Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 AC114954.1-201ENST00000506656 820 ntTSL 3 BASIC5.73□□□□□ -1.49
HDDC3Q8N4P3 NDUFB5P1-201ENST00000508134 564 ntBASIC5.73□□□□□ -1.49
HDDC3Q8N4P3 AC105384.2-201ENST00000508433 640 ntBASIC5.73□□□□□ -1.49
HDDC3Q8N4P3 CDH12P4-201ENST00000517835 295 ntBASIC5.73□□□□□ -1.49
HDDC3Q8N4P3 CDH12P3-201ENST00000517935 295 ntBASIC5.73□□□□□ -1.49
HDDC3Q8N4P3 CDH12P1-201ENST00000518435 295 ntBASIC5.73□□□□□ -1.49
HDDC3Q8N4P3 AC090541.1-201ENST00000519803 467 ntTSL 3 BASIC5.73□□□□□ -1.49
HDDC3Q8N4P3 NRBF2P4-201ENST00000520874 850 ntBASIC5.73□□□□□ -1.49
HDDC3Q8N4P3 AC025857.1-201ENST00000525252 377 ntBASIC5.73□□□□□ -1.49
HDDC3Q8N4P3 AC134775.1-201ENST00000531268 464 ntTSL 2 BASIC5.73□□□□□ -1.49
HDDC3Q8N4P3 ASB8-202ENST00000535055 657 ntTSL 2 BASIC5.73□□□□□ -1.49
HDDC3Q8N4P3 HAGLR-211ENST00000549329 609 ntTSL 4 BASIC5.73□□□□□ -1.49
HDDC3Q8N4P3 OR11H2-201ENST00000556246 948 ntAPPRIS P1 BASIC5.73□□□□□ -1.49
HDDC3Q8N4P3 AC113418.1-201ENST00000569928 517 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
HDDC3Q8N4P3 AC010401.3-201ENST00000576600 582 ntTSL 4 BASIC5.73□□□□□ -1.49
HDDC3Q8N4P3 MIR4420-201ENST00000583944 77 ntBASIC5.73□□□□□ -1.49
HDDC3Q8N4P3 AC022098.3-201ENST00000590715 315 ntTSL 3 BASIC5.73□□□□□ -1.49
HDDC3Q8N4P3 AC024940.4-201ENST00000605507 246 ntBASIC5.73□□□□□ -1.49
HDDC3Q8N4P3 NF1P10-201ENST00000613227 742 ntBASIC5.73□□□□□ -1.49
HDDC3Q8N4P3 METTL15-211ENST00000634762 718 ntTSL 5 BASIC5.73□□□□□ -1.49
HDDC3Q8N4P3 AC134980.1-203ENST00000640541 570 ntTSL 4 BASIC5.73□□□□□ -1.49
HDDC3Q8N4P3 SAMMSON-209ENST00000641222 1100 ntBASIC5.73□□□□□ -1.49
HDDC3Q8N4P3 SCN2A-207ENST00000631182 8430 ntAPPRIS ALT1 TSL 5 BASIC5.73□□□□□ -1.49
HDDC3Q8N4P3 DMTF1-204ENST00000413276 3548 ntTSL 5 BASIC5.73□□□□□ -1.49
HDDC3Q8N4P3 PFKFB2-202ENST00000367080 7094 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
HDDC3Q8N4P3 ZEB2-241ENST00000637304 9158 ntTSL 5 BASIC5.73□□□□□ -1.49
HDDC3Q8N4P3 PNLIPRP3-201ENST00000369230 2354 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
HDDC3Q8N4P3 MPDZ-208ENST00000447879 6262 ntAPPRIS ALT2 TSL 1 (best) BASIC5.73□□□□□ -1.49
HDDC3Q8N4P3 AC109811.1-201ENST00000512833 2807 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
HDDC3Q8N4P3 CYP4Z2P-201ENST00000423332 1512 ntBASIC5.73□□□□□ -1.49
HDDC3Q8N4P3 PARD3B-214ENST00000622699 7442 ntTSL 5 BASIC5.73□□□□□ -1.49
HDDC3Q8N4P3 TOP2B-201ENST00000264331 5358 ntAPPRIS ALT2 TSL 5 BASIC5.73□□□□□ -1.49
HDDC3Q8N4P3 LRRK2-201ENST00000298910 9158 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
HDDC3Q8N4P3 TCF7L2-222ENST00000627217 3680 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
HDDC3Q8N4P3 PHACTR2-207ENST00000427704 9531 ntAPPRIS ALT2 TSL 1 (best) BASIC5.72□□□□□ -1.49
HDDC3Q8N4P3 SEC31A-226ENST00000508479 3397 ntTSL 2 BASIC5.72□□□□□ -1.49
HDDC3Q8N4P3 PRRC1-201ENST00000296666 4699 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
HDDC3Q8N4P3 NDRG3-201ENST00000349004 2964 ntAPPRIS P4 TSL 1 (best) BASIC5.72□□□□□ -1.49
HDDC3Q8N4P3 DLG1-210ENST00000422288 2854 ntTSL 5 BASIC5.72□□□□□ -1.49
HDDC3Q8N4P3 GRIA4-204ENST00000428631 2778 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
HDDC3Q8N4P3 LCMT1-AS2-202ENST00000565214 5666 ntBASIC5.72□□□□□ -1.49
HDDC3Q8N4P3 RNA5-8SP5-201ENST00000365304 152 ntBASIC5.72□□□□□ -1.49
HDDC3Q8N4P3 AL353625.1-202ENST00000366273 571 ntBASIC5.72□□□□□ -1.49
HDDC3Q8N4P3 RPS26P38-201ENST00000414476 348 ntBASIC5.72□□□□□ -1.49
HDDC3Q8N4P3 LINC01614-201ENST00000415479 648 ntTSL 2 BASIC5.72□□□□□ -1.49
HDDC3Q8N4P3 AL157834.1-201ENST00000422744 420 ntTSL 3 BASIC5.72□□□□□ -1.49
HDDC3Q8N4P3 OR5W1P-201ENST00000423705 938 ntBASIC5.72□□□□□ -1.49
HDDC3Q8N4P3 MTCO1P51-201ENST00000427672 1060 ntBASIC5.72□□□□□ -1.49
HDDC3Q8N4P3 Z82246.1-201ENST00000428201 457 ntTSL 2 BASIC5.72□□□□□ -1.49
HDDC3Q8N4P3 AL365220.1-201ENST00000432923 399 ntBASIC5.72□□□□□ -1.49
HDDC3Q8N4P3 AL391097.2-201ENST00000435057 485 ntTSL 3 BASIC5.72□□□□□ -1.49
HDDC3Q8N4P3 AL122019.1-201ENST00000438575 798 ntTSL 3 BASIC5.72□□□□□ -1.49
HDDC3Q8N4P3 AL390879.1-201ENST00000439143 386 ntBASIC5.72□□□□□ -1.49
HDDC3Q8N4P3 OTX2P1-201ENST00000450956 354 ntBASIC5.72□□□□□ -1.49
HDDC3Q8N4P3 OR6C72P-201ENST00000451403 892 ntBASIC5.72□□□□□ -1.49
HDDC3Q8N4P3 AP000547.1-201ENST00000454360 617 ntBASIC5.72□□□□□ -1.49
HDDC3Q8N4P3 RPS23P2-201ENST00000463671 415 ntBASIC5.72□□□□□ -1.49
HDDC3Q8N4P3 UBA52P7-201ENST00000486088 380 ntBASIC5.72□□□□□ -1.49
HDDC3Q8N4P3 MORF4L2P1-201ENST00000503761 858 ntBASIC5.72□□□□□ -1.49
HDDC3Q8N4P3 MTCO3P42-201ENST00000509488 518 ntBASIC5.72□□□□□ -1.49
HDDC3Q8N4P3 MTCO3P39-201ENST00000514812 518 ntBASIC5.72□□□□□ -1.49
HDDC3Q8N4P3 MAL2-207ENST00000522828 603 ntTSL 3 BASIC5.72□□□□□ -1.49
HDDC3Q8N4P3 AL049779.2-201ENST00000553847 315 ntBASIC5.72□□□□□ -1.49
HDDC3Q8N4P3 MRPS21P7-201ENST00000566937 238 ntBASIC5.72□□□□□ -1.49
HDDC3Q8N4P3 AC015727.1-201ENST00000572792 512 ntTSL 5 BASIC5.72□□□□□ -1.49
HDDC3Q8N4P3 AC007014.1-201ENST00000572828 610 ntTSL 3 BASIC5.72□□□□□ -1.49
HDDC3Q8N4P3 AC090457.1-201ENST00000579775 211 ntTSL 3 BASIC5.72□□□□□ -1.49
HDDC3Q8N4P3 SLC14A2-AS1-201ENST00000585759 494 ntTSL 3 BASIC5.72□□□□□ -1.49
HDDC3Q8N4P3 ZNF667-AS1-207ENST00000592146 668 ntTSL 5 BASIC5.72□□□□□ -1.49
HDDC3Q8N4P3 MVP-219ENST00000629059 120 ntTSL 5 BASIC5.72□□□□□ -1.49
HDDC3Q8N4P3 CD86-204ENST00000469710 1604 ntTSL 2 BASIC5.72□□□□□ -1.49
HDDC3Q8N4P3 IFIT1B-201ENST00000371809 1972 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
HDDC3Q8N4P3 SLC12A1-201ENST00000330289 1764 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
HDDC3Q8N4P3 SRGAP1-201ENST00000355086 23331 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
HDDC3Q8N4P3 LGI1-202ENST00000371418 2381 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
HDDC3Q8N4P3 FAM19A1-201ENST00000478136 2014 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
HDDC3Q8N4P3 METTL15-201ENST00000303459 4068 ntTSL 2 BASIC5.72□□□□□ -1.49
HDDC3Q8N4P3 DDX58-201ENST00000379868 4089 ntTSL 5 BASIC5.72□□□□□ -1.49
HDDC3Q8N4P3 PRLR-203ENST00000348262 1339 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
HDDC3Q8N4P3 BACH1-201ENST00000286800 5669 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
HDDC3Q8N4P3 EOGT-208ENST00000540764 1584 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
HDDC3Q8N4P3 AC004656.1-201ENST00000568479 4951 ntBASIC5.72□□□□□ -1.49
HDDC3Q8N4P3 ZNF33B-208ENST00000613419 5843 ntAPPRIS ALT2 TSL 5 BASIC5.72□□□□□ -1.49
HDDC3Q8N4P3 AC022164.1-201ENST00000568767 2673 ntBASIC5.71□□□□□ -1.49
HDDC3Q8N4P3 EXD1-201ENST00000314992 2942 ntAPPRIS P3 TSL 1 (best) BASIC5.71□□□□□ -1.49
HDDC3Q8N4P3 FAM197Y8-201ENST00000426661 2340 ntTSL 2 BASIC5.71□□□□□ -1.49
HDDC3Q8N4P3 FAM197Y6-202ENST00000442145 2340 ntTSL 2 BASIC5.71□□□□□ -1.49
HDDC3Q8N4P3 LINC01206-204ENST00000482787 9580 ntTSL 1 (best) BASIC5.71□□□□□ -1.49
HDDC3Q8N4P3 CDC16-202ENST00000252458 1991 ntTSL 1 (best) BASIC5.71□□□□□ -1.49
HDDC3Q8N4P3 TLR5-205ENST00000540964 4088 ntAPPRIS P1 TSL 5 BASIC5.71□□□□□ -1.49
HDDC3Q8N4P3 PINCR-201ENST00000440955 2228 ntTSL 2 BASIC5.71□□□□□ -1.49
HDDC3Q8N4P3 TBCK-205ENST00000432496 3362 ntAPPRIS P1 TSL 2 BASIC5.71□□□□□ -1.5
HDDC3Q8N4P3 CCT6B-203ENST00000436961 1639 ntTSL 2 BASIC5.71□□□□□ -1.5
HDDC3Q8N4P3 RGSL1-201ENST00000294854 3696 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
HDDC3Q8N4P3 AC005703.1-201ENST00000431343 1773 ntTSL 2 BASIC5.71□□□□□ -1.5
HDDC3Q8N4P3 NLN-202ENST00000502464 8354 ntTSL 5 BASIC5.71□□□□□ -1.5
HDDC3Q8N4P3 SNORD1C-201ENST00000363315 78 ntBASIC5.71□□□□□ -1.5
HDDC3Q8N4P3 STMN1-202ENST00000374291 867 ntAPPRIS P1 TSL 2 BASIC5.71□□□□□ -1.5
HDDC3Q8N4P3 OR13C3-201ENST00000374781 1108 ntBASIC5.71□□□□□ -1.5
HDDC3Q8N4P3 AL139095.4-201ENST00000379928 500 ntTSL 2 BASIC5.71□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 105.6 ms