Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 AC092168.1-201ENST00000443030 236 ntTSL 5 BASIC5.65□□□□□ -1.5
VMP1Q96GC9 HMGN1P2-201ENST00000445197 310 ntBASIC5.65□□□□□ -1.5
VMP1Q96GC9 AC112187.1-201ENST00000455837 479 ntBASIC5.65□□□□□ -1.5
VMP1Q96GC9 RPL5P13-201ENST00000462840 709 ntBASIC5.65□□□□□ -1.5
VMP1Q96GC9 RN7SL352P-201ENST00000466002 277 ntBASIC5.65□□□□□ -1.5
VMP1Q96GC9 AC083795.1-201ENST00000491760 320 ntBASIC5.65□□□□□ -1.5
VMP1Q96GC9 MGST2-204ENST00000506797 634 ntTSL 2 BASIC5.65□□□□□ -1.5
VMP1Q96GC9 AC011632.2-201ENST00000520696 738 ntTSL 3 BASIC5.65□□□□□ -1.5
VMP1Q96GC9 AC022784.5-201ENST00000522241 437 ntBASIC5.65□□□□□ -1.5
VMP1Q96GC9 CRYAB-205ENST00000526180 1017 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
VMP1Q96GC9 AC010768.4-201ENST00000528183 520 ntTSL 3 BASIC5.65□□□□□ -1.5
VMP1Q96GC9 AC079905.1-201ENST00000549280 475 ntBASIC5.65□□□□□ -1.5
VMP1Q96GC9 AL049779.3-201ENST00000557141 606 ntBASIC5.65□□□□□ -1.5
VMP1Q96GC9 AC009087.1-201ENST00000561827 369 ntTSL 3 BASIC5.65□□□□□ -1.5
VMP1Q96GC9 RNU4ATAC-201ENST00000580972 127 ntBASIC5.65□□□□□ -1.5
VMP1Q96GC9 AC008109.1-201ENST00000583163 826 ntTSL 2 BASIC5.65□□□□□ -1.5
VMP1Q96GC9 AP005121.1-202ENST00000584414 555 ntTSL 2 BASIC5.65□□□□□ -1.5
VMP1Q96GC9 Z98949.1-228ENST00000595093 798 ntTSL 5 BASIC5.65□□□□□ -1.5
VMP1Q96GC9 AC092070.2-201ENST00000597550 545 ntTSL 4 BASIC5.65□□□□□ -1.5
VMP1Q96GC9 AL138895.2-201ENST00000603019 178 ntBASIC5.65□□□□□ -1.5
VMP1Q96GC9 AL353804.2-201ENST00000603360 347 ntTSL 5 BASIC5.65□□□□□ -1.5
VMP1Q96GC9 SSX4B-202ENST00000619890 1092 ntTSL 5 BASIC5.65□□□□□ -1.5
VMP1Q96GC9 SSX4-202ENST00000620320 1092 ntTSL 5 BASIC5.65□□□□□ -1.5
VMP1Q96GC9 AC129778.1-202ENST00000623812 261 ntBASIC5.65□□□□□ -1.5
VMP1Q96GC9 AL591379.1-207ENST00000635982 261 ntBASIC5.65□□□□□ -1.5
VMP1Q96GC9 AMYH02020865.1-205ENST00000636189 261 ntBASIC5.65□□□□□ -1.5
VMP1Q96GC9 MIR1910-201ENST00000636955 80 ntBASIC5.65□□□□□ -1.5
VMP1Q96GC9 AKAP4-201ENST00000358526 2881 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
VMP1Q96GC9 ANO3-202ENST00000525139 3257 ntAPPRIS ALT1 TSL 5 BASIC5.65□□□□□ -1.51
VMP1Q96GC9 ZNF93-201ENST00000343769 2648 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
VMP1Q96GC9 LINC01091-203ENST00000514823 5262 ntTSL 1 (best) BASIC5.65□□□□□ -1.51
VMP1Q96GC9 NR3C2-202ENST00000344721 5712 ntAPPRIS P1 TSL 5 BASIC5.65□□□□□ -1.51
VMP1Q96GC9 AC005005.4-201ENST00000623789 16698 ntBASIC5.65□□□□□ -1.51
VMP1Q96GC9 CLHC1-203ENST00000406076 1777 ntTSL 1 (best) BASIC5.65□□□□□ -1.51
VMP1Q96GC9 AGO3-203ENST00000373191 19687 ntAPPRIS P1 TSL 2 BASIC5.65□□□□□ -1.51
VMP1Q96GC9 HYDIN-201ENST00000288168 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC5.64□□□□□ -1.51
VMP1Q96GC9 DOCK9-207ENST00000442173 7643 ntAPPRIS ALT2 TSL 5 BASIC5.64□□□□□ -1.51
VMP1Q96GC9 AMN1-208ENST00000537562 1538 ntTSL 5 BASIC5.64□□□□□ -1.51
VMP1Q96GC9 SENP1-205ENST00000549595 1932 ntAPPRIS ALT1 TSL 5 BASIC5.64□□□□□ -1.51
VMP1Q96GC9 FAM135A-202ENST00000361499 5042 ntAPPRIS ALT1 TSL 1 (best) BASIC5.64□□□□□ -1.51
VMP1Q96GC9 MECOM-217ENST00000494292 3939 ntAPPRIS ALT2 TSL 5 BASIC5.64□□□□□ -1.51
VMP1Q96GC9 AC021242.1-201ENST00000507315 2035 ntBASIC5.64□□□□□ -1.51
VMP1Q96GC9 SPATA2P1-201ENST00000431223 2055 ntBASIC5.64□□□□□ -1.51
VMP1Q96GC9 SMG1P6-201ENST00000532337 2930 ntBASIC5.64□□□□□ -1.51
VMP1Q96GC9 GABRA2-202ENST00000381620 2525 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
VMP1Q96GC9 RAD51AP1-202ENST00000352618 2113 ntAPPRIS P3 TSL 1 (best) BASIC5.64□□□□□ -1.51
VMP1Q96GC9 TPT1-204ENST00000379060 764 ntTSL 5 BASIC5.64□□□□□ -1.51
VMP1Q96GC9 RNU6-178P-201ENST00000384631 104 ntBASIC5.64□□□□□ -1.51
VMP1Q96GC9 MIR1282-201ENST00000408865 101 ntBASIC5.64□□□□□ -1.51
VMP1Q96GC9 MS4A6A-202ENST00000420732 863 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
VMP1Q96GC9 TMX2P1-201ENST00000436507 708 ntBASIC5.64□□□□□ -1.51
VMP1Q96GC9 AL353751.1-203ENST00000437032 603 ntTSL 3 BASIC5.64□□□□□ -1.51
VMP1Q96GC9 RPS10P18-201ENST00000442662 495 ntBASIC5.64□□□□□ -1.51
VMP1Q96GC9 AL512593.1-201ENST00000444758 779 ntBASIC5.64□□□□□ -1.51
VMP1Q96GC9 AC099063.2-201ENST00000446360 662 ntBASIC5.64□□□□□ -1.51
VMP1Q96GC9 AC005077.1-201ENST00000449226 375 ntBASIC5.64□□□□□ -1.51
VMP1Q96GC9 MIS18A-AS1-201ENST00000453549 769 ntTSL 5 BASIC5.64□□□□□ -1.51
VMP1Q96GC9 SELENOT-204ENST00000480740 783 ntTSL 3 BASIC5.64□□□□□ -1.51
VMP1Q96GC9 TIFA-202ENST00000500655 769 ntAPPRIS P1 TSL 3 BASIC5.64□□□□□ -1.51
VMP1Q96GC9 PCNAP1-201ENST00000505363 709 ntBASIC5.64□□□□□ -1.51
VMP1Q96GC9 AC025458.1-201ENST00000506046 166 ntBASIC5.64□□□□□ -1.51
VMP1Q96GC9 AC025470.2-201ENST00000506106 897 ntTSL 2 BASIC5.64□□□□□ -1.51
VMP1Q96GC9 LINC02503-201ENST00000510505 812 ntTSL 2 BASIC5.64□□□□□ -1.51
VMP1Q96GC9 AC104997.1-201ENST00000519761 717 ntBASIC5.64□□□□□ -1.51
VMP1Q96GC9 OR8Q1P-201ENST00000526467 655 ntBASIC5.64□□□□□ -1.51
VMP1Q96GC9 GLYATL1P2-201ENST00000529451 510 ntTSL 2 BASIC5.64□□□□□ -1.51
VMP1Q96GC9 AC107918.3-201ENST00000533272 382 ntBASIC5.64□□□□□ -1.51
VMP1Q96GC9 AP002518.2-201ENST00000544925 393 ntTSL 5 BASIC5.64□□□□□ -1.51
VMP1Q96GC9 C1GALT1P1-201ENST00000548895 1089 ntBASIC5.64□□□□□ -1.51
VMP1Q96GC9 AL591770.1-201ENST00000554475 1131 ntTSL 3 BASIC5.64□□□□□ -1.51
VMP1Q96GC9 AL355075.2-201ENST00000555435 478 ntTSL 2 BASIC5.64□□□□□ -1.51
VMP1Q96GC9 SETP1-201ENST00000556014 845 ntBASIC5.64□□□□□ -1.51
VMP1Q96GC9 AP001007.3-201ENST00000560744 356 ntTSL 5 BASIC5.64□□□□□ -1.51
VMP1Q96GC9 AC018767.2-201ENST00000562361 600 ntTSL 5 BASIC5.64□□□□□ -1.51
VMP1Q96GC9 AC009962.1-201ENST00000567327 3813 ntBASIC5.64□□□□□ -1.51
VMP1Q96GC9 AC090826.1-203ENST00000569235 490 ntBASIC5.64□□□□□ -1.51
VMP1Q96GC9 AC117569.1-201ENST00000584482 739 ntTSL 3 BASIC5.64□□□□□ -1.51
VMP1Q96GC9 AC008894.1-201ENST00000587693 367 ntTSL 5 BASIC5.64□□□□□ -1.51
VMP1Q96GC9 AC068020.1-201ENST00000594215 661 ntBASIC5.64□□□□□ -1.51
VMP1Q96GC9 AC130352.1-201ENST00000602979 661 ntBASIC5.64□□□□□ -1.51
VMP1Q96GC9 AC067773.1-201ENST00000603284 1094 ntBASIC5.64□□□□□ -1.51
VMP1Q96GC9 AC004160.1-201ENST00000625468 929 ntTSL 5 BASIC5.64□□□□□ -1.51
VMP1Q96GC9 AC079776.5-201ENST00000641920 211 ntBASIC5.64□□□□□ -1.51
VMP1Q96GC9 GNL2P1-201ENST00000451274 2190 ntBASIC5.64□□□□□ -1.51
VMP1Q96GC9 LRRK2-201ENST00000298910 9158 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
VMP1Q96GC9 AC114774.1-201ENST00000507410 1770 ntBASIC5.64□□□□□ -1.51
VMP1Q96GC9 LINC01619-207ENST00000551843 2205 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
VMP1Q96GC9 VSNL1-203ENST00000406397 2725 ntAPPRIS P1 TSL 5 BASIC5.64□□□□□ -1.51
VMP1Q96GC9 AC093535.2-201ENST00000624769 2326 ntBASIC5.64□□□□□ -1.51
VMP1Q96GC9 USF3-202ENST00000478658 8461 ntAPPRIS P2 TSL 5 BASIC5.64□□□□□ -1.51
VMP1Q96GC9 PROX1-205ENST00000498508 8498 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
VMP1Q96GC9 RC3H1-202ENST00000367694 3775 ntAPPRIS ALT1 TSL 2 BASIC5.64□□□□□ -1.51
VMP1Q96GC9 SLC26A7-201ENST00000276609 5263 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
VMP1Q96GC9 ZNF616-204ENST00000600228 4335 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
VMP1Q96GC9 ABCB5-202ENST00000404938 5811 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
VMP1Q96GC9 SLC12A1-205ENST00000558405 3426 ntAPPRIS P3 TSL 1 (best) BASIC5.64□□□□□ -1.51
VMP1Q96GC9 AC105411.1-201ENST00000568776 1470 ntTSL 4 BASIC5.64□□□□□ -1.51
VMP1Q96GC9 MFSD8-239ENST00000641590 2479 ntBASIC5.64□□□□□ -1.51
VMP1Q96GC9 ZNF493-203ENST00000392288 5023 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
VMP1Q96GC9 VWC2L-201ENST00000312504 4610 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 68.9 ms