Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 DNAH7-202ENST00000409063 1845 ntTSL 1 (best) BASIC8.78□□□□□ -1
CUX1P39880 FOXP2-203ENST00000378237 2187 ntTSL 1 (best) BASIC8.78□□□□□ -1
CUX1P39880 TXNRD1-205ENST00000503506 3930 ntAPPRIS P2 TSL 1 (best) BASIC8.78□□□□□ -1
CUX1P39880 AL033384.1-202ENST00000431554 3104 ntTSL 1 (best) BASIC8.78□□□□□ -1
CUX1P39880 API5-210ENST00000534600 1760 ntTSL 5 BASIC8.78□□□□□ -1
CUX1P39880 N4BP2-201ENST00000261435 9744 ntAPPRIS P1 TSL 5 BASIC8.78□□□□□ -1
CUX1P39880 EIF4G2-208ENST00000526148 4001 ntAPPRIS ALT2 TSL 1 (best) BASIC8.78□□□□□ -1
CUX1P39880 LMO3-235ENST00000616247 3227 ntTSL 5 BASIC8.78□□□□□ -1
CUX1P39880 FCER1G-201ENST00000289902 591 ntAPPRIS P1 TSL 1 (best) BASIC8.78□□□□□ -1
CUX1P39880 AC135895.1-201ENST00000360528 1058 ntTSL 5 BASIC8.78□□□□□ -1
CUX1P39880 RN7SKP114-201ENST00000410327 279 ntBASIC8.78□□□□□ -1
CUX1P39880 TXNDC12-AS1-201ENST00000428794 391 ntTSL 3 BASIC8.78□□□□□ -1
CUX1P39880 AL162726.1-201ENST00000436084 455 ntTSL 3 BASIC8.78□□□□□ -1
CUX1P39880 AC112498.1-201ENST00000444401 332 ntBASIC8.78□□□□□ -1
CUX1P39880 MRPS33-209ENST00000496958 688 ntAPPRIS P1 TSL 3 BASIC8.78□□□□□ -1
CUX1P39880 AC083923.2-201ENST00000519880 574 ntTSL 4 BASIC8.78□□□□□ -1
CUX1P39880 AP003031.2-202ENST00000533590 572 ntTSL 4 BASIC8.78□□□□□ -1
CUX1P39880 RN7SL690P-201ENST00000582087 240 ntBASIC8.78□□□□□ -1
CUX1P39880 OR5D13-201ENST00000623930 945 ntAPPRIS P1 BASIC8.78□□□□□ -1
CUX1P39880 AP2B1-222ENST00000628168 192 ntTSL 5 BASIC8.78□□□□□ -1
CUX1P39880 AC107068.2-201ENST00000634611 447 ntTSL 2 BASIC8.78□□□□□ -1
CUX1P39880 PPP1R12B-216ENST00000608999 15248 ntAPPRIS P1 TSL 1 (best) BASIC8.78□□□□□ -1
CUX1P39880 NBPF8-201ENST00000583271 5330 ntBASIC8.78□□□□□ -1
CUX1P39880 SORCS1-210ENST00000622431 6701 ntTSL 5 BASIC8.78□□□□□ -1
CUX1P39880 LINC02466-201ENST00000500092 1963 ntTSL 1 (best) BASIC8.78□□□□□ -1
CUX1P39880 IRAK4-203ENST00000448290 1381 ntTSL 5 BASIC8.78□□□□□ -1
CUX1P39880 AC022893.1-201ENST00000517664 3549 ntTSL 2 BASIC8.78□□□□□ -1
CUX1P39880 ATP5S-202ENST00000311459 10212 ntAPPRIS P1 TSL 1 (best) BASIC8.77□□□□□ -1
CUX1P39880 FAM216B-201ENST00000313851 3243 ntAPPRIS P1 TSL 1 (best) BASIC8.77□□□□□ -1.01
CUX1P39880 AL136985.3-202ENST00000636386 2708 ntTSL 5 BASIC8.77□□□□□ -1.01
CUX1P39880 TTC8-217ENST00000622513 5270 ntAPPRIS P1 TSL 1 (best) BASIC8.77□□□□□ -1.01
CUX1P39880 FAM3C2-201ENST00000312214 681 ntBASIC8.77□□□□□ -1.01
CUX1P39880 SAMD13-202ENST00000370669 856 ntAPPRIS P1 TSL 3 BASIC8.77□□□□□ -1.01
CUX1P39880 RPL31-205ENST00000409320 716 ntAPPRIS ALT1 TSL 1 (best) BASIC8.77□□□□□ -1.01
CUX1P39880 AC004824.1-201ENST00000439577 311 ntTSL 5 BASIC8.77□□□□□ -1.01
CUX1P39880 NOP56P2-201ENST00000447491 769 ntBASIC8.77□□□□□ -1.01
CUX1P39880 LINC02218-202ENST00000504998 582 ntTSL 4 BASIC8.77□□□□□ -1.01
CUX1P39880 F11-AS1-201ENST00000505103 1178 ntTSL 1 (best) BASIC8.77□□□□□ -1.01
CUX1P39880 AC006427.1-201ENST00000514359 712 ntBASIC8.77□□□□□ -1.01
CUX1P39880 AC087360.1-201ENST00000518788 616 ntBASIC8.77□□□□□ -1.01
CUX1P39880 MIR4307HG-201ENST00000548170 822 ntTSL 3 BASIC8.77□□□□□ -1.01
CUX1P39880 OR11H7-201ENST00000553765 945 ntAPPRIS P1 BASIC8.77□□□□□ -1.01
CUX1P39880 FOPNL-207ENST00000575073 530 ntTSL 2 BASIC8.77□□□□□ -1.01
CUX1P39880 AC091042.1-201ENST00000579213 173 ntBASIC8.77□□□□□ -1.01
CUX1P39880 AC105254.2-201ENST00000603636 436 ntBASIC8.77□□□□□ -1.01
CUX1P39880 IPO11-203ENST00000409534 1725 ntTSL 2 BASIC8.77□□□□□ -1.01
CUX1P39880 OR51G2-202ENST00000641926 3326 ntAPPRIS P1 BASIC8.77□□□□□ -1.01
CUX1P39880 FOXN2-203ENST00000616844 1414 ntTSL 5 BASIC8.77□□□□□ -1.01
CUX1P39880 CREB5-201ENST00000357727 8532 ntAPPRIS P4 TSL 1 (best) BASIC8.77□□□□□ -1.01
CUX1P39880 LINC01450-201ENST00000443406 3263 ntTSL 1 (best) BASIC8.77□□□□□ -1.01
CUX1P39880 VPS53-204ENST00000437048 13106 ntAPPRIS P1 TSL 1 (best) BASIC8.77□□□□□ -1.01
CUX1P39880 PTPN3-203ENST00000412145 8765 ntTSL 1 (best) BASIC8.76□□□□□ -1.01
CUX1P39880 NCOA3-201ENST00000371997 6750 ntAPPRIS ALT2 TSL 1 (best) BASIC8.76□□□□□ -1.01
CUX1P39880 ASAH2-202ENST00000395526 6880 ntAPPRIS P1 TSL 1 (best) BASIC8.76□□□□□ -1.01
CUX1P39880 AC119751.6-201ENST00000416712 186 ntBASIC8.76□□□□□ -1.01
CUX1P39880 AL355870.1-201ENST00000448272 454 ntTSL 3 BASIC8.76□□□□□ -1.01
CUX1P39880 CXorf51A-201ENST00000458472 431 ntAPPRIS P1 TSL 2 BASIC8.76□□□□□ -1.01
CUX1P39880 AC084083.1-201ENST00000526947 722 ntTSL 5 BASIC8.76□□□□□ -1.01
CUX1P39880 AC138360.1-201ENST00000552332 386 ntTSL 3 BASIC8.76□□□□□ -1.01
CUX1P39880 ZNF534-202ENST00000332323 2086 ntAPPRIS P4 TSL 1 (best) BASIC8.76□□□□□ -1.01
CUX1P39880 SDAD1P1-202ENST00000524156 2051 ntBASIC8.76□□□□□ -1.01
CUX1P39880 OR52N5-202ENST00000641181 2778 ntAPPRIS P1 BASIC8.76□□□□□ -1.01
CUX1P39880 ZNF652-201ENST00000362063 5988 ntAPPRIS P1 TSL 1 (best) BASIC8.76□□□□□ -1.01
CUX1P39880 DPY19L3-202ENST00000392250 5998 ntAPPRIS P1 TSL 5 BASIC8.76□□□□□ -1.01
CUX1P39880 OR2T7-201ENST00000641057 3463 ntAPPRIS P1 BASIC8.76□□□□□ -1.01
CUX1P39880 DIAPH3-208ENST00000498416 2249 ntTSL 1 (best) BASIC8.76□□□□□ -1.01
CUX1P39880 LINC00507-201ENST00000540882 1935 ntTSL 5 BASIC8.75□□□□□ -1.01
CUX1P39880 LANCL1-204ENST00000441020 4503 ntAPPRIS P1 TSL 5 BASIC8.75□□□□□ -1.01
CUX1P39880 RNA5SP332-201ENST00000391063 115 ntBASIC8.75□□□□□ -1.01
CUX1P39880 AL356967.1-201ENST00000406305 431 ntBASIC8.75□□□□□ -1.01
CUX1P39880 AC007559.1-201ENST00000428736 355 ntBASIC8.75□□□□□ -1.01
CUX1P39880 ZBTB40-IT1-201ENST00000438551 273 ntTSL 3 BASIC8.75□□□□□ -1.01
CUX1P39880 TPT1P12-201ENST00000448968 492 ntBASIC8.75□□□□□ -1.01
CUX1P39880 GLUD1P3-202ENST00000508551 200 ntBASIC8.75□□□□□ -1.01
CUX1P39880 ASPH-226ENST00000522919 1277 ntTSL 3 BASIC8.75□□□□□ -1.01
CUX1P39880 SRD5A3-AS1-209ENST00000598819 552 ntTSL 5 BASIC8.75□□□□□ -1.01
CUX1P39880 CERS6-AS1-204ENST00000599361 536 ntTSL 4 BASIC8.75□□□□□ -1.01
CUX1P39880 AC009027.1-201ENST00000604510 479 ntBASIC8.75□□□□□ -1.01
CUX1P39880 PAK3-213ENST00000620137 2130 ntTSL 5 BASIC8.75□□□□□ -1.01
CUX1P39880 SNHG5-214ENST00000623001 598 ntTSL 2 BASIC8.75□□□□□ -1.01
CUX1P39880 C2orf83-206ENST00000642055 453 ntAPPRIS P3 BASIC8.75□□□□□ -1.01
CUX1P39880 AASDH-203ENST00000502617 3004 ntTSL 1 (best) BASIC8.75□□□□□ -1.01
CUX1P39880 DSC1-202ENST00000257198 4225 ntAPPRIS P4 TSL 2 BASIC8.75□□□□□ -1.01
CUX1P39880 AL132640.2-201ENST00000559968 1698 ntBASIC8.75□□□□□ -1.01
CUX1P39880 LMNTD1-201ENST00000282881 1718 ntAPPRIS P3 TSL 2 BASIC8.75□□□□□ -1.01
CUX1P39880 FBXW2-205ENST00000608872 9138 ntAPPRIS P1 TSL 1 (best) BASIC8.75□□□□□ -1.01
CUX1P39880 OR5AN1-202ENST00000641850 8468 ntAPPRIS P1 BASIC8.75□□□□□ -1.01
CUX1P39880 AL121594.3-201ENST00000557565 3857 ntAPPRIS P1 TSL 2 BASIC8.75□□□□□ -1.01
CUX1P39880 NBPF26-201ENST00000609741 3671 ntTSL 5 BASIC8.75□□□□□ -1.01
CUX1P39880 ARSD-AS1-201ENST00000414053 816 ntTSL 2 BASIC8.75□□□□□ -1.01
CUX1P39880 AL390036.1-201ENST00000419428 734 ntTSL 5 BASIC8.75□□□□□ -1.01
CUX1P39880 HSPD1P12-201ENST00000429127 1069 ntBASIC8.75□□□□□ -1.01
CUX1P39880 AC073062.1-201ENST00000434509 455 ntTSL 5 BASIC8.75□□□□□ -1.01
CUX1P39880 FAM237A-201ENST00000441223 773 ntAPPRIS P1 TSL 2 BASIC8.75□□□□□ -1.01
CUX1P39880 AC111000.4-201ENST00000504301 569 ntTSL 5 BASIC8.75□□□□□ -1.01
CUX1P39880 RN7SKP260-201ENST00000516907 149 ntBASIC8.75□□□□□ -1.01
CUX1P39880 AC012400.1-201ENST00000518452 381 ntBASIC8.75□□□□□ -1.01
CUX1P39880 AP005436.1-201ENST00000531454 488 ntTSL 2 BASIC8.75□□□□□ -1.01
CUX1P39880 DNAL1-206ENST00000554871 632 ntTSL 1 (best) BASIC8.75□□□□□ -1.01
CUX1P39880 AC108738.1-201ENST00000603703 237 ntBASIC8.75□□□□□ -1.01
Retrieved 100 of 98,524 protein–RNA pairs in 69.2 ms