 1884 ntBASIC5.34□□□□□ -1.55
SHMT2P34897 NCOA7-202ENST00000368357 5521 ntAPPRIS P3 TSL 1 (best) BASIC5.34□□□□□ -1.55
SHMT2P34897 LIX1-AS1-201ENST00000504578 1793 ntTSL 5 BASIC5.34□□□□□ -1.55
SHMT2P34897 AL359538.1-201ENST00000453498 1710 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
SHMT2P34897 RALGAPA1P1-201ENST00000443361 6232 ntBASIC5.34□□□□□ -1.55
SHMT2P34897 CRYZ-204ENST00000370872 1592 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
SHMT2P34897 ZNF343-207ENST00000612935 3675 ntAPPRIS ALT2 TSL 5 BASIC5.34□□□□□ -1.55
SHMT2P34897 MAP3K7-203ENST00000369327 4558 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
SHMT2P34897 ZNF418-205ENST00000595830 3543 ntAPPRIS P3 TSL 1 (best) BASIC5.34□□□□□ -1.55
SHMT2P34897 FASTKD3-201ENST00000264669 2402 ntAPPRIS P1 TSL 2 BASIC5.34□□□□□ -1.55
SHMT2P34897 NAT1-208ENST00000520546 1446 ntAPPRIS P1 BASIC5.34□□□□□ -1.55
SHMT2P34897 RN7SKP160-201ENST00000363804 340 ntBASIC5.34□□□□□ -1.55
SHMT2P34897 RNA5SP234-201ENST00000363916 119 ntBASIC5.34□□□□□ -1.55
SHMT2P34897 USMG5-203ENST00000369811 635 ntAPPRIS P1 TSL 2 BASIC5.34□□□□□ -1.55
SHMT2P34897 ZSCAN12P1-201ENST00000406489 419 ntBASIC5.34□□□□□ -1.55
SHMT2P34897 AC079355.1-201ENST00000421770 223 ntBASIC5.34□□□□□ -1.55
SHMT2P34897 AC018832.1-201ENST00000428171 566 ntTSL 4 BASIC5.34□□□□□ -1.55
SHMT2P34897 RPL7P56-201ENST00000429441 717 ntBASIC5.34□□□□□ -1.55
SHMT2P34897 AL136455.1-201ENST00000441083 1240 ntBASIC5.34□□□□□ -1.55
SHMT2P34897 LINC02210-201ENST00000444561 288 ntBASIC5.34□□□□□ -1.55
SHMT2P34897 AL161722.1-201ENST00000446972 1032 ntBASIC5.34□□□□□ -1.55
SHMT2P34897 LINC01496-201ENST00000448761 460 ntTSL 5 BASIC5.34□□□□□ -1.55
SHMT2P34897 AL590652.1-201ENST00000453790 850 ntTSL 3 BASIC5.34□□□□□ -1.55
SHMT2P34897 OR2AF1P-201ENST00000454899 889 ntBASIC5.34□□□□□ -1.55
SHMT2P34897 RANP1-206ENST00000455094 651 ntBASIC5.34□□□□□ -1.55
SHMT2P34897 AC007386.1-201ENST00000455212 582 ntBASIC5.34□□□□□ -1.55
SHMT2P34897 AP006216.2-201ENST00000457746 333 ntTSL 5 BASIC5.34□□□□□ -1.55
SHMT2P34897 RPL35AP19-201ENST00000469425 329 ntBASIC5.34□□□□□ -1.55
SHMT2P34897 AC108693.1-201ENST00000496068 432 ntBASIC5.34□□□□□ -1.55
SHMT2P34897 ERVH-1-201ENST00000507666 639 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
SHMT2P34897 SEMA6A-AS1-202ENST00000508424 862 ntTSL 3 BASIC5.34□□□□□ -1.55
SHMT2P34897 RNU4ATAC18P-201ENST00000516179 126 ntBASIC5.34□□□□□ -1.55
SHMT2P34897 AC021733.2-201ENST00000518830 497 ntBASIC5.34□□□□□ -1.55
SHMT2P34897 AC007225.2-201ENST00000562529 256 ntBASIC5.34□□□□□ -1.55
SHMT2P34897 AC079414.1-201ENST00000563114 488 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
SHMT2P34897 RN7SL753P-201ENST00000581238 290 ntBASIC5.34□□□□□ -1.55
SHMT2P34897 GMFG-212ENST00000602185 423 ntTSL 3 BASIC5.34□□□□□ -1.55
SHMT2P34897 Metazoa_SRP.207-201ENST00000612254 285 ntBASIC5.34□□□□□ -1.55
SHMT2P34897 MILR1-204ENST00000616498 747 ntAPPRIS ALT2 TSL 1 (best) BASIC5.34□□□□□ -1.55
SHMT2P34897 AC099329.2-203ENST00000471537 3605 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
SHMT2P34897 ZNF24-202ENST00000399061 6282 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 84.7 ms