Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 AL390816.1-201ENST00000553990 322 ntTSL 3 BASIC5.05□□□□□ -1.6
LMX1BO60663 AL121594.4-201ENST00000556211 1196 ntBASIC5.05□□□□□ -1.6
LMX1BO60663 ZFAND6-208ENST00000558688 780 ntTSL 2 BASIC5.05□□□□□ -1.6
LMX1BO60663 AC090617.5-201ENST00000571815 528 ntTSL 3 BASIC5.05□□□□□ -1.6
LMX1BO60663 RPL26-204ENST00000578812 1002 ntTSL 2 BASIC5.05□□□□□ -1.6
LMX1BO60663 CXXC1P1-203ENST00000589302 746 ntTSL 3 BASIC5.05□□□□□ -1.6
LMX1BO60663 ZNF208-204ENST00000599916 740 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
LMX1BO60663 AL360012.1-201ENST00000602813 131 ntBASIC5.05□□□□□ -1.6
LMX1BO60663 LINC00632-204ENST00000602830 597 ntTSL 4 BASIC5.05□□□□□ -1.6
LMX1BO60663 RNA5SP440-201ENST00000612665 119 ntBASIC5.05□□□□□ -1.6
LMX1BO60663 AC026367.3-201ENST00000619032 590 ntBASIC5.05□□□□□ -1.6
LMX1BO60663 OR8G3P-202ENST00000641572 1255 ntBASIC5.05□□□□□ -1.6
LMX1BO60663 AC079776.5-201ENST00000641920 211 ntBASIC5.05□□□□□ -1.6
LMX1BO60663 HACD3-209ENST00000566511 1782 ntTSL 5 BASIC5.05□□□□□ -1.6
LMX1BO60663 CASC19-260ENST00000641828 2001 ntBASIC5.05□□□□□ -1.6
LMX1BO60663 DOCK10-202ENST00000409592 7288 ntAPPRIS ALT2 TSL 1 (best) BASIC5.05□□□□□ -1.6
LMX1BO60663 MYBPC1-209ENST00000547509 3749 ntAPPRIS ALT2 TSL 5 BASIC5.05□□□□□ -1.6
LMX1BO60663 CEP85L-201ENST00000360290 1736 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
LMX1BO60663 NRDE2-201ENST00000354366 14208 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
LMX1BO60663 ATF7IP2-201ENST00000324570 3396 ntTSL 5 BASIC5.05□□□□□ -1.6
LMX1BO60663 MTCO1P4-201ENST00000520516 1409 ntBASIC5.05□□□□□ -1.6
LMX1BO60663 PTPRC-209ENST00000442510 5164 ntAPPRIS P4 TSL 1 (best) BASIC5.05□□□□□ -1.6
LMX1BO60663 GRIA2-202ENST00000296526 5621 ntAPPRIS P3 TSL 1 (best) BASIC5.05□□□□□ -1.6
LMX1BO60663 PDE4D-202ENST00000317118 2599 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
LMX1BO60663 CSMD1-215ENST00000537824 13512 ntAPPRIS ALT2 TSL 5 BASIC5.05□□□□□ -1.6
LMX1BO60663 SETDB2-205ENST00000611815 5313 ntAPPRIS ALT2 TSL 5 BASIC5.04□□□□□ -1.6
LMX1BO60663 DST-205ENST00000370765 8999 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
LMX1BO60663 NCOA7-202ENST00000368357 5521 ntAPPRIS P3 TSL 1 (best) BASIC5.04□□□□□ -1.6
LMX1BO60663 SAMMSON-210ENST00000641260 1308 ntBASIC5.04□□□□□ -1.6
LMX1BO60663 ANGPTL5-201ENST00000334289 2368 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
LMX1BO60663 CLEC2D-201ENST00000261339 465 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
LMX1BO60663 SPINK14-201ENST00000356972 294 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
LMX1BO60663 MRRF-203ENST00000373723 1176 ntTSL 3 BASIC5.04□□□□□ -1.6
LMX1BO60663 GCNT6-201ENST00000379591 934 ntBASIC5.04□□□□□ -1.6
LMX1BO60663 RNU6-152P-201ENST00000384037 107 ntBASIC5.04□□□□□ -1.6
LMX1BO60663 AL035405.1-201ENST00000400795 710 ntBASIC5.04□□□□□ -1.6
LMX1BO60663 ATP5F1P6-201ENST00000402768 767 ntBASIC5.04□□□□□ -1.6
LMX1BO60663 AL139039.2-201ENST00000407436 479 ntBASIC5.04□□□□□ -1.6
LMX1BO60663 AL358178.1-201ENST00000407698 397 ntBASIC5.04□□□□□ -1.6
LMX1BO60663 Z98742.1-201ENST00000419801 632 ntTSL 3 BASIC5.04□□□□□ -1.6
LMX1BO60663 BX510359.3-201ENST00000422168 306 ntBASIC5.04□□□□□ -1.6
LMX1BO60663 AL445528.1-201ENST00000426330 420 ntBASIC5.04□□□□□ -1.6
LMX1BO60663 TMEM196-204ENST00000433641 768 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
LMX1BO60663 MRPS33P4-201ENST00000434892 317 ntBASIC5.04□□□□□ -1.6
LMX1BO60663 AC099670.2-201ENST00000435130 321 ntBASIC5.04□□□□□ -1.6
LMX1BO60663 AL139161.2-201ENST00000438371 740 ntTSL 3 BASIC5.04□□□□□ -1.6
LMX1BO60663 AC015983.1-201ENST00000441577 373 ntBASIC5.04□□□□□ -1.6
LMX1BO60663 AL606490.8-201ENST00000441624 319 ntBASIC5.04□□□□□ -1.6
LMX1BO60663 RPS23P9-201ENST00000448848 438 ntBASIC5.04□□□□□ -1.6
LMX1BO60663 RPS3AP53-201ENST00000454716 778 ntBASIC5.04□□□□□ -1.6
LMX1BO60663 MTATP6P14-201ENST00000455189 673 ntBASIC5.04□□□□□ -1.6
LMX1BO60663 MTND2P30-201ENST00000456663 382 ntBASIC5.04□□□□□ -1.6
LMX1BO60663 AC023245.1-201ENST00000468501 517 ntBASIC5.04□□□□□ -1.6
LMX1BO60663 AC128716.1-201ENST00000475129 166 ntBASIC5.04□□□□□ -1.6
LMX1BO60663 AC245041.2-201ENST00000479781 376 ntTSL 5 BASIC5.04□□□□□ -1.6
LMX1BO60663 LINC01192-207ENST00000492553 836 ntTSL 5 BASIC5.04□□□□□ -1.6
LMX1BO60663 AC080013.1-206ENST00000496842 712 ntTSL 2 BASIC5.04□□□□□ -1.6
LMX1BO60663 PRB1-202ENST00000500254 775 ntAPPRIS P3 TSL 1 (best) BASIC5.04□□□□□ -1.6
LMX1BO60663 AC016550.1-201ENST00000505348 785 ntBASIC5.04□□□□□ -1.6
LMX1BO60663 AC021192.1-201ENST00000510169 791 ntTSL 3 BASIC5.04□□□□□ -1.6
LMX1BO60663 SPINK13-202ENST00000511106 661 ntAPPRIS ALT2 TSL 1 (best) BASIC5.04□□□□□ -1.6
LMX1BO60663 AC093535.1-201ENST00000515808 747 ntTSL 3 BASIC5.04□□□□□ -1.6
LMX1BO60663 CYCSP22-201ENST00000517555 339 ntBASIC5.04□□□□□ -1.6
LMX1BO60663 PKIA-AS1-201ENST00000519242 995 ntTSL 5 BASIC5.04□□□□□ -1.6
LMX1BO60663 IGHVIII-76-1-201ENST00000523776 286 ntBASIC5.04□□□□□ -1.6
LMX1BO60663 AC103855.3-201ENST00000528445 606 ntTSL 5 BASIC5.04□□□□□ -1.6
LMX1BO60663 AP000648.1-201ENST00000529682 397 ntBASIC5.04□□□□□ -1.6
LMX1BO60663 OR4A42P-201ENST00000531397 938 ntBASIC5.04□□□□□ -1.6
LMX1BO60663 AL121594.2-201ENST00000541658 472 ntBASIC5.04□□□□□ -1.6
LMX1BO60663 MYL6-213ENST00000549017 502 ntTSL 3 BASIC5.04□□□□□ -1.6
LMX1BO60663 GNG2-208ENST00000554875 430 ntTSL 5 BASIC5.04□□□□□ -1.6
LMX1BO60663 AL163195.3-202ENST00000555283 578 ntAPPRIS P1 TSL 4 BASIC5.04□□□□□ -1.6
LMX1BO60663 AC020704.1-201ENST00000559394 454 ntTSL 3 BASIC5.04□□□□□ -1.6
LMX1BO60663 SPINK14-202ENST00000562793 157 ntTSL 5 BASIC5.04□□□□□ -1.6
LMX1BO60663 ULK4P2-204ENST00000569682 798 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
LMX1BO60663 TMEM159-205ENST00000572599 713 ntAPPRIS P1 TSL 5 BASIC5.04□□□□□ -1.6
LMX1BO60663 FOPNL-207ENST00000575073 530 ntTSL 2 BASIC5.04□□□□□ -1.6
LMX1BO60663 MIR4489-201ENST00000578869 62 ntBASIC5.04□□□□□ -1.6
LMX1BO60663 AL589935.1-223ENST00000587015 808 ntTSL 5 BASIC5.04□□□□□ -1.6
LMX1BO60663 AC004223.2-201ENST00000590309 544 ntBASIC5.04□□□□□ -1.6
LMX1BO60663 AC012254.3-201ENST00000591183 2117 ntBASIC5.04□□□□□ -1.6
LMX1BO60663 ZNF561-AS1-207ENST00000591932 676 ntTSL 5 BASIC5.04□□□□□ -1.6
LMX1BO60663 LINC00907-210ENST00000593316 847 ntTSL 3 BASIC5.04□□□□□ -1.6
LMX1BO60663 AC211433.1-206ENST00000595409 733 ntTSL 5 BASIC5.04□□□□□ -1.6
LMX1BO60663 AC133794.1-201ENST00000602731 914 ntBASIC5.04□□□□□ -1.6
LMX1BO60663 LINC01050-201ENST00000604485 760 ntTSL 3 BASIC5.04□□□□□ -1.6
LMX1BO60663 AL031601.1-201ENST00000605702 394 ntBASIC5.04□□□□□ -1.6
LMX1BO60663 AL590426.2-201ENST00000607287 786 ntTSL 3 BASIC5.04□□□□□ -1.6
LMX1BO60663 LINC00458-206ENST00000607494 849 ntTSL 3 BASIC5.04□□□□□ -1.6
LMX1BO60663 ASNSD1-209ENST00000607829 581 ntTSL 2 BASIC5.04□□□□□ -1.6
LMX1BO60663 SDR42E1P1-201ENST00000611327 477 ntBASIC5.04□□□□□ -1.6
LMX1BO60663 CR589904.2-201ENST00000612533 440 ntBASIC5.04□□□□□ -1.6
LMX1BO60663 SATB1-AS1-237ENST00000626982 735 ntTSL 5 BASIC5.04□□□□□ -1.6
LMX1BO60663 MYOCOS-203ENST00000637303 564 ntAPPRIS P5 TSL 5 BASIC5.04□□□□□ -1.6
LMX1BO60663 OR2J1-202ENST00000641659 2144 ntAPPRIS P1 BASIC5.04□□□□□ -1.6
LMX1BO60663 OR5A2-203ENST00000641673 9444 ntAPPRIS P1 BASIC5.04□□□□□ -1.6
LMX1BO60663 USP15-201ENST00000280377 4748 ntAPPRIS ALT1 TSL 1 (best) BASIC5.04□□□□□ -1.6
LMX1BO60663 CTAGE5-217ENST00000557038 2869 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
LMX1BO60663 AL157938.3-201ENST00000502188 3084 ntTSL 4 BASIC5.04□□□□□ -1.6
LMX1BO60663 KLHL28-202ENST00000396128 6545 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 72.2 ms