Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 PTPRT-209ENST00000612229 11285 ntTSL 5 BASIC6.81□□□□□ -1.32
COL6A1P12109 AC005332.9-201ENST00000620266 2921 ntBASIC6.81□□□□□ -1.32
COL6A1P12109 NIN-217ENST00000530997 8368 ntAPPRIS P5 TSL 5 BASIC6.81□□□□□ -1.32
COL6A1P12109 AL158064.2-203ENST00000639897 2003 ntTSL 5 BASIC6.81□□□□□ -1.32
COL6A1P12109 CNTNAP4-209ENST00000622250 3783 ntTSL 1 (best) BASIC6.81□□□□□ -1.32
COL6A1P12109 TCEANC2-201ENST00000234827 10436 ntAPPRIS P1 TSL 1 (best) BASIC6.81□□□□□ -1.32
COL6A1P12109 DAZ3-202ENST00000382365 3503 ntAPPRIS P5 TSL 1 (best) BASIC6.81□□□□□ -1.32
COL6A1P12109 NCOR1-204ENST00000395851 7950 ntTSL 1 (best) BASIC6.81□□□□□ -1.32
COL6A1P12109 REP15-201ENST00000310791 1078 ntAPPRIS P1 BASIC6.81□□□□□ -1.32
COL6A1P12109 CD84-201ENST00000311224 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC6.81□□□□□ -1.32
COL6A1P12109 RNA5SP500-201ENST00000364486 119 ntBASIC6.81□□□□□ -1.32
COL6A1P12109 RNU6-1320P-201ENST00000390838 107 ntBASIC6.81□□□□□ -1.32
COL6A1P12109 RNU6-1269P-201ENST00000391139 107 ntBASIC6.81□□□□□ -1.32
COL6A1P12109 ATP5F1P2-201ENST00000398143 760 ntBASIC6.81□□□□□ -1.32
COL6A1P12109 GAPDHP15-201ENST00000398586 975 ntBASIC6.81□□□□□ -1.32
COL6A1P12109 SKINT1L-201ENST00000401057 817 ntBASIC6.81□□□□□ -1.32
COL6A1P12109 NT5C3A-206ENST00000409787 840 ntTSL 2 BASIC6.81□□□□□ -1.32
COL6A1P12109 SNORA79B-201ENST00000410557 148 ntBASIC6.81□□□□□ -1.32
COL6A1P12109 LINC01442-201ENST00000414201 704 ntTSL 2 BASIC6.81□□□□□ -1.32
COL6A1P12109 TRIM60P17-201ENST00000415181 719 ntBASIC6.81□□□□□ -1.32
COL6A1P12109 AL121904.1-202ENST00000416638 656 ntTSL 5 BASIC6.81□□□□□ -1.32
COL6A1P12109 AC009502.1-203ENST00000416861 496 ntTSL 2 BASIC6.81□□□□□ -1.32
COL6A1P12109 RPS7P8-201ENST00000418311 581 ntBASIC6.81□□□□□ -1.32
COL6A1P12109 NANOGP5-201ENST00000424456 877 ntBASIC6.81□□□□□ -1.32
COL6A1P12109 LINC01745-201ENST00000430921 372 ntTSL 5 BASIC6.81□□□□□ -1.32
COL6A1P12109 RPS27P18-201ENST00000431701 247 ntBASIC6.81□□□□□ -1.32
COL6A1P12109 AC092839.1-201ENST00000433475 536 ntTSL 4 BASIC6.81□□□□□ -1.32
COL6A1P12109 LINC02528-202ENST00000434437 535 ntTSL 2 BASIC6.81□□□□□ -1.32
COL6A1P12109 LINC01878-201ENST00000434559 769 ntTSL 3 BASIC6.81□□□□□ -1.32
COL6A1P12109 AC245047.2-201ENST00000441060 530 ntBASIC6.81□□□□□ -1.32
COL6A1P12109 SPRYD7P1-201ENST00000443861 570 ntBASIC6.81□□□□□ -1.32
COL6A1P12109 ZNF619P1-201ENST00000446539 752 ntBASIC6.81□□□□□ -1.32
COL6A1P12109 AL589703.1-201ENST00000456032 256 ntTSL 5 BASIC6.81□□□□□ -1.32
COL6A1P12109 TPTE2P5-203ENST00000458118 728 ntBASIC6.81□□□□□ -1.32
COL6A1P12109 RNU6-599P-201ENST00000459383 107 ntBASIC6.81□□□□□ -1.32
COL6A1P12109 RNU6-1193P-201ENST00000459461 107 ntBASIC6.81□□□□□ -1.32
COL6A1P12109 AC010468.1-201ENST00000461022 817 ntBASIC6.81□□□□□ -1.32
COL6A1P12109 AL133445.1-201ENST00000467051 452 ntBASIC6.81□□□□□ -1.32
COL6A1P12109 NDUFA5P9-201ENST00000472609 340 ntBASIC6.81□□□□□ -1.32
COL6A1P12109 APOPT1-204ENST00000473127 739 ntTSL 3 BASIC6.81□□□□□ -1.32
COL6A1P12109 AC087071.2-201ENST00000483283 575 ntTSL 4 BASIC6.81□□□□□ -1.32
COL6A1P12109 OR11I1P-201ENST00000486033 954 ntBASIC6.81□□□□□ -1.32
COL6A1P12109 SUMO2P5-201ENST00000506790 245 ntBASIC6.81□□□□□ -1.32
COL6A1P12109 AC138866.2-201ENST00000508650 584 ntBASIC6.81□□□□□ -1.32
COL6A1P12109 AC097537.1-201ENST00000514864 1213 ntTSL 1 (best) BASIC6.81□□□□□ -1.32
COL6A1P12109 AC068672.3-201ENST00000524017 824 ntTSL 3 BASIC6.81□□□□□ -1.32
COL6A1P12109 AC084337.1-201ENST00000524809 686 ntBASIC6.81□□□□□ -1.32
COL6A1P12109 EIF4A2P5-201ENST00000529914 499 ntBASIC6.81□□□□□ -1.32
COL6A1P12109 AP001970.1-201ENST00000531681 701 ntTSL 3 BASIC6.81□□□□□ -1.32
COL6A1P12109 AC026894.1-201ENST00000532930 850 ntTSL 3 BASIC6.81□□□□□ -1.32
COL6A1P12109 AC006116.4-201ENST00000589671 452 ntTSL 2 BASIC6.81□□□□□ -1.32
COL6A1P12109 AL133247.2-201ENST00000603236 482 ntBASIC6.81□□□□□ -1.32
COL6A1P12109 IMMP1LP3-201ENST00000604197 224 ntBASIC6.81□□□□□ -1.32
COL6A1P12109 AC080013.3-201ENST00000606839 578 ntBASIC6.81□□□□□ -1.32
COL6A1P12109 AP005229.2-201ENST00000609980 697 ntBASIC6.81□□□□□ -1.32
COL6A1P12109 AL445649.1-201ENST00000615941 691 ntBASIC6.81□□□□□ -1.32
COL6A1P12109 AL645927.2-201ENST00000618350 349 ntBASIC6.81□□□□□ -1.32
COL6A1P12109 RNU6-368P-201ENST00000620928 107 ntBASIC6.81□□□□□ -1.32
COL6A1P12109 RNU6-538P-201ENST00000622329 107 ntBASIC6.81□□□□□ -1.32
COL6A1P12109 MME-203ENST00000460393 5622 ntAPPRIS P1 TSL 1 (best) BASIC6.81□□□□□ -1.32
COL6A1P12109 GCNT2-203ENST00000379597 4525 ntAPPRIS ALT1 TSL 1 (best) BASIC6.81□□□□□ -1.32
COL6A1P12109 C4BPAP1-201ENST00000415474 1893 ntBASIC6.81□□□□□ -1.32
COL6A1P12109 BNC1-202ENST00000569704 3169 ntAPPRIS ALT2 TSL 5 BASIC6.81□□□□□ -1.32
COL6A1P12109 TMC7-202ENST00000421369 4499 ntTSL 1 (best) BASIC6.81□□□□□ -1.32
COL6A1P12109 LINC01793-201ENST00000409590 2036 ntTSL 2 BASIC6.81□□□□□ -1.32
COL6A1P12109 MEPE-203ENST00000424957 2022 ntAPPRIS P3 TSL 2 BASIC6.81□□□□□ -1.32
COL6A1P12109 AC092725.2-201ENST00000567658 1389 ntBASIC6.81□□□□□ -1.32
COL6A1P12109 INTS6-203ENST00000442263 15428 ntTSL 1 (best) BASIC6.81□□□□□ -1.32
COL6A1P12109 ZNF682-201ENST00000358523 2161 ntTSL 2 BASIC6.81□□□□□ -1.32
COL6A1P12109 ATP10D-201ENST00000273859 6655 ntAPPRIS P1 TSL 1 (best) BASIC6.81□□□□□ -1.32
COL6A1P12109 AL590763.1-201ENST00000398297 1545 ntBASIC6.81□□□□□ -1.32
COL6A1P12109 ADAMDEC1-201ENST00000256412 2348 ntAPPRIS P3 TSL 1 (best) BASIC6.81□□□□□ -1.32
COL6A1P12109 PDE1C-203ENST00000396184 8852 ntTSL 1 (best) BASIC6.81□□□□□ -1.32
COL6A1P12109 PCBP1-AS1-210ENST00000416395 2451 ntTSL 2 BASIC6.81□□□□□ -1.32
COL6A1P12109 ATP1A1-203ENST00000369496 3572 ntTSL 2 BASIC6.8□□□□□ -1.32
COL6A1P12109 AC025809.2-201ENST00000625085 1802 ntBASIC6.8□□□□□ -1.32
COL6A1P12109 ZNF320-205ENST00000595635 6448 ntAPPRIS P1 TSL 2 BASIC6.8□□□□□ -1.32
COL6A1P12109 RANBP3L-202ENST00000502994 2278 ntAPPRIS ALT1 TSL 2 BASIC6.8□□□□□ -1.32
COL6A1P12109 AC117409.1-201ENST00000470499 1310 ntBASIC6.8□□□□□ -1.32
COL6A1P12109 FAM72B-201ENST00000355228 1773 ntTSL 1 (best) BASIC6.8□□□□□ -1.32
COL6A1P12109 BABAM2-206ENST00000379632 1752 ntTSL 1 (best) BASIC6.8□□□□□ -1.32
COL6A1P12109 ASTN2-AS1-201ENST00000418250 1756 ntTSL 2 BASIC6.8□□□□□ -1.32
COL6A1P12109 AC067956.1-201ENST00000414512 2062 ntTSL 1 (best) BASIC6.8□□□□□ -1.32
COL6A1P12109 ZNF211-205ENST00000391703 2239 ntTSL 2 BASIC6.8□□□□□ -1.32
COL6A1P12109 RPGRIP1L-206ENST00000564374 3877 ntTSL 2 BASIC6.8□□□□□ -1.32
COL6A1P12109 RLN1-201ENST00000223862 967 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
COL6A1P12109 OR4C11-201ENST00000302231 1045 ntAPPRIS P1 BASIC6.8□□□□□ -1.32
COL6A1P12109 ARHGAP32-201ENST00000310343 10111 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
COL6A1P12109 OR4S2-201ENST00000312422 936 ntAPPRIS P1 BASIC6.8□□□□□ -1.32
COL6A1P12109 AC096533.1-201ENST00000411645 353 ntBASIC6.8□□□□□ -1.32
COL6A1P12109 AF015720.1-201ENST00000412240 349 ntTSL 3 BASIC6.8□□□□□ -1.32
COL6A1P12109 AL391832.1-201ENST00000423963 423 ntTSL 5 BASIC6.8□□□□□ -1.32
COL6A1P12109 RPP40P1-201ENST00000426762 456 ntBASIC6.8□□□□□ -1.32
COL6A1P12109 LINC00390-201ENST00000432331 340 ntTSL 5 BASIC6.8□□□□□ -1.32
COL6A1P12109 AC092811.1-202ENST00000433058 656 ntTSL 2 BASIC6.8□□□□□ -1.32
COL6A1P12109 MTCO3P5-201ENST00000433620 714 ntBASIC6.8□□□□□ -1.32
COL6A1P12109 PTP4A1P3-201ENST00000433661 420 ntBASIC6.8□□□□□ -1.32
COL6A1P12109 RPL7P33-201ENST00000444159 742 ntBASIC6.8□□□□□ -1.32
COL6A1P12109 AL451164.2-201ENST00000445932 597 ntTSL 2 BASIC6.8□□□□□ -1.32
COL6A1P12109 AC017067.1-201ENST00000448570 447 ntTSL 5 BASIC6.8□□□□□ -1.32
Retrieved 100 of 98,524 protein–RNA pairs in 90.5 ms