Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 RPE65-201ENST00000262340 2610 ntAPPRIS P1 TSL 1 (best) BASIC6.47□□□□□ -1.37
RNF4P78317 AF131216.1-201ENST00000498997 5856 ntTSL 1 (best) BASIC6.47□□□□□ -1.37
RNF4P78317 SORBS2-230ENST00000448662 4356 ntTSL 2 BASIC6.47□□□□□ -1.37
RNF4P78317 GRXCR2-201ENST00000377976 2002 ntAPPRIS P1 TSL 2 BASIC6.47□□□□□ -1.37
RNF4P78317 DCAF13-210ENST00000618975 2038 ntTSL 2 BASIC6.47□□□□□ -1.37
RNF4P78317 THRB-IT1-201ENST00000425296 1754 ntTSL 2 BASIC6.47□□□□□ -1.37
RNF4P78317 MIER3-205ENST00000409421 2152 ntTSL 2 BASIC6.47□□□□□ -1.37
RNF4P78317 ZBTB21-205ENST00000398511 5608 ntAPPRIS P1 TSL 1 (best) BASIC6.47□□□□□ -1.37
RNF4P78317 CABS1-201ENST00000273936 1532 ntAPPRIS P1 TSL 1 (best) BASIC6.47□□□□□ -1.37
RNF4P78317 PSG2-202ENST00000406487 1538 ntAPPRIS P1 TSL 1 (best) BASIC6.47□□□□□ -1.37
RNF4P78317 AC132219.2-201ENST00000624416 2327 ntBASIC6.47□□□□□ -1.37
RNF4P78317 FOXJ3-203ENST00000372571 4468 ntTSL 2 BASIC6.47□□□□□ -1.37
RNF4P78317 BUB1-202ENST00000409311 3287 ntTSL 1 (best) BASIC6.47□□□□□ -1.37
RNF4P78317 MAPK10-357ENST00000641831 2858 ntBASIC6.47□□□□□ -1.37
RNF4P78317 MRRFP1-201ENST00000435941 1675 ntBASIC6.47□□□□□ -1.37
RNF4P78317 ZNF490-201ENST00000311437 4237 ntAPPRIS P1 TSL 1 (best) BASIC6.47□□□□□ -1.37
RNF4P78317 SPP2-201ENST00000168148 1024 ntAPPRIS P2 TSL 1 (best) BASIC6.47□□□□□ -1.37
RNF4P78317 RNU6-452P-201ENST00000384406 107 ntBASIC6.47□□□□□ -1.37
RNF4P78317 MIR187-201ENST00000385062 109 ntBASIC6.47□□□□□ -1.37
RNF4P78317 MT-TP-201ENST00000387461 68 ntBASIC6.47□□□□□ -1.37
RNF4P78317 TRAV27-201ENST00000390457 425 ntAPPRIS P1 BASIC6.47□□□□□ -1.37
RNF4P78317 RN7SKP232-201ENST00000410170 290 ntBASIC6.47□□□□□ -1.37
RNF4P78317 AF274855.1-201ENST00000411474 850 ntTSL 3 BASIC6.47□□□□□ -1.37
RNF4P78317 LINC01829-201ENST00000414404 571 ntTSL 2 BASIC6.47□□□□□ -1.37
RNF4P78317 NFIA-AS2-202ENST00000421455 768 ntTSL 4 BASIC6.47□□□□□ -1.37
RNF4P78317 AC066692.1-201ENST00000421721 457 ntBASIC6.47□□□□□ -1.37
RNF4P78317 CYP4F32P-201ENST00000426492 504 ntBASIC6.47□□□□□ -1.37
RNF4P78317 AC104651.1-201ENST00000427559 735 ntBASIC6.47□□□□□ -1.37
RNF4P78317 DPPA2P1-201ENST00000428060 556 ntBASIC6.47□□□□□ -1.37
RNF4P78317 MIR181A2HG-201ENST00000429139 662 ntTSL 2 BASIC6.47□□□□□ -1.37
RNF4P78317 MYL6P3-201ENST00000436904 432 ntBASIC6.47□□□□□ -1.37
RNF4P78317 AL354714.5-201ENST00000450131 590 ntBASIC6.47□□□□□ -1.37
RNF4P78317 SNRPGP9-201ENST00000456025 225 ntBASIC6.47□□□□□ -1.37
RNF4P78317 AL035443.1-201ENST00000456631 304 ntTSL 3 BASIC6.47□□□□□ -1.37
RNF4P78317 AL606519.1-201ENST00000458146 580 ntTSL 2 BASIC6.47□□□□□ -1.37
RNF4P78317 ARPP21-231ENST00000474696 572 ntTSL 2 BASIC6.47□□□□□ -1.37
RNF4P78317 AC072039.1-201ENST00000477611 581 ntBASIC6.47□□□□□ -1.37
RNF4P78317 PLS1-AS1-201ENST00000485338 346 ntTSL 3 BASIC6.47□□□□□ -1.37
RNF4P78317 AL079303.1-201ENST00000486611 463 ntBASIC6.47□□□□□ -1.37
RNF4P78317 BNIP3P41-201ENST00000503774 571 ntBASIC6.47□□□□□ -1.37
RNF4P78317 AC107208.1-201ENST00000508265 519 ntTSL 4 BASIC6.47□□□□□ -1.37
RNF4P78317 MTCYBP44-201ENST00000514835 823 ntBASIC6.47□□□□□ -1.37
RNF4P78317 AC096661.1-201ENST00000515870 822 ntBASIC6.47□□□□□ -1.37
RNF4P78317 MTND4LP18-201ENST00000526864 291 ntBASIC6.47□□□□□ -1.37
RNF4P78317 AC084816.1-202ENST00000536744 647 ntTSL 2 BASIC6.47□□□□□ -1.37
RNF4P78317 HPS5-207ENST00000537258 1275 ntTSL 5 BASIC6.47□□□□□ -1.37
RNF4P78317 AC068305.2-201ENST00000550567 1205 ntBASIC6.47□□□□□ -1.37
RNF4P78317 ELK3-206ENST00000552142 1242 ntTSL 5 BASIC6.47□□□□□ -1.37
RNF4P78317 ULK4P1-202ENST00000565174 503 ntBASIC6.47□□□□□ -1.37
RNF4P78317 AC018558.5-201ENST00000565840 952 ntBASIC6.47□□□□□ -1.37
RNF4P78317 AC008741.1-201ENST00000569456 510 ntTSL 3 BASIC6.47□□□□□ -1.37
RNF4P78317 AC074237.1-201ENST00000577674 471 ntTSL 3 BASIC6.47□□□□□ -1.37
RNF4P78317 MIR5010-201ENST00000582846 120 ntBASIC6.47□□□□□ -1.37
RNF4P78317 AC008507.1-201ENST00000587506 734 ntBASIC6.47□□□□□ -1.37
RNF4P78317 AC098847.2-201ENST00000588088 528 ntTSL 5 BASIC6.47□□□□□ -1.37
RNF4P78317 SIGLEC31P-201ENST00000594237 551 ntBASIC6.47□□□□□ -1.37
RNF4P78317 MTCYBP22-201ENST00000603788 447 ntBASIC6.47□□□□□ -1.37
RNF4P78317 FBXW7-AS1-201ENST00000605147 372 ntTSL 1 (best) BASIC6.47□□□□□ -1.37
RNF4P78317 AC092354.1-201ENST00000606057 376 ntBASIC6.47□□□□□ -1.37
RNF4P78317 TP53TG1_2.1-201ENST00000611226 182 ntBASIC6.47□□□□□ -1.37
RNF4P78317 AL136981.2-201ENST00000617319 734 ntBASIC6.47□□□□□ -1.37
RNF4P78317 AP005212.3-201ENST00000619964 528 ntBASIC6.47□□□□□ -1.37
RNF4P78317 AC135068.5-201ENST00000624197 983 ntBASIC6.47□□□□□ -1.37
RNF4P78317 AL157778.1-201ENST00000626665 729 ntTSL 3 BASIC6.47□□□□□ -1.37
RNF4P78317 CASC22-202ENST00000628396 802 ntTSL 5 BASIC6.47□□□□□ -1.37
RNF4P78317 ABL2-201ENST00000344730 6910 ntAPPRIS ALT2 TSL 1 (best) BASIC6.47□□□□□ -1.37
RNF4P78317 KIAA0391-203ENST00000534898 2611 ntAPPRIS P3 TSL 1 (best) BASIC6.47□□□□□ -1.37
RNF4P78317 AL031651.1-201ENST00000615357 1438 ntBASIC6.47□□□□□ -1.37
RNF4P78317 GART-204ENST00000381831 3490 ntAPPRIS P1 TSL 1 (best) BASIC6.47□□□□□ -1.37
RNF4P78317 AP000547.3-204ENST00000588548 2523 ntBASIC6.47□□□□□ -1.37
RNF4P78317 UNC13B-209ENST00000635942 14550 ntAPPRIS ALT2 TSL 5 BASIC6.47□□□□□ -1.37
RNF4P78317 ATP5BP1-201ENST00000411980 1574 ntBASIC6.47□□□□□ -1.37
RNF4P78317 LINC01772-201ENST00000457898 3245 ntTSL 2 BASIC6.47□□□□□ -1.37
RNF4P78317 OR4K13-202ENST00000641664 5980 ntAPPRIS P1 BASIC6.47□□□□□ -1.37
RNF4P78317 C11orf54-202ENST00000354421 1733 ntAPPRIS P1 TSL 1 (best) BASIC6.47□□□□□ -1.37
RNF4P78317 TEX14-203ENST00000389934 4927 ntAPPRIS P4 TSL 1 (best) BASIC6.47□□□□□ -1.37
RNF4P78317 SLC39A12-202ENST00000377371 2725 ntAPPRIS ALT1 TSL 1 (best) BASIC6.47□□□□□ -1.37
RNF4P78317 FAM13C-219ENST00000621119 3400 ntAPPRIS ALT2 TSL 5 BASIC6.47□□□□□ -1.37
RNF4P78317 BEST1-202ENST00000449131 4267 ntTSL 1 (best) BASIC6.47□□□□□ -1.37
RNF4P78317 GUCY1B2-203ENST00000493639 2871 ntTSL 1 (best) BASIC6.47□□□□□ -1.37
RNF4P78317 RRH-201ENST00000317735 1455 ntAPPRIS P1 TSL 1 (best) BASIC6.47□□□□□ -1.37
RNF4P78317 AL355488.1-201ENST00000449169 2611 ntTSL 1 (best) BASIC6.46□□□□□ -1.37
RNF4P78317 LINC01222-201ENST00000427439 1785 ntTSL 2 BASIC6.46□□□□□ -1.37
RNF4P78317 DOCK11-201ENST00000276202 6625 ntAPPRIS P2 TSL 1 (best) BASIC6.46□□□□□ -1.37
RNF4P78317 AC037459.2-201ENST00000514980 4076 ntTSL 2 BASIC6.46□□□□□ -1.37
RNF4P78317 PSMB2-202ENST00000621781 4217 ntTSL 1 (best) BASIC6.46□□□□□ -1.37
RNF4P78317 NBPF9-205ENST00000613595 4527 ntTSL 1 (best) BASIC6.46□□□□□ -1.37
RNF4P78317 SYT4-201ENST00000255224 4110 ntAPPRIS P1 TSL 1 (best) BASIC6.46□□□□□ -1.37
RNF4P78317 CYP4Z2P-201ENST00000423332 1512 ntBASIC6.46□□□□□ -1.37
RNF4P78317 AC102941.1-201ENST00000567616 1537 ntBASIC6.46□□□□□ -1.37
RNF4P78317 AC129502.1-201ENST00000623261 1654 ntBASIC6.46□□□□□ -1.37
RNF4P78317 MCTP2-208ENST00000557742 1957 ntTSL 1 (best) BASIC6.46□□□□□ -1.37
RNF4P78317 ALMS1-IT1-201ENST00000441587 2107 ntTSL 1 (best) BASIC6.46□□□□□ -1.37
RNF4P78317 SORT1-209ENST00000538502 6993 ntTSL 2 BASIC6.46□□□□□ -1.38
RNF4P78317 INTS2-202ENST00000444766 5878 ntTSL 1 (best) BASIC6.46□□□□□ -1.38
RNF4P78317 XIAP-205ENST00000434753 8415 ntAPPRIS P1 TSL 1 (best) BASIC6.46□□□□□ -1.38
RNF4P78317 MGP-201ENST00000228938 694 ntTSL 3 BASIC6.46□□□□□ -1.38
RNF4P78317 NTS-201ENST00000256010 1237 ntAPPRIS P1 TSL 1 (best) BASIC6.46□□□□□ -1.38
RNF4P78317 OR2G3-201ENST00000320002 930 ntAPPRIS P1 BASIC6.46□□□□□ -1.38
RNF4P78317 SLC17A8-201ENST00000323346 3983 ntAPPRIS P1 TSL 1 (best) BASIC6.46□□□□□ -1.38
Retrieved 100 of 98,524 protein–RNA pairs in 70.5 ms