Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 AL023583.1-201ENST00000607518 1143 ntBASIC5.58□□□□□ -1.52
MSH3P20585 AC008115.3-201ENST00000614874 549 ntBASIC5.58□□□□□ -1.52
MSH3P20585 CCL4L2-217ENST00000620250 667 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
MSH3P20585 KSR2-202ENST00000425217 17008 ntTSL 5 BASIC5.58□□□□□ -1.52
MSH3P20585 LINC02019-201ENST00000608605 2060 ntBASIC5.58□□□□□ -1.52
MSH3P20585 AL031595.2-201ENST00000624215 19071 ntBASIC5.58□□□□□ -1.52
MSH3P20585 YES1P1-201ENST00000418510 1628 ntBASIC5.58□□□□□ -1.52
MSH3P20585 ZNF518B-201ENST00000326756 6894 ntAPPRIS P1 TSL 3 BASIC5.58□□□□□ -1.52
MSH3P20585 GABRG1-201ENST00000295452 6785 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
MSH3P20585 CALCOCO2-204ENST00000448105 1916 ntTSL 2 BASIC5.58□□□□□ -1.52
MSH3P20585 ZNF677-201ENST00000333952 3422 ntAPPRIS P1 TSL 2 BASIC5.58□□□□□ -1.52
MSH3P20585 DTNA-227ENST00000597599 1869 ntAPPRIS ALT2 TSL 2 BASIC5.58□□□□□ -1.52
MSH3P20585 MAP3K7-201ENST00000369320 3328 ntTSL 5 BASIC5.58□□□□□ -1.52
MSH3P20585 LRRC49-223ENST00000560369 2586 ntAPPRIS ALT1 TSL 2 BASIC5.58□□□□□ -1.52
MSH3P20585 ZNF780A-204ENST00000455521 3600 ntAPPRIS ALT2 TSL 5 BASIC5.57□□□□□ -1.52
MSH3P20585 AC004158.1-201ENST00000564508 4319 ntBASIC5.57□□□□□ -1.52
MSH3P20585 NPY5R-202ENST00000506953 1418 ntAPPRIS P1 BASIC5.57□□□□□ -1.52
MSH3P20585 SLC12A1-201ENST00000330289 1764 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
MSH3P20585 DCN-202ENST00000393155 2133 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
MSH3P20585 CTAGE5-219ENST00000640607 4239 ntAPPRIS P5 TSL 1 (best) BASIC5.57□□□□□ -1.52
MSH3P20585 CASC19-255ENST00000641733 1385 ntBASIC5.57□□□□□ -1.52
MSH3P20585 EMSY-206ENST00000525038 4376 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
MSH3P20585 ALB-202ENST00000401494 1659 ntTSL 5 BASIC5.57□□□□□ -1.52
MSH3P20585 CDY11P-201ENST00000447168 1651 ntBASIC5.57□□□□□ -1.52
MSH3P20585 UGT2A2-202ENST00000604629 1676 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
MSH3P20585 SPINK14-201ENST00000356972 294 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
MSH3P20585 AL121886.1-201ENST00000358609 435 ntBASIC5.57□□□□□ -1.52
MSH3P20585 RN7SKP185-201ENST00000362813 326 ntBASIC5.57□□□□□ -1.52
MSH3P20585 RNA5SP131-201ENST00000365452 119 ntBASIC5.57□□□□□ -1.52
MSH3P20585 SMARCA2-207ENST00000382186 955 ntTSL 3 BASIC5.57□□□□□ -1.52
MSH3P20585 RNA5SP122-201ENST00000384457 108 ntBASIC5.57□□□□□ -1.52
MSH3P20585 CEACAM7-202ENST00000401731 1236 ntAPPRIS P1 TSL 2 BASIC5.57□□□□□ -1.52
MSH3P20585 RNA5SP178-201ENST00000410380 128 ntBASIC5.57□□□□□ -1.52
MSH3P20585 RN7SKP286-201ENST00000410894 299 ntBASIC5.57□□□□□ -1.52
MSH3P20585 AC096921.1-201ENST00000411661 375 ntBASIC5.57□□□□□ -1.52
MSH3P20585 USP9YP19-201ENST00000412165 485 ntBASIC5.57□□□□□ -1.52
MSH3P20585 AC092634.4-201ENST00000419937 423 ntTSL 3 BASIC5.57□□□□□ -1.52
MSH3P20585 MTND2P11-201ENST00000423638 648 ntBASIC5.57□□□□□ -1.52
MSH3P20585 AL669841.1-201ENST00000425723 558 ntTSL 2 BASIC5.57□□□□□ -1.52
MSH3P20585 RPS27AP6-201ENST00000427962 448 ntBASIC5.57□□□□□ -1.52
MSH3P20585 AL389925.1-201ENST00000432257 728 ntBASIC5.57□□□□□ -1.52
MSH3P20585 AC006335.2-201ENST00000437993 330 ntBASIC5.57□□□□□ -1.52
MSH3P20585 AP001604.1-201ENST00000447384 954 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
MSH3P20585 RPS23P9-201ENST00000448848 438 ntBASIC5.57□□□□□ -1.52
MSH3P20585 AL450344.1-201ENST00000456018 639 ntTSL 2 BASIC5.57□□□□□ -1.52
MSH3P20585 TPRKBP1-201ENST00000456243 481 ntBASIC5.57□□□□□ -1.52
MSH3P20585 AC089999.1-201ENST00000460336 374 ntBASIC5.57□□□□□ -1.52
MSH3P20585 AP002371.1-201ENST00000463604 433 ntBASIC5.57□□□□□ -1.52
MSH3P20585 SPRR2F-201ENST00000468739 681 ntAPPRIS P1 TSL 3 BASIC5.57□□□□□ -1.52
MSH3P20585 RWDD4P1-201ENST00000488019 565 ntBASIC5.57□□□□□ -1.52
MSH3P20585 AC135457.1-201ENST00000503553 664 ntTSL 3 BASIC5.57□□□□□ -1.52
MSH3P20585 ASNSP4-201ENST00000511103 447 ntBASIC5.57□□□□□ -1.52
MSH3P20585 AC097515.1-201ENST00000512370 435 ntTSL 2 BASIC5.57□□□□□ -1.52
MSH3P20585 IGLV3-24-201ENST00000517477 197 ntBASIC5.57□□□□□ -1.52
MSH3P20585 AC090753.1-201ENST00000522087 331 ntTSL 3 BASIC5.57□□□□□ -1.52
MSH3P20585 AP002370.2-202ENST00000533669 908 ntTSL 5 BASIC5.57□□□□□ -1.52
MSH3P20585 SPINK14-202ENST00000562793 157 ntTSL 5 BASIC5.57□□□□□ -1.52
MSH3P20585 AC007601.2-201ENST00000566957 502 ntTSL 3 BASIC5.57□□□□□ -1.52
MSH3P20585 RBM22P12-201ENST00000567098 1255 ntBASIC5.57□□□□□ -1.52
MSH3P20585 AC114947.2-202ENST00000569313 643 ntTSL 3 BASIC5.57□□□□□ -1.52
MSH3P20585 AP000897.2-201ENST00000579509 1057 ntTSL 3 BASIC5.57□□□□□ -1.52
MSH3P20585 MIR4505-201ENST00000582238 73 ntBASIC5.57□□□□□ -1.52
MSH3P20585 HCG18-243ENST00000602498 327 ntTSL 3 BASIC5.57□□□□□ -1.52
MSH3P20585 SNORA35B-201ENST00000607417 129 ntBASIC5.57□□□□□ -1.52
MSH3P20585 ASNSD1-209ENST00000607829 581 ntTSL 2 BASIC5.57□□□□□ -1.52
MSH3P20585 RN7SL787P-201ENST00000613000 284 ntBASIC5.57□□□□□ -1.52
MSH3P20585 DARS-AS1-225ENST00000615163 824 ntTSL 5 BASIC5.57□□□□□ -1.52
MSH3P20585 AP2B1-222ENST00000628168 192 ntTSL 5 BASIC5.57□□□□□ -1.52
MSH3P20585 ART3-202ENST00000349321 1528 ntAPPRIS P3 TSL 1 (best) BASIC5.57□□□□□ -1.52
MSH3P20585 AC067956.1-201ENST00000414512 2062 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
MSH3P20585 CYP2C8-210ENST00000535898 1799 ntTSL 2 BASIC5.57□□□□□ -1.52
MSH3P20585 TNRC6B-201ENST00000301923 15958 ntAPPRIS P3 TSL 5 BASIC5.57□□□□□ -1.52
MSH3P20585 ADH4-207ENST00000505590 1400 ntTSL 5 BASIC5.57□□□□□ -1.52
MSH3P20585 HNF4G-203ENST00000396423 4209 ntAPPRIS P3 TSL 1 (best) BASIC5.56□□□□□ -1.52
MSH3P20585 GTF2IRD2P1-202ENST00000618962 3055 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
MSH3P20585 C15orf54-202ENST00000625107 3078 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
MSH3P20585 AC020633.1-201ENST00000468439 2247 ntBASIC5.56□□□□□ -1.52
MSH3P20585 AFP-201ENST00000226359 1914 ntTSL 5 BASIC5.56□□□□□ -1.52
MSH3P20585 LMO3-201ENST00000261169 3810 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
MSH3P20585 NR3C2-202ENST00000344721 5712 ntAPPRIS P1 TSL 5 BASIC5.56□□□□□ -1.52
MSH3P20585 LRRC8B-201ENST00000330947 7593 ntAPPRIS P1 TSL 5 BASIC5.56□□□□□ -1.52
MSH3P20585 MCM9-209ENST00000619706 4822 ntAPPRIS P1 TSL 5 BASIC5.56□□□□□ -1.52
MSH3P20585 OR52A5-201ENST00000307388 3973 ntAPPRIS P1 BASIC5.56□□□□□ -1.52
MSH3P20585 PHF7-211ENST00000615126 1328 ntTSL 5 BASIC5.56□□□□□ -1.52
MSH3P20585 OR52A5-202ENST00000642125 3993 ntAPPRIS P1 BASIC5.56□□□□□ -1.52
MSH3P20585 BMPR2-204ENST00000638587 3443 ntTSL 5 BASIC5.56□□□□□ -1.52
MSH3P20585 C3orf67-209ENST00000482387 2617 ntTSL 5 BASIC5.56□□□□□ -1.52
MSH3P20585 AC021074.3-201ENST00000476385 1825 ntTSL 2 BASIC5.56□□□□□ -1.52
MSH3P20585 EBF1-211ENST00000622875 4430 ntTSL 5 BASIC5.56□□□□□ -1.52
MSH3P20585 HBG1-201ENST00000330597 808 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
MSH3P20585 CLEC4A-203ENST00000352620 615 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
MSH3P20585 PRH2-201ENST00000381847 641 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
MSH3P20585 TRAV10-201ENST00000390432 379 ntAPPRIS P1 BASIC5.56□□□□□ -1.52
MSH3P20585 SNORA17A-201ENST00000391185 133 ntBASIC5.56□□□□□ -1.52
MSH3P20585 AC005042.1-201ENST00000393397 800 ntBASIC5.56□□□□□ -1.52
MSH3P20585 AL009179.1-201ENST00000406085 265 ntBASIC5.56□□□□□ -1.52
MSH3P20585 GAPDHP42-201ENST00000406848 981 ntBASIC5.56□□□□□ -1.52
MSH3P20585 SNORA11.3-201ENST00000408471 128 ntBASIC5.56□□□□□ -1.52
MSH3P20585 Z98742.1-201ENST00000419801 632 ntTSL 3 BASIC5.56□□□□□ -1.52
MSH3P20585 AL390115.1-201ENST00000425271 423 ntTSL 5 BASIC5.56□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 114.4 ms