Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 CTAGE5-217ENST00000557038 2869 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
HOXD4P09016 CHMP1B2P-202ENST00000614414 6813 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
HOXD4P09016 IBTK-206ENST00000503631 3560 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
HOXD4P09016 WAC-209ENST00000428935 1320 ntTSL 2 BASIC5.2□□□□□ -1.58
HOXD4P09016 AC117409.1-201ENST00000470499 1310 ntBASIC5.2□□□□□ -1.58
HOXD4P09016 TCP1P3-201ENST00000414406 1498 ntBASIC5.2□□□□□ -1.58
HOXD4P09016 PRDM2-206ENST00000413440 6175 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
HOXD4P09016 ADAM29-203ENST00000445694 3244 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
HOXD4P09016 ARHGAP28-205ENST00000531294 2171 ntAPPRIS ALT2 TSL 5 BASIC5.19□□□□□ -1.58
HOXD4P09016 AFP-201ENST00000226359 1914 ntTSL 5 BASIC5.19□□□□□ -1.58
HOXD4P09016 AC087473.1-201ENST00000561320 2471 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
HOXD4P09016 NUCB2-220ENST00000622082 1369 ntAPPRIS P2 TSL 5 BASIC5.19□□□□□ -1.58
HOXD4P09016 ASB14-201ENST00000389601 3175 ntAPPRIS ALT2 TSL 5 BASIC5.19□□□□□ -1.58
HOXD4P09016 AL161756.3-201ENST00000641216 2071 ntBASIC5.19□□□□□ -1.58
HOXD4P09016 AC104260.2-201ENST00000623551 3497 ntBASIC5.19□□□□□ -1.58
HOXD4P09016 RNF20-202ENST00000389120 3940 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
HOXD4P09016 SV2B-201ENST00000330276 11202 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
HOXD4P09016 LMO3-209ENST00000447609 3365 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
HOXD4P09016 EPB41L2-226ENST00000530757 4360 ntTSL 2 BASIC5.19□□□□□ -1.58
HOXD4P09016 IFNA10-201ENST00000357374 963 ntAPPRIS P1 BASIC5.19□□□□□ -1.58
HOXD4P09016 SNORA58B-201ENST00000364259 136 ntBASIC5.19□□□□□ -1.58
HOXD4P09016 ARGLU1-202ENST00000375926 821 ntAPPRIS P1 TSL 5 BASIC5.19□□□□□ -1.58
HOXD4P09016 C6orf48-208ENST00000395788 815 ntAPPRIS P1 TSL 2 BASIC5.19□□□□□ -1.58
HOXD4P09016 AC012499.1-201ENST00000412133 741 ntTSL 5 BASIC5.19□□□□□ -1.58
HOXD4P09016 AL162400.1-201ENST00000418091 359 ntTSL 5 BASIC5.19□□□□□ -1.58
HOXD4P09016 AL139008.2-201ENST00000420315 395 ntTSL 3 BASIC5.19□□□□□ -1.58
HOXD4P09016 TNPO1P1-201ENST00000423641 1138 ntBASIC5.19□□□□□ -1.58
HOXD4P09016 AL353804.1-201ENST00000444482 451 ntTSL 5 BASIC5.19□□□□□ -1.58
HOXD4P09016 RN7SL610P-201ENST00000463845 291 ntBASIC5.19□□□□□ -1.58
HOXD4P09016 RN7SL515P-201ENST00000463999 297 ntBASIC5.19□□□□□ -1.58
HOXD4P09016 AL133445.1-201ENST00000467051 452 ntBASIC5.19□□□□□ -1.58
HOXD4P09016 AC007688.1-201ENST00000475592 759 ntBASIC5.19□□□□□ -1.58
HOXD4P09016 RPS3AP15-201ENST00000483874 781 ntBASIC5.19□□□□□ -1.58
HOXD4P09016 LINC00518-204ENST00000491317 1228 ntTSL 2 BASIC5.19□□□□□ -1.58
HOXD4P09016 RPSAP51-201ENST00000497462 645 ntBASIC5.19□□□□□ -1.58
HOXD4P09016 AC091435.2-201ENST00000514586 565 ntTSL 4 BASIC5.19□□□□□ -1.58
HOXD4P09016 AC021678.3-201ENST00000517893 476 ntBASIC5.19□□□□□ -1.58
HOXD4P09016 AC008676.3-201ENST00000521237 435 ntBASIC5.19□□□□□ -1.58
HOXD4P09016 AC026992.1-201ENST00000558269 571 ntTSL 2 BASIC5.19□□□□□ -1.58
HOXD4P09016 AC007346.2-201ENST00000564816 892 ntBASIC5.19□□□□□ -1.58
HOXD4P09016 AL163952.1-202ENST00000569625 600 ntBASIC5.19□□□□□ -1.58
HOXD4P09016 AC012588.1-201ENST00000583852 358 ntTSL 3 BASIC5.19□□□□□ -1.58
HOXD4P09016 AL136311.1-213ENST00000586466 520 ntTSL 5 BASIC5.19□□□□□ -1.58
HOXD4P09016 AC005229.3-201ENST00000603438 323 ntBASIC5.19□□□□□ -1.58
HOXD4P09016 AC015849.6-201ENST00000605454 474 ntBASIC5.19□□□□□ -1.58
HOXD4P09016 AC245041.2-202ENST00000613389 493 ntTSL 5 BASIC5.19□□□□□ -1.58
HOXD4P09016 AL355974.3-201ENST00000617383 467 ntBASIC5.19□□□□□ -1.58
HOXD4P09016 HOTTIP_3.1-201ENST00000619957 337 ntBASIC5.19□□□□□ -1.58
HOXD4P09016 AJ239318.1-201ENST00000624445 607 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
HOXD4P09016 PCBP1-AS1-286ENST00000625888 765 ntTSL 5 BASIC5.19□□□□□ -1.58
HOXD4P09016 CFTRP2-201ENST00000634304 199 ntBASIC5.19□□□□□ -1.58
HOXD4P09016 AC138627.1-204ENST00000641894 765 ntBASIC5.19□□□□□ -1.58
HOXD4P09016 ZNF891-201ENST00000537226 15455 ntAPPRIS P1 TSL 2 BASIC5.19□□□□□ -1.58
HOXD4P09016 RASGRP1-203ENST00000450598 2296 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
HOXD4P09016 KLHL28-201ENST00000355081 2177 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
HOXD4P09016 CDON-206ENST00000531738 5803 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
HOXD4P09016 C6orf163-202ENST00000388923 1308 ntAPPRIS P1 TSL 5 BASIC5.19□□□□□ -1.58
HOXD4P09016 NOSTRIN-206ENST00000444448 2537 ntTSL 5 BASIC5.19□□□□□ -1.58
HOXD4P09016 LINC00309-201ENST00000431020 3307 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
HOXD4P09016 ZNF611-201ENST00000319783 3153 ntAPPRIS P1 TSL 2 BASIC5.18□□□□□ -1.58
HOXD4P09016 LRRC49-223ENST00000560369 2586 ntAPPRIS ALT1 TSL 2 BASIC5.18□□□□□ -1.58
HOXD4P09016 DOCK10-202ENST00000409592 7288 ntAPPRIS ALT2 TSL 1 (best) BASIC5.18□□□□□ -1.58
HOXD4P09016 ICE2P1-201ENST00000512800 1849 ntBASIC5.18□□□□□ -1.58
HOXD4P09016 PEX5L-202ENST00000392649 8540 ntAPPRIS ALT2 TSL 5 BASIC5.18□□□□□ -1.58
HOXD4P09016 CDY11P-201ENST00000447168 1651 ntBASIC5.18□□□□□ -1.58
HOXD4P09016 AC007342.9-201ENST00000623877 1385 ntBASIC5.18□□□□□ -1.58
HOXD4P09016 ZNF615-213ENST00000602063 4094 ntAPPRIS P3 TSL 5 BASIC5.18□□□□□ -1.58
HOXD4P09016 CLUL1-205ENST00000579494 1742 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
HOXD4P09016 NXT2-201ENST00000218004 2692 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
HOXD4P09016 CD200R1L-204ENST00000488794 1597 ntAPPRIS ALT2 TSL 5 BASIC5.18□□□□□ -1.58
HOXD4P09016 ESRRG-204ENST00000361525 5363 ntAPPRIS P1 TSL 5 BASIC5.18□□□□□ -1.58
HOXD4P09016 DENND4A-201ENST00000431932 5875 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
HOXD4P09016 OR5B17-201ENST00000357377 946 ntAPPRIS P1 BASIC5.18□□□□□ -1.58
HOXD4P09016 RNU1-19P-201ENST00000363306 165 ntBASIC5.18□□□□□ -1.58
HOXD4P09016 RN7SKP124-201ENST00000364730 341 ntBASIC5.18□□□□□ -1.58
HOXD4P09016 IGKV5-2-201ENST00000390244 408 ntAPPRIS P1 BASIC5.18□□□□□ -1.58
HOXD4P09016 AL050305.1-201ENST00000399993 1230 ntBASIC5.18□□□□□ -1.58
HOXD4P09016 SNORA81-201ENST00000408493 178 ntBASIC5.18□□□□□ -1.58
HOXD4P09016 RNU4-34P-201ENST00000410431 124 ntBASIC5.18□□□□□ -1.58
HOXD4P09016 AL662874.1-201ENST00000426065 230 ntBASIC5.18□□□□□ -1.58
HOXD4P09016 MAGI2-AS3-204ENST00000426835 738 ntTSL 3 BASIC5.18□□□□□ -1.58
HOXD4P09016 SPRR2F-201ENST00000468739 681 ntAPPRIS P1 TSL 3 BASIC5.18□□□□□ -1.58
HOXD4P09016 AC087672.1-201ENST00000479876 766 ntBASIC5.18□□□□□ -1.58
HOXD4P09016 AC106894.1-201ENST00000511735 451 ntTSL 5 BASIC5.18□□□□□ -1.58
HOXD4P09016 LNX1-AS1-204ENST00000514364 495 ntTSL 3 BASIC5.18□□□□□ -1.58
HOXD4P09016 ST3GAL3-233ENST00000531816 344 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
HOXD4P09016 LINC02327-205ENST00000550990 472 ntTSL 3 BASIC5.18□□□□□ -1.58
HOXD4P09016 AC126615.2-201ENST00000553003 515 ntBASIC5.18□□□□□ -1.58
HOXD4P09016 AC009396.2-201ENST00000555954 700 ntTSL 3 BASIC5.18□□□□□ -1.58
HOXD4P09016 AL049779.3-201ENST00000557141 606 ntBASIC5.18□□□□□ -1.58
HOXD4P09016 LINC02345-203ENST00000558897 405 ntTSL 3 BASIC5.18□□□□□ -1.58
HOXD4P09016 AC087477.5-202ENST00000560242 389 ntTSL 3 BASIC5.18□□□□□ -1.58
HOXD4P09016 AC055874.1-201ENST00000561458 479 ntTSL 2 BASIC5.18□□□□□ -1.58
HOXD4P09016 PWRN1-204ENST00000565241 480 ntTSL 2 BASIC5.18□□□□□ -1.58
HOXD4P09016 AC011451.1-201ENST00000591336 405 ntTSL 3 BASIC5.18□□□□□ -1.58
HOXD4P09016 uc_338.26-201ENST00000612659 160 ntBASIC5.18□□□□□ -1.58
HOXD4P09016 AC008115.3-201ENST00000614874 549 ntBASIC5.18□□□□□ -1.58
HOXD4P09016 TADA2A-212ENST00000620367 1043 ntTSL 5 BASIC5.18□□□□□ -1.58
HOXD4P09016 AL390318.1-201ENST00000624564 687 ntBASIC5.18□□□□□ -1.58
HOXD4P09016 PLCXD3-201ENST00000328457 7538 ntAPPRIS P1 TSL 5 BASIC5.18□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 74.6 ms