Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 WT1-AS_8.1-201ENST00000615200 275 ntBASIC5.99□□□□□ -1.45
MSX2P35548 MRPL57P3-201ENST00000619218 176 ntBASIC5.99□□□□□ -1.45
MSX2P35548 AC241377.1-201ENST00000619797 406 ntBASIC5.99□□□□□ -1.45
MSX2P35548 AC073530.2-201ENST00000623987 261 ntBASIC5.99□□□□□ -1.45
MSX2P35548 TEX41-279ENST00000629149 609 ntTSL 5 BASIC5.99□□□□□ -1.45
MSX2P35548 MIR665-201ENST00000635949 72 ntBASIC5.99□□□□□ -1.45
MSX2P35548 AL133284.1-201ENST00000423715 4996 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
MSX2P35548 PROM1-201ENST00000447510 3977 ntAPPRIS P3 TSL 1 (best) BASIC5.99□□□□□ -1.45
MSX2P35548 TRIM75P-201ENST00000503032 1407 ntAPPRIS P1 BASIC5.99□□□□□ -1.45
MSX2P35548 ZNF658-201ENST00000612867 4160 ntAPPRIS P1 TSL 2 BASIC5.99□□□□□ -1.45
MSX2P35548 OR2A12-202ENST00000641592 4163 ntAPPRIS P1 BASIC5.99□□□□□ -1.45
MSX2P35548 TBC1D5-201ENST00000253692 7854 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
MSX2P35548 POSTN-204ENST00000379749 3210 ntTSL 5 BASIC5.99□□□□□ -1.45
MSX2P35548 ODAM-201ENST00000396094 1319 ntAPPRIS P1 TSL 5 BASIC5.99□□□□□ -1.45
MSX2P35548 MOCS2-201ENST00000361377 3568 ntTSL 4 BASIC5.98□□□□□ -1.45
MSX2P35548 SOX2-OT-218ENST00000498731 3576 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
MSX2P35548 NPHP1-204ENST00000417665 2246 ntTSL 5 BASIC5.98□□□□□ -1.45
MSX2P35548 LINC01844-201ENST00000432677 2237 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
MSX2P35548 OR5AS1-202ENST00000641320 7860 ntAPPRIS P1 BASIC5.98□□□□□ -1.45
MSX2P35548 AC116158.1-201ENST00000560231 2129 ntBASIC5.98□□□□□ -1.45
MSX2P35548 DNAH3-201ENST00000261383 12394 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
MSX2P35548 RGS6-204ENST00000404301 1497 ntAPPRIS ALT1 TSL 1 (best) BASIC5.98□□□□□ -1.45
MSX2P35548 RGS6-206ENST00000407322 1497 ntAPPRIS ALT1 TSL 1 (best) BASIC5.98□□□□□ -1.45
MSX2P35548 MSL3P1-202ENST00000440028 1468 ntBASIC5.98□□□□□ -1.45
MSX2P35548 HDAC1P2-201ENST00000453661 1398 ntBASIC5.98□□□□□ -1.45
MSX2P35548 DAOA-211ENST00000618629 1368 ntAPPRIS P3 TSL 5 BASIC5.98□□□□□ -1.45
MSX2P35548 AL354696.2-201ENST00000619407 1910 ntTSL 2 BASIC5.98□□□□□ -1.45
MSX2P35548 OR11H1-201ENST00000252835 982 ntAPPRIS P1 BASIC5.98□□□□□ -1.45
MSX2P35548 OR4P4-201ENST00000314612 939 ntAPPRIS P1 BASIC5.98□□□□□ -1.45
MSX2P35548 LINC01967-201ENST00000356047 755 ntTSL 5 BASIC5.98□□□□□ -1.45
MSX2P35548 RN7SKP130-201ENST00000364924 301 ntBASIC5.98□□□□□ -1.45
MSX2P35548 CRYZ-203ENST00000370871 1292 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
MSX2P35548 EQTN-202ENST00000380032 1033 ntAPPRIS P3 TSL 1 (best) BASIC5.98□□□□□ -1.45
MSX2P35548 RNU6-1005P-201ENST00000384519 107 ntBASIC5.98□□□□□ -1.45
MSX2P35548 RPL7P58-201ENST00000402913 758 ntBASIC5.98□□□□□ -1.45
MSX2P35548 AL096711.1-201ENST00000404780 554 ntBASIC5.98□□□□□ -1.45
MSX2P35548 RBMS3-AS1-201ENST00000414547 554 ntTSL 4 BASIC5.98□□□□□ -1.45
MSX2P35548 C14orf105-202ENST00000422976 1153 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
MSX2P35548 AL034379.1-201ENST00000423216 253 ntBASIC5.98□□□□□ -1.45
MSX2P35548 AC016027.5-201ENST00000427227 210 ntBASIC5.98□□□□□ -1.45
MSX2P35548 AL590399.2-201ENST00000427536 309 ntBASIC5.98□□□□□ -1.45
MSX2P35548 TMEM244-202ENST00000438392 565 ntAPPRIS P1 TSL 5 BASIC5.98□□□□□ -1.45
MSX2P35548 AL122019.1-201ENST00000438575 798 ntTSL 3 BASIC5.98□□□□□ -1.45
MSX2P35548 ISCA1P2-201ENST00000438679 421 ntBASIC5.98□□□□□ -1.45
MSX2P35548 EEF1A1P39-201ENST00000440791 250 ntBASIC5.98□□□□□ -1.45
MSX2P35548 AC004470.1-201ENST00000442155 382 ntTSL 5 BASIC5.98□□□□□ -1.45
MSX2P35548 LINC01832-201ENST00000446520 553 ntTSL 4 BASIC5.98□□□□□ -1.45
MSX2P35548 ST13P21-201ENST00000453250 1098 ntBASIC5.98□□□□□ -1.45
MSX2P35548 VPS25P1-201ENST00000455691 508 ntBASIC5.98□□□□□ -1.45
MSX2P35548 AC112187.1-201ENST00000455837 479 ntBASIC5.98□□□□□ -1.45
MSX2P35548 AC092754.2-201ENST00000463506 460 ntBASIC5.98□□□□□ -1.45
MSX2P35548 RSRC1-207ENST00000475278 1195 ntTSL 5 BASIC5.98□□□□□ -1.45
MSX2P35548 AC087071.2-201ENST00000483283 575 ntTSL 4 BASIC5.98□□□□□ -1.45
MSX2P35548 AC010409.2-201ENST00000505780 478 ntBASIC5.98□□□□□ -1.45
MSX2P35548 AC106800.3-201ENST00000511389 308 ntBASIC5.98□□□□□ -1.45
MSX2P35548 AC074087.1-201ENST00000512059 724 ntBASIC5.98□□□□□ -1.45
MSX2P35548 LINC01217-201ENST00000514427 562 ntTSL 4 BASIC5.98□□□□□ -1.45
MSX2P35548 LINC02465-204ENST00000514892 481 ntTSL 2 BASIC5.98□□□□□ -1.45
MSX2P35548 IGKV2-19-201ENST00000518132 283 ntBASIC5.98□□□□□ -1.45
MSX2P35548 MTCO1P49-201ENST00000523429 802 ntBASIC5.98□□□□□ -1.45
MSX2P35548 AP003969.1-201ENST00000531846 400 ntTSL 2 BASIC5.98□□□□□ -1.45
MSX2P35548 AP004607.5-201ENST00000532034 217 ntBASIC5.98□□□□□ -1.45
MSX2P35548 TPRXL-210ENST00000532753 478 ntTSL 4 BASIC5.98□□□□□ -1.45
MSX2P35548 SLC25A51P2-201ENST00000535708 889 ntBASIC5.98□□□□□ -1.45
MSX2P35548 SNHG1-211ENST00000539921 1071 ntTSL 2 BASIC5.98□□□□□ -1.45
MSX2P35548 MYL2-203ENST00000548438 664 ntTSL 3 BASIC5.98□□□□□ -1.45
MSX2P35548 LINC01467-201ENST00000554211 1187 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
MSX2P35548 GNG2-208ENST00000554875 430 ntTSL 5 BASIC5.98□□□□□ -1.45
MSX2P35548 OR11H2-201ENST00000556246 948 ntAPPRIS P1 BASIC5.98□□□□□ -1.45
MSX2P35548 AC079075.2-201ENST00000557964 449 ntTSL 4 BASIC5.98□□□□□ -1.45
MSX2P35548 AC023813.2-201ENST00000564321 469 ntBASIC5.98□□□□□ -1.45
MSX2P35548 MTND4LP24-201ENST00000572277 291 ntBASIC5.98□□□□□ -1.45
MSX2P35548 AC010127.1-205ENST00000595268 567 ntTSL 5 BASIC5.98□□□□□ -1.45
MSX2P35548 AP001267.4-201ENST00000602598 545 ntBASIC5.98□□□□□ -1.45
MSX2P35548 AC073137.1-201ENST00000605636 634 ntBASIC5.98□□□□□ -1.45
MSX2P35548 AL133243.1-201ENST00000614487 366 ntBASIC5.98□□□□□ -1.45
MSX2P35548 MIR6774-201ENST00000614651 70 ntBASIC5.98□□□□□ -1.45
MSX2P35548 AC015574.1-202ENST00000616588 456 ntTSL 5 BASIC5.98□□□□□ -1.45
MSX2P35548 AC010975.3-201ENST00000618727 978 ntBASIC5.98□□□□□ -1.45
MSX2P35548 AK6-205ENST00000618980 483 ntTSL 2 BASIC5.98□□□□□ -1.45
MSX2P35548 TTN-AS1-268ENST00000629094 604 ntTSL 5 BASIC5.98□□□□□ -1.45
MSX2P35548 AC027559.1-201ENST00000636288 271 ntBASIC5.98□□□□□ -1.45
MSX2P35548 AC099654.15-201ENST00000639802 509 ntBASIC5.98□□□□□ -1.45
MSX2P35548 OR8B2-202ENST00000641451 1056 ntAPPRIS P1 BASIC5.98□□□□□ -1.45
MSX2P35548 CDK1-202ENST00000373809 1613 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
MSX2P35548 ELOVL6-202ENST00000394607 6454 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
MSX2P35548 ERC1-222ENST00000589028 9202 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
MSX2P35548 DDX4-202ENST00000354991 2324 ntTSL 5 BASIC5.98□□□□□ -1.45
MSX2P35548 C4orf36-203ENST00000473559 2306 ntAPPRIS P1 TSL 2 BASIC5.98□□□□□ -1.45
MSX2P35548 SUN3-201ENST00000297325 1416 ntAPPRIS P1 TSL 5 BASIC5.98□□□□□ -1.45
MSX2P35548 CCDC150-202ENST00000409270 2243 ntAPPRIS ALT2 TSL 5 BASIC5.98□□□□□ -1.45
MSX2P35548 RIMS1-205ENST00000414192 1787 ntTSL 2 BASIC5.98□□□□□ -1.45
MSX2P35548 AL355834.1-201ENST00000556602 3965 ntBASIC5.98□□□□□ -1.45
MSX2P35548 AC104446.1-201ENST00000613728 1321 ntBASIC5.98□□□□□ -1.45
MSX2P35548 COPS4-209ENST00000511653 1695 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
MSX2P35548 SEC61A2-202ENST00000304267 2030 ntTSL 2 BASIC5.98□□□□□ -1.45
MSX2P35548 AL391704.1-201ENST00000422206 2368 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
MSX2P35548 AC008080.4-201ENST00000420185 1589 ntTSL 2 BASIC5.97□□□□□ -1.45
MSX2P35548 AC084816.1-210ENST00000540895 1920 ntTSL 2 BASIC5.97□□□□□ -1.45
MSX2P35548 NBPF20-205ENST00000622803 3689 ntTSL 5 BASIC5.97□□□□□ -1.45
Retrieved 100 of 98,524 protein–RNA pairs in 121.7 ms