Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 STAG1-202ENST00000383202 6055 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
COL5A1P20908 OR2T7-202ENST00000641557 3409 ntAPPRIS P1 BASIC5.17□□□□□ -1.58
COL5A1P20908 KIF2A-203ENST00000407818 2315 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
COL5A1P20908 SORCS1-210ENST00000622431 6701 ntTSL 5 BASIC5.16□□□□□ -1.58
COL5A1P20908 PAK3-201ENST00000262836 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC5.16□□□□□ -1.58
COL5A1P20908 PAK3-205ENST00000417227 2196 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
COL5A1P20908 SPEF2-202ENST00000356031 5681 ntAPPRIS P2 TSL 1 (best) BASIC5.16□□□□□ -1.58
COL5A1P20908 KYAT3-203ENST00000370491 1868 ntAPPRIS ALT1 TSL 2 BASIC5.16□□□□□ -1.58
COL5A1P20908 CAPRIN2-202ENST00000395805 4156 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
COL5A1P20908 RNU1-32P-201ENST00000363937 159 ntBASIC5.16□□□□□ -1.58
COL5A1P20908 RNA5SP505-201ENST00000364748 108 ntBASIC5.16□□□□□ -1.58
COL5A1P20908 AL133482.1-201ENST00000415988 498 ntBASIC5.16□□□□□ -1.58
COL5A1P20908 CYP4F29P-201ENST00000420685 446 ntBASIC5.16□□□□□ -1.58
COL5A1P20908 CRIP1P1-201ENST00000427567 185 ntBASIC5.16□□□□□ -1.58
COL5A1P20908 KNOP1P3-201ENST00000446933 426 ntBASIC5.16□□□□□ -1.58
COL5A1P20908 AC068489.1-201ENST00000453706 261 ntTSL 5 BASIC5.16□□□□□ -1.58
COL5A1P20908 AC004052.1-201ENST00000514327 567 ntTSL 4 BASIC5.16□□□□□ -1.58
COL5A1P20908 AP002765.2-201ENST00000532961 666 ntTSL 3 BASIC5.16□□□□□ -1.58
COL5A1P20908 AC007406.1-201ENST00000544067 315 ntTSL 3 BASIC5.16□□□□□ -1.58
COL5A1P20908 MRPS21P9-201ENST00000571150 257 ntBASIC5.16□□□□□ -1.58
COL5A1P20908 AC068790.4-201ENST00000602474 263 ntBASIC5.16□□□□□ -1.58
COL5A1P20908 AL023583.1-201ENST00000607518 1143 ntBASIC5.16□□□□□ -1.58
COL5A1P20908 AL356752.1-201ENST00000615844 593 ntBASIC5.16□□□□□ -1.58
COL5A1P20908 AC099494.2-201ENST00000623371 978 ntBASIC5.16□□□□□ -1.58
COL5A1P20908 AC079298.3-201ENST00000624941 977 ntTSL 3 BASIC5.16□□□□□ -1.58
COL5A1P20908 LINC00254-202ENST00000633813 439 ntTSL 3 BASIC5.16□□□□□ -1.58
COL5A1P20908 AC097495.1-201ENST00000637675 546 ntAPPRIS P1 TSL 5 BASIC5.16□□□□□ -1.58
COL5A1P20908 RWDD2A-201ENST00000369724 3744 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
COL5A1P20908 NBPF19-201ENST00000369227 3670 ntTSL 5 BASIC5.16□□□□□ -1.58
COL5A1P20908 NBPF20-203ENST00000594479 3670 ntTSL 5 BASIC5.16□□□□□ -1.58
COL5A1P20908 NBPF14-210ENST00000621066 3670 ntTSL 5 BASIC5.16□□□□□ -1.58
COL5A1P20908 FBXO3-213ENST00000534136 3217 ntTSL 5 BASIC5.16□□□□□ -1.58
COL5A1P20908 ESRRG-219ENST00000487276 3015 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
COL5A1P20908 AC011933.2-201ENST00000578539 2790 ntBASIC5.16□□□□□ -1.58
COL5A1P20908 SLCO1C1-209ENST00000545604 2557 ntTSL 2 BASIC5.16□□□□□ -1.58
COL5A1P20908 PYHIN1-203ENST00000368140 2083 ntAPPRIS P4 TSL 1 (best) BASIC5.16□□□□□ -1.58
COL5A1P20908 LINC00630-201ENST00000416381 2012 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
COL5A1P20908 PREPL-216ENST00000541738 6049 ntTSL 2 BASIC5.16□□□□□ -1.58
COL5A1P20908 CTBS-202ENST00000370630 6600 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
COL5A1P20908 NRCAM-210ENST00000425651 3915 ntAPPRIS ALT2 TSL 1 (best) BASIC5.16□□□□□ -1.58
COL5A1P20908 LINS1-214ENST00000561308 1612 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
COL5A1P20908 AC245100.4-204ENST00000635587 1555 ntTSL 5 BASIC5.16□□□□□ -1.58
COL5A1P20908 NXF4-202ENST00000416098 1465 ntBASIC5.16□□□□□ -1.58
COL5A1P20908 SPINK14-201ENST00000356972 294 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
COL5A1P20908 RN7SKP185-201ENST00000362813 326 ntBASIC5.16□□□□□ -1.58
COL5A1P20908 AC068538.1-201ENST00000376856 336 ntBASIC5.16□□□□□ -1.58
COL5A1P20908 MIR105-1-201ENST00000385222 81 ntBASIC5.16□□□□□ -1.58
COL5A1P20908 RPS16P5-201ENST00000406501 404 ntBASIC5.16□□□□□ -1.58
COL5A1P20908 OR2A25-201ENST00000408898 1014 ntAPPRIS P1 BASIC5.16□□□□□ -1.58
COL5A1P20908 TEX41-205ENST00000431734 529 ntTSL 4 BASIC5.16□□□□□ -1.58
COL5A1P20908 GUSBP6-201ENST00000434932 640 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
COL5A1P20908 AC092754.1-201ENST00000472975 479 ntBASIC5.16□□□□□ -1.58
COL5A1P20908 AC025437.5-201ENST00000522769 314 ntTSL 3 BASIC5.16□□□□□ -1.58
COL5A1P20908 YWHABP2-201ENST00000540201 713 ntBASIC5.16□□□□□ -1.58
COL5A1P20908 MGAT4C-206ENST00000552435 550 ntTSL 4 BASIC5.16□□□□□ -1.58
COL5A1P20908 EDDM3DP-201ENST00000554692 434 ntBASIC5.16□□□□□ -1.58
COL5A1P20908 SPINK14-202ENST00000562793 157 ntTSL 5 BASIC5.16□□□□□ -1.58
COL5A1P20908 AC009117.1-201ENST00000563948 554 ntBASIC5.16□□□□□ -1.58
COL5A1P20908 MIR1254-2-201ENST00000579553 63 ntBASIC5.16□□□□□ -1.58
COL5A1P20908 AL352984.2-202ENST00000613699 155 ntBASIC5.16□□□□□ -1.58
COL5A1P20908 EIF3FP1-201ENST00000613970 806 ntBASIC5.16□□□□□ -1.58
COL5A1P20908 AC068831.8-201ENST00000620171 435 ntBASIC5.16□□□□□ -1.58
COL5A1P20908 Metazoa_SRP.193-201ENST00000622007 277 ntBASIC5.16□□□□□ -1.58
COL5A1P20908 WDPCP-202ENST00000398544 2063 ntAPPRIS ALT2 TSL 1 (best) BASIC5.16□□□□□ -1.58
COL5A1P20908 UGT2B11-201ENST00000446444 2088 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
COL5A1P20908 TANC2-202ENST00000424789 11721 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
COL5A1P20908 AC114774.1-201ENST00000507410 1770 ntBASIC5.15□□□□□ -1.58
COL5A1P20908 RASSF9-201ENST00000361228 5682 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.58
COL5A1P20908 METTL21EP-202ENST00000605100 2312 ntTSL 2 BASIC5.15□□□□□ -1.58
COL5A1P20908 SPINK5-201ENST00000256084 3535 ntAPPRIS P3 TSL 1 (best) BASIC5.15□□□□□ -1.58
COL5A1P20908 STAG1-201ENST00000236698 5951 ntTSL 1 (best) BASIC5.15□□□□□ -1.58
COL5A1P20908 UNC13B-209ENST00000635942 14550 ntAPPRIS ALT2 TSL 5 BASIC5.15□□□□□ -1.58
COL5A1P20908 MYPN-204ENST00000540630 5707 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.58
COL5A1P20908 CHRM5-201ENST00000383263 5410 ntAPPRIS P1 TSL 2 BASIC5.15□□□□□ -1.58
COL5A1P20908 CFAP126-201ENST00000367974 774 ntAPPRIS P1 TSL 2 BASIC5.15□□□□□ -1.59
COL5A1P20908 MTERF4-204ENST00000406593 802 ntTSL 2 BASIC5.15□□□□□ -1.59
COL5A1P20908 SMIM2-IT1-201ENST00000415082 478 ntTSL 3 BASIC5.15□□□□□ -1.59
COL5A1P20908 OXSM-202ENST00000420173 1256 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
COL5A1P20908 RHOT1P3-201ENST00000436571 331 ntBASIC5.15□□□□□ -1.59
COL5A1P20908 AL138878.2-201ENST00000440581 1241 ntBASIC5.15□□□□□ -1.59
COL5A1P20908 MTCYBP21-201ENST00000443300 1113 ntBASIC5.15□□□□□ -1.59
COL5A1P20908 AC007537.2-201ENST00000472093 511 ntBASIC5.15□□□□□ -1.59
COL5A1P20908 ADGRL3-AS1-202ENST00000504135 542 ntTSL 5 BASIC5.15□□□□□ -1.59
COL5A1P20908 C1GALT1P3-201ENST00000522049 819 ntBASIC5.15□□□□□ -1.59
COL5A1P20908 OR11H3P-201ENST00000554547 982 ntBASIC5.15□□□□□ -1.59
COL5A1P20908 AC087477.3-201ENST00000559214 552 ntTSL 4 BASIC5.15□□□□□ -1.59
COL5A1P20908 MIR4691-201ENST00000583764 85 ntBASIC5.15□□□□□ -1.59
COL5A1P20908 ERVK-28-203ENST00000600419 457 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
COL5A1P20908 AL392048.1-201ENST00000613946 534 ntBASIC5.15□□□□□ -1.59
COL5A1P20908 AC135068.5-201ENST00000624197 983 ntBASIC5.15□□□□□ -1.59
COL5A1P20908 AL359715.3-201ENST00000569267 2123 ntBASIC5.15□□□□□ -1.59
COL5A1P20908 CCDC62-205ENST00000537566 3537 ntAPPRIS ALT2 TSL 2 BASIC5.15□□□□□ -1.59
COL5A1P20908 MTERF1-202ENST00000406735 1639 ntAPPRIS ALT2 TSL 2 BASIC5.15□□□□□ -1.59
COL5A1P20908 PHLPP2-201ENST00000393524 8467 ntTSL 2 BASIC5.15□□□□□ -1.59
COL5A1P20908 ENPP3-203ENST00000414305 3418 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.59
COL5A1P20908 KCNQ3-205ENST00000621976 10659 ntAPPRIS ALT2 TSL 5 BASIC5.15□□□□□ -1.59
COL5A1P20908 STS-201ENST00000217961 6521 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.59
COL5A1P20908 MYO6-202ENST00000369977 5597 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.59
COL5A1P20908 SEMA3A-201ENST00000265362 8225 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.59
COL5A1P20908 LGALSL-202ENST00000409537 3298 ntTSL 5 BASIC5.15□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 108.8 ms