Protein–RNA interactions for Protein: Q96RY7

IFT140, Intraflagellar transport protein 140 homolog, humanhuman

Predictions only

Length 1,462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140Q96RY7 CPS1-203ENST00000430249 5698 ntTSL 1 (best) BASIC8.72□□□□□ -1.01
IFT140Q96RY7 MID1-209ENST00000453318 6393 ntAPPRIS P1 TSL 5 BASIC8.72□□□□□ -1.01
IFT140Q96RY7 HDAC9-202ENST00000405010 4239 ntTSL 1 (best) BASIC8.72□□□□□ -1.01
IFT140Q96RY7 AL117339.5-201ENST00000640275 3955 ntAPPRIS P1 TSL 5 BASIC8.72□□□□□ -1.01
IFT140Q96RY7 OR9G4-201ENST00000302957 984 ntBASIC8.72□□□□□ -1.01
IFT140Q96RY7 RNA5SP515-201ENST00000364570 118 ntBASIC8.72□□□□□ -1.01
IFT140Q96RY7 AC118345.1-201ENST00000411785 366 ntTSL 3 BASIC8.72□□□□□ -1.01
IFT140Q96RY7 AL133419.1-201ENST00000423153 640 ntTSL 3 BASIC8.72□□□□□ -1.01
IFT140Q96RY7 AL121902.1-201ENST00000426963 459 ntTSL 2 BASIC8.72□□□□□ -1.01
IFT140Q96RY7 RPL12P39-201ENST00000455456 496 ntBASIC8.72□□□□□ -1.01
IFT140Q96RY7 AL133304.2-201ENST00000546376 886 ntTSL 2 BASIC8.72□□□□□ -1.01
IFT140Q96RY7 AL355095.1-201ENST00000554451 539 ntTSL 2 BASIC8.72□□□□□ -1.01
IFT140Q96RY7 BNIP3P22-201ENST00000593399 556 ntBASIC8.72□□□□□ -1.01
IFT140Q96RY7 AP001521.2-201ENST00000608772 546 ntBASIC8.72□□□□□ -1.01
IFT140Q96RY7 AL450226.2-201ENST00000622913 439 ntBASIC8.72□□□□□ -1.01
IFT140Q96RY7 REV3L-203ENST00000368805 10461 ntAPPRIS P1 TSL 5 BASIC8.72□□□□□ -1.01
IFT140Q96RY7 LIMA1-203ENST00000547825 3920 ntAPPRIS ALT2 TSL 1 (best) BASIC8.72□□□□□ -1.01
IFT140Q96RY7 NPHP1-203ENST00000393272 2752 ntTSL 1 (best) BASIC8.72□□□□□ -1.01
IFT140Q96RY7 SLC12A1-201ENST00000330289 1764 ntTSL 1 (best) BASIC8.72□□□□□ -1.01
IFT140Q96RY7 IFNG-AS1-202ENST00000538665 1791 ntTSL 2 BASIC8.72□□□□□ -1.01
IFT140Q96RY7 DHX40P1-201ENST00000588725 1412 ntBASIC8.72□□□□□ -1.01
IFT140Q96RY7 LINC00700-201ENST00000413603 2097 ntTSL 2 BASIC8.72□□□□□ -1.01
IFT140Q96RY7 RBMXL1-201ENST00000321792 4799 ntAPPRIS P1 TSL 1 (best) BASIC8.72□□□□□ -1.01
IFT140Q96RY7 GABRA1-218ENST00000637827 1838 ntAPPRIS P1 TSL 5 BASIC8.71□□□□□ -1.01
IFT140Q96RY7 THRB-202ENST00000356447 6345 ntAPPRIS P2 TSL 1 (best) BASIC8.71□□□□□ -1.01
IFT140Q96RY7 TAS2R3-201ENST00000247879 1101 ntAPPRIS P1 BASIC8.71□□□□□ -1.01
IFT140Q96RY7 CKS1B-201ENST00000308987 759 ntAPPRIS P1 TSL 1 (best) BASIC8.71□□□□□ -1.01
IFT140Q96RY7 RNA5SP191-201ENST00000362585 102 ntBASIC8.71□□□□□ -1.01
IFT140Q96RY7 COMMD6-204ENST00000377619 594 ntTSL 2 BASIC8.71□□□□□ -1.01
IFT140Q96RY7 IL6-206ENST00000407492 926 ntTSL 3 BASIC8.71□□□□□ -1.01
IFT140Q96RY7 C6orf52-203ENST00000426700 493 ntAPPRIS P2 TSL 2 BASIC8.71□□□□□ -1.01
IFT140Q96RY7 CT45A11P-201ENST00000448043 1134 ntBASIC8.71□□□□□ -1.01
IFT140Q96RY7 AC127526.3-201ENST00000534291 450 ntTSL 3 BASIC8.71□□□□□ -1.01
IFT140Q96RY7 AC090985.1-201ENST00000554440 480 ntTSL 2 BASIC8.71□□□□□ -1.01
IFT140Q96RY7 AC087500.2-201ENST00000575056 498 ntTSL 5 BASIC8.71□□□□□ -1.01
IFT140Q96RY7 MIR4277-201ENST00000578298 84 ntBASIC8.71□□□□□ -1.01
IFT140Q96RY7 LINC02035-201ENST00000610128 5476 ntBASIC8.71□□□□□ -1.01
IFT140Q96RY7 AP001636.3-201ENST00000533954 2810 ntTSL 2 BASIC8.71□□□□□ -1.01
IFT140Q96RY7 MARCH7-201ENST00000259050 5922 ntAPPRIS P1 TSL 1 (best) BASIC8.71□□□□□ -1.01
IFT140Q96RY7 SLC9A6-212ENST00000637195 4858 ntTSL 5 BASIC8.71□□□□□ -1.02
IFT140Q96RY7 AP000866.6-201ENST00000638898 3579 ntBASIC8.71□□□□□ -1.02
IFT140Q96RY7 CAMK2D-202ENST00000342666 1940 ntTSL 5 BASIC8.71□□□□□ -1.02
IFT140Q96RY7 MAPK10-365ENST00000641902 3825 ntBASIC8.71□□□□□ -1.02
IFT140Q96RY7 MEF2C-210ENST00000506554 3469 ntTSL 5 BASIC8.71□□□□□ -1.02
IFT140Q96RY7 AL160286.3-201ENST00000569644 3294 ntTSL 2 BASIC8.71□□□□□ -1.02
IFT140Q96RY7 AC068870.1-201ENST00000563737 2455 ntBASIC8.71□□□□□ -1.02
IFT140Q96RY7 OR11H6-201ENST00000315519 993 ntAPPRIS P1 BASIC8.7□□□□□ -1.02
IFT140Q96RY7 RN7SKP227-201ENST00000364445 330 ntBASIC8.7□□□□□ -1.02
IFT140Q96RY7 HSPA8P15-201ENST00000401676 786 ntBASIC8.7□□□□□ -1.02
IFT140Q96RY7 MOBP-203ENST00000415443 577 ntAPPRIS ALT2 TSL 4 BASIC8.7□□□□□ -1.02
IFT140Q96RY7 CYP4F29P-201ENST00000420685 446 ntBASIC8.7□□□□□ -1.02
IFT140Q96RY7 OR11I1P-201ENST00000486033 954 ntBASIC8.7□□□□□ -1.02
IFT140Q96RY7 LINC01181-201ENST00000503718 556 ntTSL 4 BASIC8.7□□□□□ -1.02
IFT140Q96RY7 MRPS33P2-201ENST00000507850 322 ntBASIC8.7□□□□□ -1.02
IFT140Q96RY7 snoU109.5-201ENST00000516231 132 ntBASIC8.7□□□□□ -1.02
IFT140Q96RY7 NSMCE2-206ENST00000519010 848 ntTSL 2 BASIC8.7□□□□□ -1.02
IFT140Q96RY7 AC100784.1-201ENST00000522790 310 ntBASIC8.7□□□□□ -1.02
IFT140Q96RY7 ARL6IP1P3-201ENST00000524544 560 ntBASIC8.7□□□□□ -1.02
IFT140Q96RY7 CREBZF-209ENST00000534224 545 ntTSL 4 BASIC8.7□□□□□ -1.02
IFT140Q96RY7 AC009396.1-201ENST00000553628 1079 ntTSL 2 BASIC8.7□□□□□ -1.02
IFT140Q96RY7 NQO1-206ENST00000564043 892 ntTSL 1 (best) BASIC8.7□□□□□ -1.02
IFT140Q96RY7 AC087633.2-201ENST00000618611 725 ntTSL 3 BASIC8.7□□□□□ -1.02
IFT140Q96RY7 CLASP2-225ENST00000635664 4176 ntTSL 5 BASIC8.7□□□□□ -1.02
IFT140Q96RY7 SELL-201ENST00000236147 2436 ntAPPRIS P1 TSL 1 (best) BASIC8.7□□□□□ -1.02
IFT140Q96RY7 SCAPER-203ENST00000538941 4853 ntTSL 1 (best) BASIC8.7□□□□□ -1.02
IFT140Q96RY7 KARSP3-201ENST00000571212 1504 ntBASIC8.7□□□□□ -1.02
IFT140Q96RY7 ADGRL3-214ENST00000511324 5042 ntTSL 5 BASIC8.7□□□□□ -1.02
IFT140Q96RY7 EEF1A1P33-201ENST00000554413 1362 ntBASIC8.7□□□□□ -1.02
IFT140Q96RY7 LINC00702-203ENST00000608792 6300 ntTSL 4 BASIC8.7□□□□□ -1.02
IFT140Q96RY7 AC012213.2-201ENST00000562917 4597 ntBASIC8.7□□□□□ -1.02
IFT140Q96RY7 LAMTOR3-201ENST00000226522 1220 ntTSL 3 BASIC8.7□□□□□ -1.02
IFT140Q96RY7 SNORD56.6-201ENST00000384569 71 ntBASIC8.7□□□□□ -1.02
IFT140Q96RY7 DOCK9-AS1-201ENST00000439367 392 ntTSL 3 BASIC8.7□□□□□ -1.02
IFT140Q96RY7 IGBP1P3-201ENST00000447449 1000 ntBASIC8.7□□□□□ -1.02
IFT140Q96RY7 AC010149.1-201ENST00000455357 571 ntTSL 4 BASIC8.7□□□□□ -1.02
IFT140Q96RY7 AC083829.1-201ENST00000503756 657 ntBASIC8.7□□□□□ -1.02
IFT140Q96RY7 AC026402.1-201ENST00000513642 170 ntBASIC8.7□□□□□ -1.02
IFT140Q96RY7 IGHVIII-2-1-201ENST00000518843 291 ntBASIC8.7□□□□□ -1.02
IFT140Q96RY7 MAL2-201ENST00000522112 573 ntTSL 4 BASIC8.7□□□□□ -1.02
IFT140Q96RY7 LINC02306-201ENST00000546412 529 ntTSL 3 BASIC8.7□□□□□ -1.02
IFT140Q96RY7 ZFAND6-204ENST00000558087 909 ntAPPRIS P1 TSL 5 BASIC8.7□□□□□ -1.02
IFT140Q96RY7 USP3-AS1-202ENST00000559357 455 ntTSL 2 BASIC8.7□□□□□ -1.02
IFT140Q96RY7 MIR4715-201ENST00000584117 79 ntBASIC8.7□□□□□ -1.02
IFT140Q96RY7 TTN-AS1-232ENST00000589487 1077 ntTSL 5 BASIC8.7□□□□□ -1.02
IFT140Q96RY7 AC009237.13-201ENST00000603193 276 ntBASIC8.7□□□□□ -1.02
IFT140Q96RY7 AL139041.1-201ENST00000605480 610 ntBASIC8.7□□□□□ -1.02
IFT140Q96RY7 AC092653.1-201ENST00000608509 531 ntBASIC8.7□□□□□ -1.02
IFT140Q96RY7 SLC10A7-202ENST00000394059 1730 ntTSL 1 (best) BASIC8.7□□□□□ -1.02
IFT140Q96RY7 ERVFRD-1-201ENST00000472091 3198 ntAPPRIS P1 TSL 1 (best) BASIC8.7□□□□□ -1.02
IFT140Q96RY7 TRIP12-201ENST00000283943 9874 ntAPPRIS P3 TSL 1 (best) BASIC8.69□□□□□ -1.02
IFT140Q96RY7 GRIK2-205ENST00000369138 4921 ntTSL 1 (best) BASIC8.69□□□□□ -1.02
IFT140Q96RY7 ABCA1-202ENST00000374736 10494 ntAPPRIS P1 TSL 1 (best) BASIC8.69□□□□□ -1.02
IFT140Q96RY7 AL031651.1-201ENST00000615357 1438 ntBASIC8.69□□□□□ -1.02
IFT140Q96RY7 NFAT5-212ENST00000627621 5875 ntAPPRIS ALT1 TSL 2 BASIC8.69□□□□□ -1.02
IFT140Q96RY7 OR7D2-203ENST00000642043 3157 ntAPPRIS P1 BASIC8.69□□□□□ -1.02
IFT140Q96RY7 OSBPL9-203ENST00000428468 2893 ntAPPRIS P3 TSL 1 (best) BASIC8.69□□□□□ -1.02
IFT140Q96RY7 MIER3-205ENST00000409421 2152 ntTSL 2 BASIC8.69□□□□□ -1.02
IFT140Q96RY7 TNFSF4-201ENST00000281834 3470 ntAPPRIS P1 TSL 1 (best) BASIC8.69□□□□□ -1.02
IFT140Q96RY7 NREP-206ENST00000447165 2304 ntAPPRIS P1 TSL 1 (best) BASIC8.69□□□□□ -1.02
IFT140Q96RY7 KIAA0100-203ENST00000544884 6856 ntAPPRIS ALT2 TSL 1 (best) BASIC8.69□□□□□ -1.02
Retrieved 100 of 98,524 protein–RNA pairs in 115 ms