Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 MGAT2P2-201ENST00000427194 797 ntBASIC5.56□□□□□ -1.52
MSH3P20585 AC104843.2-201ENST00000427666 297 ntBASIC5.56□□□□□ -1.52
MSH3P20585 TRIM60P13-201ENST00000432350 1283 ntBASIC5.56□□□□□ -1.52
MSH3P20585 NPM1P18-201ENST00000434232 732 ntBASIC5.56□□□□□ -1.52
MSH3P20585 AC023271.1-201ENST00000445936 1090 ntBASIC5.56□□□□□ -1.52
MSH3P20585 AL500527.1-201ENST00000448532 255 ntBASIC5.56□□□□□ -1.52
MSH3P20585 AL513343.1-201ENST00000451818 792 ntBASIC5.56□□□□□ -1.52
MSH3P20585 ATP5LP5-201ENST00000483050 299 ntBASIC5.56□□□□□ -1.52
MSH3P20585 CLEC19A-204ENST00000493231 557 ntTSL 3 BASIC5.56□□□□□ -1.52
MSH3P20585 AC068672.3-203ENST00000505166 311 ntTSL 3 BASIC5.56□□□□□ -1.52
MSH3P20585 LINC02271-202ENST00000506379 596 ntTSL 4 BASIC5.56□□□□□ -1.52
MSH3P20585 AC138866.2-201ENST00000508650 584 ntBASIC5.56□□□□□ -1.52
MSH3P20585 AC064802.1-201ENST00000521523 866 ntTSL 2 BASIC5.56□□□□□ -1.52
MSH3P20585 AL121790.1-201ENST00000554829 738 ntTSL 3 BASIC5.56□□□□□ -1.52
MSH3P20585 AC010528.1-201ENST00000568714 739 ntTSL 4 BASIC5.56□□□□□ -1.52
MSH3P20585 AC098850.3-201ENST00000577569 771 ntTSL 3 BASIC5.56□□□□□ -1.52
MSH3P20585 GMCL1P2-201ENST00000605230 823 ntBASIC5.56□□□□□ -1.52
MSH3P20585 AC126175.1-201ENST00000617041 758 ntBASIC5.56□□□□□ -1.52
MSH3P20585 SNORA11.6-201ENST00000619030 128 ntBASIC5.56□□□□□ -1.52
MSH3P20585 OR52B4-201ENST00000624801 1124 ntAPPRIS P1 BASIC5.56□□□□□ -1.52
MSH3P20585 SNORA17.5-201ENST00000630429 132 ntBASIC5.56□□□□□ -1.52
MSH3P20585 AC103703.1-201ENST00000634783 663 ntBASIC5.56□□□□□ -1.52
MSH3P20585 GVQW2-203ENST00000641401 327 ntAPPRIS P1 BASIC5.56□□□□□ -1.52
MSH3P20585 AC005703.1-201ENST00000431343 1773 ntTSL 2 BASIC5.56□□□□□ -1.52
MSH3P20585 CCDC62-205ENST00000537566 3537 ntAPPRIS ALT2 TSL 2 BASIC5.56□□□□□ -1.52
MSH3P20585 BLZF1-203ENST00000367808 2749 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
MSH3P20585 IFIT1B-201ENST00000371809 1972 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
MSH3P20585 DSE-204ENST00000452085 10586 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
MSH3P20585 AC099811.1-201ENST00000597755 1496 ntTSL 3 BASIC5.56□□□□□ -1.52
MSH3P20585 NELL2-201ENST00000333837 2943 ntTSL 2 BASIC5.56□□□□□ -1.52
MSH3P20585 ZFX-211ENST00000539115 6801 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
MSH3P20585 EIF3M-208ENST00000531120 5051 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
MSH3P20585 ACSL5-202ENST00000354655 3351 ntAPPRIS P1 TSL 2 BASIC5.56□□□□□ -1.52
MSH3P20585 AC083899.1-201ENST00000454465 3819 ntBASIC5.56□□□□□ -1.52
MSH3P20585 AC005005.4-201ENST00000623789 16698 ntBASIC5.56□□□□□ -1.52
MSH3P20585 AC027279.1-201ENST00000568885 4284 ntBASIC5.56□□□□□ -1.52
MSH3P20585 ZNF420-202ENST00000337995 3535 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
MSH3P20585 SEC31A-204ENST00000355196 4104 ntAPPRIS P4 TSL 2 BASIC5.55□□□□□ -1.52
MSH3P20585 C3orf35-203ENST00000425564 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC5.55□□□□□ -1.52
MSH3P20585 MT-RNR2-201ENST00000387347 1559 ntBASIC5.55□□□□□ -1.52
MSH3P20585 AC097063.1-201ENST00000426714 1797 ntBASIC5.55□□□□□ -1.52
MSH3P20585 OR8D4-201ENST00000321355 1331 ntAPPRIS P1 BASIC5.55□□□□□ -1.52
MSH3P20585 PHF11-215ENST00000488958 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC5.55□□□□□ -1.52
MSH3P20585 RPL7-204ENST00000396467 1526 ntTSL 3 BASIC5.55□□□□□ -1.52
MSH3P20585 AP000473.2-201ENST00000602659 1537 ntBASIC5.55□□□□□ -1.52
MSH3P20585 KIAA0391-209ENST00000604948 1706 ntAPPRIS ALT2 TSL 2 BASIC5.55□□□□□ -1.52
MSH3P20585 MYBPC1-216ENST00000550270 3426 ntAPPRIS ALT2 TSL 5 BASIC5.55□□□□□ -1.52
MSH3P20585 GAPDHP24-201ENST00000328713 983 ntBASIC5.55□□□□□ -1.52
MSH3P20585 RNA5SP326-201ENST00000363209 110 ntBASIC5.55□□□□□ -1.52
MSH3P20585 CDY17P-201ENST00000414121 1282 ntBASIC5.55□□□□□ -1.52
MSH3P20585 BMS1P17-202ENST00000416720 316 ntBASIC5.55□□□□□ -1.52
MSH3P20585 AC013268.2-201ENST00000420753 337 ntBASIC5.55□□□□□ -1.52
MSH3P20585 AL133173.1-201ENST00000423458 397 ntBASIC5.55□□□□□ -1.52
MSH3P20585 TNPO1P1-201ENST00000423641 1138 ntBASIC5.55□□□□□ -1.52
MSH3P20585 AL021153.1-201ENST00000427360 308 ntTSL 3 BASIC5.55□□□□□ -1.52
MSH3P20585 MTATP6P11-201ENST00000428071 670 ntBASIC5.55□□□□□ -1.52
MSH3P20585 AL024474.2-201ENST00000431309 501 ntTSL 3 BASIC5.55□□□□□ -1.52
MSH3P20585 NANOGP9-201ENST00000439890 892 ntBASIC5.55□□□□□ -1.52
MSH3P20585 CD200R1L-202ENST00000448932 750 ntAPPRIS ALT2 TSL 5 BASIC5.55□□□□□ -1.52
MSH3P20585 AP000547.1-201ENST00000454360 617 ntBASIC5.55□□□□□ -1.52
MSH3P20585 LDHBP2-201ENST00000456969 1005 ntBASIC5.55□□□□□ -1.52
MSH3P20585 SETP20-201ENST00000457046 852 ntBASIC5.55□□□□□ -1.52
MSH3P20585 MTCYBP14-201ENST00000457471 715 ntBASIC5.55□□□□□ -1.52
MSH3P20585 RN7SL72P-201ENST00000460697 269 ntBASIC5.55□□□□□ -1.52
MSH3P20585 SEPT7P9-201ENST00000475691 413 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
MSH3P20585 RPL7P51-201ENST00000490532 749 ntBASIC5.55□□□□□ -1.52
MSH3P20585 AC104109.1-201ENST00000498563 436 ntBASIC5.55□□□□□ -1.52
MSH3P20585 GOLGA5P1-201ENST00000507317 980 ntBASIC5.55□□□□□ -1.52
MSH3P20585 AC011389.1-203ENST00000513790 573 ntTSL 4 BASIC5.55□□□□□ -1.52
MSH3P20585 TMEM97P2-201ENST00000517841 403 ntBASIC5.55□□□□□ -1.52
MSH3P20585 AC083923.2-201ENST00000519880 574 ntTSL 4 BASIC5.55□□□□□ -1.52
MSH3P20585 CCDC60-203ENST00000536742 886 ntAPPRIS ALT2 TSL 2 BASIC5.55□□□□□ -1.52
MSH3P20585 SLC7A7-210ENST00000554517 1158 ntTSL 5 BASIC5.55□□□□□ -1.52
MSH3P20585 AC026992.1-201ENST00000558269 571 ntTSL 2 BASIC5.55□□□□□ -1.52
MSH3P20585 AC116158.1-201ENST00000560231 2129 ntBASIC5.55□□□□□ -1.52
MSH3P20585 AC009117.3-202ENST00000563825 557 ntTSL 4 BASIC5.55□□□□□ -1.52
MSH3P20585 MRPS21P7-201ENST00000566937 238 ntBASIC5.55□□□□□ -1.52
MSH3P20585 AC090403.1-204ENST00000582893 572 ntTSL 4 BASIC5.55□□□□□ -1.52
MSH3P20585 H3F3BP2-201ENST00000583907 357 ntBASIC5.55□□□□□ -1.52
MSH3P20585 AC011990.1-201ENST00000592809 734 ntTSL 3 BASIC5.55□□□□□ -1.52
MSH3P20585 AC002069.2-201ENST00000603580 883 ntBASIC5.55□□□□□ -1.52
MSH3P20585 AC026786.2-201ENST00000606110 392 ntTSL 3 BASIC5.55□□□□□ -1.52
MSH3P20585 Metazoa_SRP.111-201ENST00000614073 259 ntBASIC5.55□□□□□ -1.52
MSH3P20585 REV3L-214ENST00000619481 969 ntTSL 5 BASIC5.55□□□□□ -1.52
MSH3P20585 AC007683.2-201ENST00000624681 714 ntBASIC5.55□□□□□ -1.52
MSH3P20585 ASB14-201ENST00000389601 3175 ntAPPRIS ALT2 TSL 5 BASIC5.55□□□□□ -1.52
MSH3P20585 ZNF92-203ENST00000431504 2947 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
MSH3P20585 SLC1A3-201ENST00000265113 4170 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
MSH3P20585 MYBPC1-221ENST00000551300 3934 ntAPPRIS ALT2 TSL 1 (best) BASIC5.55□□□□□ -1.52
MSH3P20585 ARHGAP24-201ENST00000264343 4572 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
MSH3P20585 SERPINB7-207ENST00000546027 1951 ntAPPRIS P1 TSL 2 BASIC5.55□□□□□ -1.52
MSH3P20585 KARSP1-201ENST00000451871 1752 ntBASIC5.55□□□□□ -1.52
MSH3P20585 AC068870.3-201ENST00000625077 2536 ntBASIC5.54□□□□□ -1.52
MSH3P20585 ST8SIA4-201ENST00000231461 6303 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
MSH3P20585 ORC4-215ENST00000536575 6328 ntTSL 2 BASIC5.54□□□□□ -1.52
MSH3P20585 KCNJ10-205ENST00000638728 4351 ntAPPRIS P1 TSL 5 BASIC5.54□□□□□ -1.52
MSH3P20585 OR4F13P-202ENST00000560066 2054 ntBASIC5.54□□□□□ -1.52
MSH3P20585 PINCR-201ENST00000440955 2228 ntTSL 2 BASIC5.54□□□□□ -1.52
MSH3P20585 AC144833.1-201ENST00000567953 4089 ntBASIC5.54□□□□□ -1.52
MSH3P20585 PREPL-201ENST00000260648 3672 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 75.6 ms