Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 SATB1-AS1-243ENST00000627546 589 ntTSL 5 BASIC6.33□□□□□ -1.4
CIITAP33076 UNC5C-205ENST00000610318 9403 ntTSL 5 BASIC6.33□□□□□ -1.4
CIITAP33076 SLC1A2-203ENST00000395753 11689 ntAPPRIS ALT1 TSL 2 BASIC6.33□□□□□ -1.4
CIITAP33076 TGFBR1-208ENST00000550253 1538 ntTSL 2 BASIC6.33□□□□□ -1.4
CIITAP33076 ERP27-201ENST00000266397 2096 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
CIITAP33076 ARHGAP5-210ENST00000556611 4824 ntAPPRIS ALT1 TSL 5 BASIC6.33□□□□□ -1.4
CIITAP33076 AL050403.1-201ENST00000448859 2006 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
CIITAP33076 PARD3B-214ENST00000622699 7442 ntTSL 5 BASIC6.33□□□□□ -1.4
CIITAP33076 AC127164.1-201ENST00000548738 4196 ntTSL 2 BASIC6.33□□□□□ -1.4
CIITAP33076 HEATR1-203ENST00000366582 8447 ntAPPRIS P1 TSL 5 BASIC6.33□□□□□ -1.4
CIITAP33076 DOCK4-AS1-201ENST00000452714 2494 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
CIITAP33076 KCNJ16-202ENST00000392670 4009 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
CIITAP33076 DLGAP5-202ENST00000395425 2954 ntAPPRIS ALT2 TSL 1 (best) BASIC6.33□□□□□ -1.4
CIITAP33076 AC087516.1-201ENST00000561236 2428 ntBASIC6.33□□□□□ -1.4
CIITAP33076 PTBP3-207ENST00000458258 7995 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
CIITAP33076 ST7-204ENST00000393444 2113 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
CIITAP33076 MEPE-202ENST00000395102 2123 ntAPPRIS ALT2 TSL 5 BASIC6.32□□□□□ -1.4
CIITAP33076 NDUFA5-207ENST00000471770 5608 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
CIITAP33076 MTCO1P22-201ENST00000604619 1360 ntBASIC6.32□□□□□ -1.4
CIITAP33076 PIAS2-204ENST00000585916 11075 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
CIITAP33076 TEX41-210ENST00000451774 2098 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
CIITAP33076 MECOM-202ENST00000433243 3508 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
CIITAP33076 UGT2B24P-201ENST00000514441 1597 ntBASIC6.32□□□□□ -1.4
CIITAP33076 PRLR-203ENST00000348262 1339 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
CIITAP33076 PLCH1-AS1-201ENST00000475196 1308 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
CIITAP33076 AL359313.1-201ENST00000447311 2293 ntTSL 2 BASIC6.32□□□□□ -1.4
CIITAP33076 KDM4C-214ENST00000536108 3406 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
CIITAP33076 RIC3-202ENST00000335425 5223 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
CIITAP33076 BCL2A1-201ENST00000267953 1033 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
CIITAP33076 AC011754.1-201ENST00000415201 491 ntTSL 5 BASIC6.32□□□□□ -1.4
CIITAP33076 AL513325.1-201ENST00000417716 1034 ntBASIC6.32□□□□□ -1.4
CIITAP33076 HSFY1P1-201ENST00000423928 1178 ntBASIC6.32□□□□□ -1.4
CIITAP33076 AC012075.1-201ENST00000436549 580 ntBASIC6.32□□□□□ -1.4
CIITAP33076 USP12-AS1-201ENST00000440657 268 ntTSL 5 BASIC6.32□□□□□ -1.4
CIITAP33076 PCBP1-AS1-232ENST00000442040 1111 ntTSL 3 BASIC6.32□□□□□ -1.4
CIITAP33076 AC007370.1-201ENST00000503163 316 ntTSL 2 BASIC6.32□□□□□ -1.4
CIITAP33076 CENPK-210ENST00000510354 1124 ntTSL 5 BASIC6.32□□□□□ -1.4
CIITAP33076 LINC01365-202ENST00000512219 637 ntTSL 5 BASIC6.32□□□□□ -1.4
CIITAP33076 AC098829.1-202ENST00000513384 537 ntTSL 3 BASIC6.32□□□□□ -1.4
CIITAP33076 TRDV3-201ENST00000535880 425 ntAPPRIS P1 BASIC6.32□□□□□ -1.4
CIITAP33076 LINC00933-205ENST00000560917 449 ntTSL 3 BASIC6.32□□□□□ -1.4
CIITAP33076 AC103808.4-201ENST00000577258 391 ntTSL 3 BASIC6.32□□□□□ -1.4
CIITAP33076 AP000919.3-201ENST00000582591 568 ntTSL 3 BASIC6.32□□□□□ -1.4
CIITAP33076 H3F3BP2-201ENST00000583907 357 ntBASIC6.32□□□□□ -1.4
CIITAP33076 AC091059.1-201ENST00000585190 215 ntTSL 3 BASIC6.32□□□□□ -1.4
CIITAP33076 GMCL1P2-201ENST00000605230 823 ntBASIC6.32□□□□□ -1.4
CIITAP33076 AL160400.1-201ENST00000606385 1030 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
CIITAP33076 MIR6729-201ENST00000618194 65 ntBASIC6.32□□□□□ -1.4
CIITAP33076 LINC01320-210ENST00000626008 929 ntTSL 5 BASIC6.32□□□□□ -1.4
CIITAP33076 AP000550.3-201ENST00000637734 379 ntBASIC6.32□□□□□ -1.4
CIITAP33076 SELE-204ENST00000367776 3576 ntTSL 5 BASIC6.32□□□□□ -1.4
CIITAP33076 SELE-205ENST00000367777 3576 ntTSL 5 BASIC6.32□□□□□ -1.4
CIITAP33076 ZNF782-208ENST00000535338 3296 ntAPPRIS P1 TSL 3 BASIC6.32□□□□□ -1.4
CIITAP33076 AFF2-201ENST00000286437 12280 ntTSL 2 BASIC6.32□□□□□ -1.4
CIITAP33076 AADAT-202ENST00000353187 2101 ntAPPRIS P3 TSL 2 BASIC6.32□□□□□ -1.4
CIITAP33076 NBPF19-201ENST00000369227 3670 ntTSL 5 BASIC6.32□□□□□ -1.4
CIITAP33076 NBPF20-203ENST00000594479 3670 ntTSL 5 BASIC6.32□□□□□ -1.4
CIITAP33076 NBPF14-210ENST00000621066 3670 ntTSL 5 BASIC6.32□□□□□ -1.4
CIITAP33076 ARHGAP20-204ENST00000528829 5880 ntAPPRIS ALT2 TSL 1 (best) BASIC6.32□□□□□ -1.4
CIITAP33076 CASC15-206ENST00000606851 1889 ntTSL 2 BASIC6.32□□□□□ -1.4
CIITAP33076 OR4F13P-202ENST00000560066 2054 ntBASIC6.32□□□□□ -1.4
CIITAP33076 AL136985.3-202ENST00000636386 2708 ntTSL 5 BASIC6.32□□□□□ -1.4
CIITAP33076 MKI67-201ENST00000368653 11417 ntAPPRIS ALT2 TSL 2 BASIC6.32□□□□□ -1.4
CIITAP33076 AL513550.1-201ENST00000418945 1638 ntTSL 2 BASIC6.32□□□□□ -1.4
CIITAP33076 CHST9-203ENST00000618847 11388 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
CIITAP33076 ALB-220ENST00000621628 1606 ntTSL 5 BASIC6.32□□□□□ -1.4
CIITAP33076 AC015799.1-201ENST00000622996 3122 ntBASIC6.32□□□□□ -1.4
CIITAP33076 GTDC1-207ENST00000409298 2209 ntTSL 5 BASIC6.31□□□□□ -1.4
CIITAP33076 VRK2-206ENST00000435505 2446 ntAPPRIS P3 TSL 1 (best) BASIC6.31□□□□□ -1.4
CIITAP33076 AC024341.1-201ENST00000526444 1552 ntBASIC6.31□□□□□ -1.4
CIITAP33076 SLC38A9-218ENST00000512595 1756 ntTSL 2 BASIC6.31□□□□□ -1.4
CIITAP33076 SERPINB7-207ENST00000546027 1951 ntAPPRIS P1 TSL 2 BASIC6.31□□□□□ -1.4
CIITAP33076 KIN-201ENST00000379562 6348 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
CIITAP33076 LINC01630-202ENST00000578152 3188 ntTSL 2 BASIC6.31□□□□□ -1.4
CIITAP33076 PCLO-201ENST00000333891 20329 ntAPPRIS P1 TSL 2 BASIC6.31□□□□□ -1.4
CIITAP33076 PRRC1-201ENST00000296666 4699 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
CIITAP33076 FRMD7-202ENST00000370879 2864 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
CIITAP33076 FILIP1L-201ENST00000331335 4219 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
CIITAP33076 RN7SKP28-201ENST00000364770 305 ntBASIC6.31□□□□□ -1.4
CIITAP33076 RNU4-2-201ENST00000365668 141 ntBASIC6.31□□□□□ -1.4
CIITAP33076 OR2B3-201ENST00000377173 1106 ntAPPRIS P1 BASIC6.31□□□□□ -1.4
CIITAP33076 AC007068.1-201ENST00000396690 844 ntBASIC6.31□□□□□ -1.4
CIITAP33076 AC016994.1-201ENST00000425419 552 ntTSL 4 BASIC6.31□□□□□ -1.4
CIITAP33076 AL390879.2-203ENST00000426943 1121 ntBASIC6.31□□□□□ -1.4
CIITAP33076 C21orf91-OT1-203ENST00000439392 497 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
CIITAP33076 AL035416.1-201ENST00000443012 767 ntTSL 2 BASIC6.31□□□□□ -1.4
CIITAP33076 CYCSP51-201ENST00000443545 318 ntBASIC6.31□□□□□ -1.4
CIITAP33076 RPS23P9-201ENST00000448848 438 ntBASIC6.31□□□□□ -1.4
CIITAP33076 snoU13.29-201ENST00000459370 104 ntBASIC6.31□□□□□ -1.4
CIITAP33076 AC135457.1-201ENST00000503553 664 ntTSL 3 BASIC6.31□□□□□ -1.4
CIITAP33076 FOXD1-AS1-201ENST00000514661 424 ntTSL 3 BASIC6.31□□□□□ -1.4
CIITAP33076 RNA5SP362-201ENST00000516048 118 ntBASIC6.31□□□□□ -1.4
CIITAP33076 AC012613.1-201ENST00000522685 387 ntTSL 2 BASIC6.31□□□□□ -1.4
CIITAP33076 PIH1D2-208ENST00000532211 1103 ntAPPRIS P1 TSL 5 BASIC6.31□□□□□ -1.4
CIITAP33076 AP002754.2-201ENST00000542121 462 ntTSL 5 BASIC6.31□□□□□ -1.4
CIITAP33076 MORF4L1-205ENST00000558502 855 ntTSL 3 BASIC6.31□□□□□ -1.4
CIITAP33076 LINC02129-201ENST00000564381 692 ntTSL 5 BASIC6.31□□□□□ -1.4
CIITAP33076 ULK4P1-201ENST00000564495 875 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
CIITAP33076 ULK4P2-204ENST00000569682 798 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
CIITAP33076 MIR4420-201ENST00000583944 77 ntBASIC6.31□□□□□ -1.4
Retrieved 100 of 98,524 protein–RNA pairs in 112.2 ms