Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 WDR95P-201ENST00000425638 1542 ntBASIC7.39□□□□□ -1.23
CCDC39Q9UFE4 COMMD8-201ENST00000381571 1469 ntAPPRIS P1 TSL 1 (best) BASIC7.39□□□□□ -1.23
CCDC39Q9UFE4 ATP13A4-204ENST00000400270 1458 ntTSL 1 (best) BASIC7.39□□□□□ -1.23
CCDC39Q9UFE4 AC010132.4-201ENST00000569883 1368 ntBASIC7.39□□□□□ -1.23
CCDC39Q9UFE4 METTL5-202ENST00000308099 629 ntTSL 3 BASIC7.39□□□□□ -1.23
CCDC39Q9UFE4 ARGFX-201ENST00000334384 992 ntAPPRIS P1 TSL 3 BASIC7.39□□□□□ -1.23
CCDC39Q9UFE4 PLAC1-201ENST00000359237 1131 ntAPPRIS P1 TSL 1 (best) BASIC7.39□□□□□ -1.23
CCDC39Q9UFE4 RNU6-797P-201ENST00000363101 109 ntBASIC7.39□□□□□ -1.23
CCDC39Q9UFE4 RNU6-670P-201ENST00000364312 104 ntBASIC7.39□□□□□ -1.23
CCDC39Q9UFE4 TRBV6-7-201ENST00000390373 344 ntAPPRIS P1 BASIC7.39□□□□□ -1.23
CCDC39Q9UFE4 SNX10-203ENST00000409367 746 ntTSL 5 BASIC7.39□□□□□ -1.23
CCDC39Q9UFE4 RAP1BP1-201ENST00000412709 553 ntBASIC7.39□□□□□ -1.23
CCDC39Q9UFE4 SETP15-201ENST00000412724 337 ntBASIC7.39□□□□□ -1.23
CCDC39Q9UFE4 OR8G2P-201ENST00000412796 908 ntBASIC7.39□□□□□ -1.23
CCDC39Q9UFE4 AC023051.1-201ENST00000414098 876 ntTSL 5 BASIC7.39□□□□□ -1.23
CCDC39Q9UFE4 AL359962.1-201ENST00000417969 303 ntTSL 5 BASIC7.39□□□□□ -1.23
CCDC39Q9UFE4 AL035401.1-201ENST00000420572 871 ntTSL 3 BASIC7.39□□□□□ -1.23
CCDC39Q9UFE4 GNRHR-202ENST00000420975 859 ntTSL 1 (best) BASIC7.39□□□□□ -1.23
CCDC39Q9UFE4 AL365203.2-201ENST00000423444 196 ntBASIC7.39□□□□□ -1.23
CCDC39Q9UFE4 ZNF863P-201ENST00000426746 417 ntBASIC7.39□□□□□ -1.23
CCDC39Q9UFE4 SCP2-206ENST00000430330 938 ntTSL 2 BASIC7.39□□□□□ -1.23
CCDC39Q9UFE4 AL451164.3-201ENST00000441377 447 ntTSL 5 BASIC7.39□□□□□ -1.23
CCDC39Q9UFE4 AL360091.3-201ENST00000442146 387 ntTSL 5 BASIC7.39□□□□□ -1.23
CCDC39Q9UFE4 TAF9P1-201ENST00000445421 515 ntBASIC7.39□□□□□ -1.23
CCDC39Q9UFE4 AC034228.3-201ENST00000446275 562 ntTSL 3 BASIC7.39□□□□□ -1.23
CCDC39Q9UFE4 AL360091.1-201ENST00000447949 496 ntTSL 5 BASIC7.39□□□□□ -1.23
CCDC39Q9UFE4 TAF9P2-201ENST00000454958 515 ntBASIC7.39□□□□□ -1.23
CCDC39Q9UFE4 LINC00894-208ENST00000455777 284 ntTSL 2 BASIC7.39□□□□□ -1.23
CCDC39Q9UFE4 RN7SL37P-201ENST00000490461 307 ntBASIC7.39□□□□□ -1.23
CCDC39Q9UFE4 LINC02480-201ENST00000511875 612 ntTSL 2 BASIC7.39□□□□□ -1.23
CCDC39Q9UFE4 AP003472.1-201ENST00000519844 644 ntTSL 3 BASIC7.39□□□□□ -1.23
CCDC39Q9UFE4 LINC02143-201ENST00000519929 520 ntTSL 3 BASIC7.39□□□□□ -1.23
CCDC39Q9UFE4 AC087672.2-201ENST00000522498 429 ntTSL 2 BASIC7.39□□□□□ -1.23
CCDC39Q9UFE4 AC008429.2-201ENST00000523057 864 ntBASIC7.39□□□□□ -1.23
CCDC39Q9UFE4 AC105177.1-201ENST00000523110 555 ntTSL 4 BASIC7.39□□□□□ -1.23
CCDC39Q9UFE4 OR8G3P-201ENST00000533406 921 ntBASIC7.39□□□□□ -1.23
CCDC39Q9UFE4 AC090607.1-201ENST00000560057 449 ntTSL 3 BASIC7.39□□□□□ -1.23
CCDC39Q9UFE4 AC007346.2-201ENST00000564816 892 ntBASIC7.39□□□□□ -1.23
CCDC39Q9UFE4 PWRN1-210ENST00000568045 1299 ntTSL 2 BASIC7.39□□□□□ -1.23
CCDC39Q9UFE4 AC135628.1-201ENST00000568867 534 ntBASIC7.39□□□□□ -1.23
CCDC39Q9UFE4 RN7SL208P-201ENST00000577964 296 ntBASIC7.39□□□□□ -1.23
CCDC39Q9UFE4 ZNF790-AS1-201ENST00000587278 653 ntTSL 5 BASIC7.39□□□□□ -1.23
CCDC39Q9UFE4 ZNF43-209ENST00000598288 560 ntTSL 4 BASIC7.39□□□□□ -1.23
CCDC39Q9UFE4 AC021749.1-201ENST00000604322 607 ntBASIC7.39□□□□□ -1.23
CCDC39Q9UFE4 AC084036.1-201ENST00000609190 508 ntBASIC7.39□□□□□ -1.23
CCDC39Q9UFE4 AC093673.2-201ENST00000609674 331 ntBASIC7.39□□□□□ -1.23
CCDC39Q9UFE4 AC025253.1-201ENST00000613623 543 ntBASIC7.39□□□□□ -1.23
CCDC39Q9UFE4 AC124312.6-202ENST00000623624 418 ntBASIC7.39□□□□□ -1.23
CCDC39Q9UFE4 LINC00598-209ENST00000635966 1148 ntTSL 5 BASIC7.39□□□□□ -1.23
CCDC39Q9UFE4 AC068137.3-201ENST00000639191 341 ntBASIC7.39□□□□□ -1.23
CCDC39Q9UFE4 AC073869.6-201ENST00000640656 341 ntBASIC7.39□□□□□ -1.23
CCDC39Q9UFE4 ZNF525-201ENST00000467003 6107 ntTSL 4 BASIC7.39□□□□□ -1.23
CCDC39Q9UFE4 ADGRF1-203ENST00000371253 5468 ntAPPRIS P1 TSL 1 (best) BASIC7.39□□□□□ -1.23
CCDC39Q9UFE4 LRRC37B-204ENST00000543378 3091 ntAPPRIS ALT2 TSL 2 BASIC7.39□□□□□ -1.23
CCDC39Q9UFE4 CLVS1-203ENST00000518592 2880 ntTSL 1 (best) BASIC7.39□□□□□ -1.23
CCDC39Q9UFE4 FYB1-204ENST00000505428 2789 ntAPPRIS ALT2 TSL 1 (best) BASIC7.39□□□□□ -1.23
CCDC39Q9UFE4 BRIP1-201ENST00000259008 6048 ntAPPRIS P2 TSL 1 (best) BASIC7.39□□□□□ -1.23
CCDC39Q9UFE4 ZSCAN26-201ENST00000316606 2362 ntTSL 1 (best) BASIC7.39□□□□□ -1.23
CCDC39Q9UFE4 PCDH15-202ENST00000361849 7017 ntTSL 5 BASIC7.39□□□□□ -1.23
CCDC39Q9UFE4 PCDH15-205ENST00000373957 7032 ntTSL 5 BASIC7.39□□□□□ -1.23
CCDC39Q9UFE4 ZNF211-205ENST00000391703 2239 ntTSL 2 BASIC7.39□□□□□ -1.23
CCDC39Q9UFE4 AP000432.2-201ENST00000624164 2048 ntBASIC7.39□□□□□ -1.23
CCDC39Q9UFE4 OR7A10-202ENST00000641129 1847 ntAPPRIS P1 BASIC7.38□□□□□ -1.23
CCDC39Q9UFE4 LINC01751-201ENST00000569178 1770 ntTSL 1 (best) BASIC7.38□□□□□ -1.23
CCDC39Q9UFE4 PDE4B-203ENST00000371045 3982 ntTSL 1 (best) BASIC7.38□□□□□ -1.23
CCDC39Q9UFE4 CR848007.1-201ENST00000442354 1699 ntBASIC7.38□□□□□ -1.23
CCDC39Q9UFE4 CABYR-207ENST00000486759 1664 ntAPPRIS P4 TSL 5 BASIC7.38□□□□□ -1.23
CCDC39Q9UFE4 GLYATL1P1-201ENST00000528297 1607 ntBASIC7.38□□□□□ -1.23
CCDC39Q9UFE4 TCF4-284ENST00000637169 7553 ntTSL 5 BASIC7.38□□□□□ -1.23
CCDC39Q9UFE4 AC005674.2-201ENST00000561486 3510 ntTSL 1 (best) BASIC7.38□□□□□ -1.23
CCDC39Q9UFE4 AC004520.1-201ENST00000608362 1413 ntBASIC7.38□□□□□ -1.23
CCDC39Q9UFE4 OR10A6-204ENST00000642108 6104 ntAPPRIS P1 BASIC7.38□□□□□ -1.23
CCDC39Q9UFE4 LINC01505-205ENST00000636028 2298 ntTSL 5 BASIC7.38□□□□□ -1.23
CCDC39Q9UFE4 OR2M4-201ENST00000306687 936 ntAPPRIS P1 BASIC7.38□□□□□ -1.23
CCDC39Q9UFE4 TMEM202-201ENST00000341689 1012 ntAPPRIS P2 TSL 5 BASIC7.38□□□□□ -1.23
CCDC39Q9UFE4 ANKRD36P1-201ENST00000344424 659 ntBASIC7.38□□□□□ -1.23
CCDC39Q9UFE4 OR5K4-201ENST00000354924 966 ntAPPRIS P1 BASIC7.38□□□□□ -1.23
CCDC39Q9UFE4 RN7SKP28-201ENST00000364770 305 ntBASIC7.38□□□□□ -1.23
CCDC39Q9UFE4 ADPRM-201ENST00000379774 1209 ntAPPRIS P1 TSL 1 (best) BASIC7.38□□□□□ -1.23
CCDC39Q9UFE4 PRB3-201ENST00000381842 1091 ntAPPRIS ALT2 TSL 5 BASIC7.38□□□□□ -1.23
CCDC39Q9UFE4 SDHC-203ENST00000392169 369 ntTSL 1 (best) BASIC7.38□□□□□ -1.23
CCDC39Q9UFE4 AL021407.1-201ENST00000404531 386 ntBASIC7.38□□□□□ -1.23
CCDC39Q9UFE4 HNMT-204ENST00000410115 1150 ntAPPRIS P1 TSL 5 BASIC7.38□□□□□ -1.23
CCDC39Q9UFE4 MEAF6P1-201ENST00000416092 327 ntBASIC7.38□□□□□ -1.23
CCDC39Q9UFE4 CYCSP52-201ENST00000422857 310 ntBASIC7.38□□□□□ -1.23
CCDC39Q9UFE4 PTPN2P1-201ENST00000423212 1072 ntBASIC7.38□□□□□ -1.23
CCDC39Q9UFE4 MTCO1P52-201ENST00000433928 531 ntBASIC7.38□□□□□ -1.23
CCDC39Q9UFE4 AC139712.3-201ENST00000443926 639 ntTSL 2 BASIC7.38□□□□□ -1.23
CCDC39Q9UFE4 RPL31P53-201ENST00000457065 348 ntBASIC7.38□□□□□ -1.23
CCDC39Q9UFE4 RPL23AP64-201ENST00000469465 435 ntBASIC7.38□□□□□ -1.23
CCDC39Q9UFE4 RN7SL70P-201ENST00000478322 302 ntBASIC7.38□□□□□ -1.23
CCDC39Q9UFE4 AL079303.1-201ENST00000486611 463 ntBASIC7.38□□□□□ -1.23
CCDC39Q9UFE4 RN7SL350P-201ENST00000492591 299 ntBASIC7.38□□□□□ -1.23
CCDC39Q9UFE4 AC090058.1-201ENST00000498788 435 ntBASIC7.38□□□□□ -1.23
CCDC39Q9UFE4 AC034244.1-201ENST00000507687 207 ntBASIC7.38□□□□□ -1.23
CCDC39Q9UFE4 AC108157.1-201ENST00000510511 539 ntBASIC7.38□□□□□ -1.23
CCDC39Q9UFE4 ZCCHC10-209ENST00000513541 794 ntAPPRIS ALT2 TSL 2 BASIC7.38□□□□□ -1.23
CCDC39Q9UFE4 AC097173.2-201ENST00000518701 474 ntTSL 3 BASIC7.38□□□□□ -1.23
CCDC39Q9UFE4 HNRNPA1P74-201ENST00000560782 835 ntBASIC7.38□□□□□ -1.23
CCDC39Q9UFE4 AL390718.1-201ENST00000566904 506 ntTSL 3 BASIC7.38□□□□□ -1.23
Retrieved 100 of 98,524 protein–RNA pairs in 96.6 ms