Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 AC090912.3-201ENST00000609775 533 ntBASIC6.66□□□□□ -1.34
SMARCA1P28370 AP000904.1-201ENST00000609911 951 ntTSL 3 BASIC6.66□□□□□ -1.34
SMARCA1P28370 AL050303.3-201ENST00000613704 284 ntBASIC6.66□□□□□ -1.34
SMARCA1P28370 AC127024.6-201ENST00000621598 424 ntBASIC6.66□□□□□ -1.34
SMARCA1P28370 Metazoa_SRP.130-201ENST00000622625 267 ntBASIC6.66□□□□□ -1.34
SMARCA1P28370 AP003485.1-201ENST00000625093 753 ntBASIC6.66□□□□□ -1.34
SMARCA1P28370 BMPR2-204ENST00000638587 3443 ntTSL 5 BASIC6.66□□□□□ -1.34
SMARCA1P28370 AC020633.1-201ENST00000468439 2247 ntBASIC6.66□□□□□ -1.34
SMARCA1P28370 OR7C1-204ENST00000642000 11290 ntAPPRIS P1 BASIC6.66□□□□□ -1.34
SMARCA1P28370 SLC26A5-207ENST00000393729 2422 ntTSL 5 BASIC6.66□□□□□ -1.34
SMARCA1P28370 SGO1-202ENST00000306698 1531 ntTSL 1 (best) BASIC6.66□□□□□ -1.34
SMARCA1P28370 ALKBH8-205ENST00000428149 4079 ntAPPRIS P3 TSL 1 (best) BASIC6.66□□□□□ -1.34
SMARCA1P28370 AFM-201ENST00000226355 2059 ntAPPRIS P1 TSL 1 (best) BASIC6.65□□□□□ -1.34
SMARCA1P28370 NSD1-201ENST00000347982 7688 ntTSL 1 (best) BASIC6.65□□□□□ -1.34
SMARCA1P28370 VCAN-203ENST00000343200 9455 ntTSL 1 (best) BASIC6.65□□□□□ -1.34
SMARCA1P28370 CEACAMP10-201ENST00000489959 1721 ntTSL 2 BASIC6.65□□□□□ -1.34
SMARCA1P28370 NUF2-202ENST00000367900 1842 ntAPPRIS P1 TSL 1 (best) BASIC6.65□□□□□ -1.34
SMARCA1P28370 GABRA1-218ENST00000637827 1838 ntAPPRIS P1 TSL 5 BASIC6.65□□□□□ -1.34
SMARCA1P28370 SCN2A-202ENST00000375427 8553 ntAPPRIS ALT1 TSL 5 BASIC6.65□□□□□ -1.34
SMARCA1P28370 RUFY3-202ENST00000381006 3098 ntAPPRIS P1 TSL 5 BASIC6.65□□□□□ -1.34
SMARCA1P28370 AL161912.4-201ENST00000623889 2468 ntBASIC6.65□□□□□ -1.34
SMARCA1P28370 PTPRD-214ENST00000540109 6210 ntAPPRIS P1 TSL 5 BASIC6.65□□□□□ -1.34
SMARCA1P28370 ZNF300P1-202ENST00000520773 3115 ntTSL 5 BASIC6.65□□□□□ -1.34
SMARCA1P28370 RALGAPA1-202ENST00000382366 6328 ntTSL 1 (best) BASIC6.65□□□□□ -1.34
SMARCA1P28370 SNORA64.1-201ENST00000362600 132 ntBASIC6.65□□□□□ -1.34
SMARCA1P28370 RNA5SP510-201ENST00000364697 99 ntBASIC6.65□□□□□ -1.34
SMARCA1P28370 RPL11P3-201ENST00000395256 523 ntBASIC6.65□□□□□ -1.34
SMARCA1P28370 MTATP6P31-201ENST00000406985 692 ntBASIC6.65□□□□□ -1.34
SMARCA1P28370 AC069282.1-201ENST00000411911 526 ntBASIC6.65□□□□□ -1.34
SMARCA1P28370 AC007389.1-203ENST00000414811 556 ntTSL 4 BASIC6.65□□□□□ -1.34
SMARCA1P28370 RNF10P1-201ENST00000418589 369 ntBASIC6.65□□□□□ -1.34
SMARCA1P28370 NENFP1-201ENST00000419476 466 ntBASIC6.65□□□□□ -1.34
SMARCA1P28370 RNGTTP1-201ENST00000420965 728 ntBASIC6.65□□□□□ -1.34
SMARCA1P28370 MTCO2P1-201ENST00000424648 477 ntBASIC6.65□□□□□ -1.34
SMARCA1P28370 AC092168.2-201ENST00000430586 717 ntTSL 3 BASIC6.65□□□□□ -1.34
SMARCA1P28370 AL353751.1-203ENST00000437032 603 ntTSL 3 BASIC6.65□□□□□ -1.34
SMARCA1P28370 ARL5AP3-201ENST00000439327 386 ntBASIC6.65□□□□□ -1.34
SMARCA1P28370 AL513321.1-201ENST00000441175 761 ntBASIC6.65□□□□□ -1.34
SMARCA1P28370 RPL31P15-201ENST00000449770 338 ntBASIC6.65□□□□□ -1.34
SMARCA1P28370 CLIC4P1-201ENST00000453177 535 ntBASIC6.65□□□□□ -1.34
SMARCA1P28370 NXT1P1-201ENST00000458481 316 ntBASIC6.65□□□□□ -1.34
SMARCA1P28370 IQCJ-SCHIP1-AS1-201ENST00000460574 508 ntTSL 3 BASIC6.65□□□□□ -1.34
SMARCA1P28370 CABYRP1-201ENST00000465493 1045 ntBASIC6.65□□□□□ -1.34
SMARCA1P28370 CFHR2-203ENST00000476712 1020 ntAPPRIS ALT2 TSL 3 BASIC6.65□□□□□ -1.34
SMARCA1P28370 RN7SL273P-201ENST00000481561 299 ntBASIC6.65□□□□□ -1.34
SMARCA1P28370 PHC3-208ENST00000481639 1075 ntTSL 1 (best) BASIC6.65□□□□□ -1.34
SMARCA1P28370 PPIAP19-201ENST00000486414 492 ntBASIC6.65□□□□□ -1.34
SMARCA1P28370 AC108729.1-201ENST00000487812 947 ntBASIC6.65□□□□□ -1.34
SMARCA1P28370 AC008448.1-201ENST00000505109 584 ntTSL 5 BASIC6.65□□□□□ -1.34
SMARCA1P28370 UGT2A3P7-201ENST00000510485 734 ntBASIC6.65□□□□□ -1.34
SMARCA1P28370 SNORA76.2-201ENST00000517095 137 ntBASIC6.65□□□□□ -1.34
SMARCA1P28370 TMEM97P2-201ENST00000517841 403 ntBASIC6.65□□□□□ -1.34
SMARCA1P28370 AC008575.1-201ENST00000520401 694 ntAPPRIS P1 TSL 3 BASIC6.65□□□□□ -1.34
SMARCA1P28370 AC113423.1-201ENST00000523279 289 ntTSL 3 BASIC6.65□□□□□ -1.34
SMARCA1P28370 ZFAND6-208ENST00000558688 780 ntTSL 2 BASIC6.65□□□□□ -1.34
SMARCA1P28370 AC010547.6-201ENST00000571789 193 ntBASIC6.65□□□□□ -1.34
SMARCA1P28370 RPL26-204ENST00000578812 1002 ntTSL 2 BASIC6.65□□□□□ -1.34
SMARCA1P28370 AC002398.1-201ENST00000589397 427 ntTSL 5 BASIC6.65□□□□□ -1.34
SMARCA1P28370 AC015802.2-201ENST00000589690 189 ntBASIC6.65□□□□□ -1.34
SMARCA1P28370 SETSIP-202ENST00000596516 909 ntAPPRIS P2 BASIC6.65□□□□□ -1.34
SMARCA1P28370 AL513327.3-201ENST00000602618 469 ntBASIC6.65□□□□□ -1.34
SMARCA1P28370 MTATP6P2-201ENST00000603319 678 ntBASIC6.65□□□□□ -1.34
SMARCA1P28370 AC135983.2-201ENST00000604301 628 ntTSL 5 BASIC6.65□□□□□ -1.34
SMARCA1P28370 AL158050.2-201ENST00000605336 568 ntBASIC6.65□□□□□ -1.34
SMARCA1P28370 AC018754.1-201ENST00000607486 925 ntBASIC6.65□□□□□ -1.34
SMARCA1P28370 C8orf59-210ENST00000614462 734 ntTSL 1 (best) BASIC6.65□□□□□ -1.34
SMARCA1P28370 Metazoa_SRP.43-201ENST00000616394 271 ntBASIC6.65□□□□□ -1.34
SMARCA1P28370 AL356118.1-201ENST00000635272 1078 ntBASIC6.65□□□□□ -1.34
SMARCA1P28370 AP001153.1-201ENST00000641024 338 ntBASIC6.65□□□□□ -1.34
SMARCA1P28370 DMD-228ENST00000541735 7080 ntTSL 5 BASIC6.65□□□□□ -1.34
SMARCA1P28370 MAP3K7-201ENST00000369320 3328 ntTSL 5 BASIC6.65□□□□□ -1.35
SMARCA1P28370 UGT2B15-201ENST00000338206 2077 ntAPPRIS P1 TSL 1 (best) BASIC6.65□□□□□ -1.35
SMARCA1P28370 HNF4G-203ENST00000396423 4209 ntAPPRIS P3 TSL 1 (best) BASIC6.65□□□□□ -1.35
SMARCA1P28370 AL592429.1-201ENST00000403909 1473 ntBASIC6.65□□□□□ -1.35
SMARCA1P28370 TTC39C-201ENST00000304621 2304 ntAPPRIS P3 TSL 1 (best) BASIC6.65□□□□□ -1.35
SMARCA1P28370 TDRD5-202ENST00000367614 3632 ntAPPRIS P3 TSL 2 BASIC6.64□□□□□ -1.35
SMARCA1P28370 C16orf87-202ENST00000394806 6640 ntTSL 1 (best) BASIC6.64□□□□□ -1.35
SMARCA1P28370 DSC2-201ENST00000251081 4826 ntTSL 1 (best) BASIC6.64□□□□□ -1.35
SMARCA1P28370 UTP15-208ENST00000543251 4922 ntTSL 2 BASIC6.64□□□□□ -1.35
SMARCA1P28370 PROM1-201ENST00000447510 3977 ntAPPRIS P3 TSL 1 (best) BASIC6.64□□□□□ -1.35
SMARCA1P28370 ADAM29-202ENST00000404450 3171 ntAPPRIS P1 TSL 1 (best) BASIC6.64□□□□□ -1.35
SMARCA1P28370 ZNF160-203ENST00000429604 4336 ntAPPRIS P1 TSL 3 BASIC6.64□□□□□ -1.35
SMARCA1P28370 SSX5-202ENST00000347757 1261 ntAPPRIS ALT2 TSL 5 BASIC6.64□□□□□ -1.35
SMARCA1P28370 CLEC4A-203ENST00000352620 615 ntTSL 1 (best) BASIC6.64□□□□□ -1.35
SMARCA1P28370 CLEC4A-204ENST00000360500 597 ntTSL 5 BASIC6.64□□□□□ -1.35
SMARCA1P28370 SSX5-203ENST00000376923 1208 ntAPPRIS ALT2 TSL 5 BASIC6.64□□□□□ -1.35
SMARCA1P28370 RNA5SP91-201ENST00000390902 119 ntBASIC6.64□□□□□ -1.35
SMARCA1P28370 KRTAP29-1-201ENST00000391353 1026 ntAPPRIS P1 BASIC6.64□□□□□ -1.35
SMARCA1P28370 HMGB1P20-201ENST00000402555 677 ntBASIC6.64□□□□□ -1.35
SMARCA1P28370 BTBD9-203ENST00000403056 1155 ntTSL 5 BASIC6.64□□□□□ -1.35
SMARCA1P28370 LINC01945-201ENST00000419784 840 ntTSL 2 BASIC6.64□□□□□ -1.35
SMARCA1P28370 AL034379.1-201ENST00000423216 253 ntBASIC6.64□□□□□ -1.35
SMARCA1P28370 MTCO1P51-201ENST00000427672 1060 ntBASIC6.64□□□□□ -1.35
SMARCA1P28370 SUMO2P3-201ENST00000438311 288 ntBASIC6.64□□□□□ -1.35
SMARCA1P28370 FMR1-IT1-201ENST00000441414 343 ntTSL 5 BASIC6.64□□□□□ -1.35
SMARCA1P28370 AC087501.1-201ENST00000445617 715 ntTSL 5 BASIC6.64□□□□□ -1.35
SMARCA1P28370 AC025947.1-201ENST00000447943 299 ntTSL 5 BASIC6.64□□□□□ -1.35
SMARCA1P28370 AL358876.1-201ENST00000453364 1075 ntBASIC6.64□□□□□ -1.35
SMARCA1P28370 RPS23P2-201ENST00000463671 415 ntBASIC6.64□□□□□ -1.35
SMARCA1P28370 SPRR2F-201ENST00000468739 681 ntAPPRIS P1 TSL 3 BASIC6.64□□□□□ -1.35
Retrieved 100 of 98,524 protein–RNA pairs in 70.6 ms