Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 FAM66C-206ENST00000535567 724 ntTSL 5 BASIC6.32□□□□□ -1.4
USP39Q53GS9 AC004034.1-201ENST00000573260 510 ntTSL 3 BASIC6.32□□□□□ -1.4
USP39Q53GS9 AC090236.2-201ENST00000587933 1101 ntBASIC6.32□□□□□ -1.4
USP39Q53GS9 MRO-208ENST00000588444 866 ntTSL 3 BASIC6.32□□□□□ -1.4
USP39Q53GS9 AC008537.2-201ENST00000596135 482 ntTSL 3 BASIC6.32□□□□□ -1.4
USP39Q53GS9 LINC02033-202ENST00000623312 492 ntTSL 3 BASIC6.32□□□□□ -1.4
USP39Q53GS9 AC012564.1-201ENST00000636802 557 ntTSL 4 BASIC6.32□□□□□ -1.4
USP39Q53GS9 OR8G5-202ENST00000641707 1156 ntAPPRIS P1 BASIC6.32□□□□□ -1.4
USP39Q53GS9 LINC01951-201ENST00000377300 1925 ntTSL 2 BASIC6.32□□□□□ -1.4
USP39Q53GS9 TET1P1-201ENST00000426627 2301 ntBASIC6.32□□□□□ -1.4
USP39Q53GS9 CUL1-204ENST00000617797 2508 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
USP39Q53GS9 KANTR-203ENST00000604062 4251 ntAPPRIS P1 TSL 5 BASIC6.32□□□□□ -1.4
USP39Q53GS9 LGSN-204ENST00000622415 1612 ntTSL 2 BASIC6.32□□□□□ -1.4
USP39Q53GS9 AC093277.1-201ENST00000637776 1622 ntTSL 5 BASIC6.32□□□□□ -1.4
USP39Q53GS9 CLMN-201ENST00000298912 12747 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
USP39Q53GS9 AC110373.1-201ENST00000505994 3505 ntBASIC6.32□□□□□ -1.4
USP39Q53GS9 ZNF571-202ENST00000358744 2049 ntAPPRIS P1 TSL 2 BASIC6.32□□□□□ -1.4
USP39Q53GS9 ZNF211-205ENST00000391703 2239 ntTSL 2 BASIC6.31□□□□□ -1.4
USP39Q53GS9 ARHGAP15-201ENST00000295095 1775 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
USP39Q53GS9 CSNK1G1-202ENST00000561349 1756 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
USP39Q53GS9 HHLA2-206ENST00000467761 2379 ntAPPRIS P3 TSL 5 BASIC6.31□□□□□ -1.4
USP39Q53GS9 WDR72-208ENST00000614174 4224 ntTSL 2 BASIC6.31□□□□□ -1.4
USP39Q53GS9 POPDC3-201ENST00000254765 1345 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
USP39Q53GS9 AC006213.6-201ENST00000623722 4179 ntBASIC6.31□□□□□ -1.4
USP39Q53GS9 OR2T5-201ENST00000641363 2525 ntAPPRIS P1 BASIC6.31□□□□□ -1.4
USP39Q53GS9 TMPRSS15-201ENST00000284885 3947 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
USP39Q53GS9 HELZ-207ENST00000580168 6279 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
USP39Q53GS9 ARMCX5-201ENST00000246174 2899 ntAPPRIS P1 TSL 2 BASIC6.31□□□□□ -1.4
USP39Q53GS9 SPATA1-206ENST00000490879 2888 ntAPPRIS P1 TSL 5 BASIC6.31□□□□□ -1.4
USP39Q53GS9 FANCD2-205ENST00000431693 2450 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
USP39Q53GS9 SNORA21-201ENST00000362423 132 ntBASIC6.31□□□□□ -1.4
USP39Q53GS9 RNA5SP110-201ENST00000362638 115 ntBASIC6.31□□□□□ -1.4
USP39Q53GS9 SNORD51.1-201ENST00000365405 77 ntBASIC6.31□□□□□ -1.4
USP39Q53GS9 TMBIM4-203ENST00000398033 844 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
USP39Q53GS9 GAPDHP15-201ENST00000398586 975 ntBASIC6.31□□□□□ -1.4
USP39Q53GS9 AC000058.1-201ENST00000415249 536 ntTSL 4 BASIC6.31□□□□□ -1.4
USP39Q53GS9 HAO2-IT1-201ENST00000419144 311 ntTSL 5 BASIC6.31□□□□□ -1.4
USP39Q53GS9 AC092634.4-201ENST00000419937 423 ntTSL 3 BASIC6.31□□□□□ -1.4
USP39Q53GS9 AC013268.2-201ENST00000420753 337 ntBASIC6.31□□□□□ -1.4
USP39Q53GS9 CYCSP52-201ENST00000422857 310 ntBASIC6.31□□□□□ -1.4
USP39Q53GS9 MTND4LP13-201ENST00000425022 298 ntBASIC6.31□□□□□ -1.4
USP39Q53GS9 AC097721.1-201ENST00000427150 1253 ntBASIC6.31□□□□□ -1.4
USP39Q53GS9 LYPLA1P1-201ENST00000434514 622 ntBASIC6.31□□□□□ -1.4
USP39Q53GS9 OR3D1P-201ENST00000438288 955 ntBASIC6.31□□□□□ -1.4
USP39Q53GS9 C21orf91-OT1-203ENST00000439392 497 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
USP39Q53GS9 SNRPFP2-201ENST00000440710 251 ntBASIC6.31□□□□□ -1.4
USP39Q53GS9 PRR16-203ENST00000446965 1152 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
USP39Q53GS9 AC002553.3-201ENST00000453002 341 ntBASIC6.31□□□□□ -1.4
USP39Q53GS9 CST12P-201ENST00000457644 362 ntBASIC6.31□□□□□ -1.4
USP39Q53GS9 AC117386.1-201ENST00000474444 606 ntTSL 4 BASIC6.31□□□□□ -1.4
USP39Q53GS9 SSR3-206ENST00000476217 807 ntTSL 3 BASIC6.31□□□□□ -1.4
USP39Q53GS9 NECTIN3-AS1-205ENST00000491709 792 ntTSL 3 BASIC6.31□□□□□ -1.4
USP39Q53GS9 AC091965.3-201ENST00000506236 208 ntBASIC6.31□□□□□ -1.4
USP39Q53GS9 AC010343.2-201ENST00000510162 224 ntBASIC6.31□□□□□ -1.4
USP39Q53GS9 AC090958.1-201ENST00000511122 351 ntBASIC6.31□□□□□ -1.4
USP39Q53GS9 AC093599.1-201ENST00000515232 562 ntTSL 4 BASIC6.31□□□□□ -1.4
USP39Q53GS9 RNU5A-7P-201ENST00000515979 116 ntBASIC6.31□□□□□ -1.4
USP39Q53GS9 AC025871.2-201ENST00000522589 511 ntTSL 3 BASIC6.31□□□□□ -1.4
USP39Q53GS9 AP000424.2-201ENST00000523784 233 ntTSL 3 BASIC6.31□□□□□ -1.4
USP39Q53GS9 AC090819.1-201ENST00000523800 1111 ntBASIC6.31□□□□□ -1.4
USP39Q53GS9 AC084337.1-201ENST00000524809 686 ntBASIC6.31□□□□□ -1.4
USP39Q53GS9 AC078820.1-201ENST00000548702 742 ntTSL 3 BASIC6.31□□□□□ -1.4
USP39Q53GS9 AC025035.1-201ENST00000551571 894 ntTSL 2 BASIC6.31□□□□□ -1.4
USP39Q53GS9 AL133240.1-201ENST00000553537 580 ntTSL 4 BASIC6.31□□□□□ -1.4
USP39Q53GS9 GPATCH2L-203ENST00000553588 776 ntTSL 2 BASIC6.31□□□□□ -1.4
USP39Q53GS9 GLRXP2-201ENST00000555594 321 ntBASIC6.31□□□□□ -1.4
USP39Q53GS9 RNASE11-208ENST00000555841 886 ntAPPRIS P2 TSL 1 (best) BASIC6.31□□□□□ -1.4
USP39Q53GS9 AC009097.1-201ENST00000567077 406 ntTSL 3 BASIC6.31□□□□□ -1.4
USP39Q53GS9 AC109446.2-201ENST00000567872 497 ntBASIC6.31□□□□□ -1.4
USP39Q53GS9 MMP2-AS1-202ENST00000569037 553 ntTSL 5 BASIC6.31□□□□□ -1.4
USP39Q53GS9 AC087301.1-201ENST00000579037 321 ntTSL 3 BASIC6.31□□□□□ -1.4
USP39Q53GS9 MIR4443-201ENST00000585052 53 ntBASIC6.31□□□□□ -1.4
USP39Q53GS9 AC012370.2-201ENST00000597541 1080 ntTSL 5 BASIC6.31□□□□□ -1.4
USP39Q53GS9 Z99497.2-201ENST00000603634 310 ntBASIC6.31□□□□□ -1.4
USP39Q53GS9 AC135507.1-201ENST00000607214 561 ntBASIC6.31□□□□□ -1.4
USP39Q53GS9 AC008759.3-201ENST00000613300 508 ntBASIC6.31□□□□□ -1.4
USP39Q53GS9 AL139407.1-201ENST00000613826 1175 ntBASIC6.31□□□□□ -1.4
USP39Q53GS9 TCL6_3.1-201ENST00000619064 137 ntBASIC6.31□□□□□ -1.4
USP39Q53GS9 ADAMTS9-AS1-210ENST00000625328 699 ntTSL 5 BASIC6.31□□□□□ -1.4
USP39Q53GS9 CNIH1-201ENST00000216416 4793 ntAPPRIS P2 TSL 1 (best) BASIC6.31□□□□□ -1.4
USP39Q53GS9 KLHL4-201ENST00000373114 2445 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
USP39Q53GS9 LINC01920-201ENST00000441356 2528 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
USP39Q53GS9 AC034229.2-201ENST00000566945 2508 ntBASIC6.31□□□□□ -1.4
USP39Q53GS9 FOCAD-202ENST00000380249 6096 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
USP39Q53GS9 AL157831.2-201ENST00000564681 3095 ntBASIC6.31□□□□□ -1.4
USP39Q53GS9 PTER-202ENST00000378000 3777 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
USP39Q53GS9 AP000526.1-201ENST00000603308 1388 ntBASIC6.31□□□□□ -1.4
USP39Q53GS9 CCDC18-AS1-205ENST00000421202 2973 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
USP39Q53GS9 ODF2-205ENST00000393527 3653 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
USP39Q53GS9 PTPRB-210ENST00000551525 5291 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
USP39Q53GS9 ADAM7-204ENST00000520720 1870 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
USP39Q53GS9 GCSAML-201ENST00000366488 3820 ntAPPRIS P3 TSL 1 (best) BASIC6.3□□□□□ -1.4
USP39Q53GS9 AC105749.1-201ENST00000631338 2008 ntBASIC6.3□□□□□ -1.4
USP39Q53GS9 GHR-211ENST00000618088 4491 ntAPPRIS P1 TSL 5 BASIC6.3□□□□□ -1.4
USP39Q53GS9 PREPL-216ENST00000541738 6049 ntTSL 2 BASIC6.3□□□□□ -1.4
USP39Q53GS9 SSH2-201ENST00000269033 9327 ntAPPRIS P3 TSL 1 (best) BASIC6.3□□□□□ -1.4
USP39Q53GS9 GPM6A-201ENST00000280187 2854 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
USP39Q53GS9 SLC26A3-201ENST00000340010 2863 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
USP39Q53GS9 SCN1A-203ENST00000409050 5946 ntTSL 5 BASIC6.3□□□□□ -1.4
USP39Q53GS9 CFAP221-203ENST00000413369 2801 ntAPPRIS P1 TSL 5 BASIC6.3□□□□□ -1.4
Retrieved 100 of 98,524 protein–RNA pairs in 82.1 ms