Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 CASP1-208ENST00000527979 1521 ntTSL 5 BASIC5.38□□□□□ -1.55
CCDC28BQ9BUN5 ZNF682-201ENST00000358523 2161 ntTSL 2 BASIC5.38□□□□□ -1.55
CCDC28BQ9BUN5 MT-RNR2-201ENST00000387347 1559 ntBASIC5.38□□□□□ -1.55
CCDC28BQ9BUN5 AC022306.1-201ENST00000560489 1562 ntBASIC5.38□□□□□ -1.55
CCDC28BQ9BUN5 LINC01553-203ENST00000521074 4329 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
CCDC28BQ9BUN5 BBX-204ENST00000406780 3674 ntAPPRIS P3 TSL 5 BASIC5.37□□□□□ -1.55
CCDC28BQ9BUN5 CASC19-201ENST00000500112 5735 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
CCDC28BQ9BUN5 SLC26A7-201ENST00000276609 5263 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
CCDC28BQ9BUN5 RASSF6-204ENST00000395777 2735 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
CCDC28BQ9BUN5 RNFT1P3-201ENST00000340898 1052 ntBASIC5.37□□□□□ -1.55
CCDC28BQ9BUN5 RNU6-249P-201ENST00000363016 102 ntBASIC5.37□□□□□ -1.55
CCDC28BQ9BUN5 RNA5SP500-201ENST00000364486 119 ntBASIC5.37□□□□□ -1.55
CCDC28BQ9BUN5 CDC123-202ENST00000378900 933 ntTSL 5 BASIC5.37□□□□□ -1.55
CCDC28BQ9BUN5 RN7SKP38-201ENST00000410782 309 ntBASIC5.37□□□□□ -1.55
CCDC28BQ9BUN5 AC004882.2-201ENST00000420180 244 ntTSL 5 BASIC5.37□□□□□ -1.55
CCDC28BQ9BUN5 AC007161.1-204ENST00000423039 460 ntBASIC5.37□□□□□ -1.55
CCDC28BQ9BUN5 ANAPC1P1-201ENST00000426186 2145 ntBASIC5.37□□□□□ -1.55
CCDC28BQ9BUN5 CYP1B1-AS1-202ENST00000427168 484 ntTSL 4 BASIC5.37□□□□□ -1.55
CCDC28BQ9BUN5 AC024601.1-201ENST00000427247 524 ntTSL 3 BASIC5.37□□□□□ -1.55
CCDC28BQ9BUN5 NPM1P22-201ENST00000427761 952 ntBASIC5.37□□□□□ -1.55
CCDC28BQ9BUN5 AC004990.1-201ENST00000431722 564 ntTSL 4 BASIC5.37□□□□□ -1.55
CCDC28BQ9BUN5 AL389925.1-201ENST00000432257 728 ntBASIC5.37□□□□□ -1.55
CCDC28BQ9BUN5 RPL19P16-201ENST00000433839 588 ntBASIC5.37□□□□□ -1.55
CCDC28BQ9BUN5 TBX18-AS1-202ENST00000441863 382 ntTSL 2 BASIC5.37□□□□□ -1.55
CCDC28BQ9BUN5 MTCO3P17-201ENST00000443775 513 ntBASIC5.37□□□□□ -1.55
CCDC28BQ9BUN5 RPL5P7-201ENST00000444235 813 ntBASIC5.37□□□□□ -1.55
CCDC28BQ9BUN5 LINC01370-202ENST00000445606 731 ntTSL 5 BASIC5.37□□□□□ -1.55
CCDC28BQ9BUN5 AC007383.1-201ENST00000445875 636 ntBASIC5.37□□□□□ -1.55
CCDC28BQ9BUN5 LINC00189-203ENST00000447125 783 ntTSL 3 BASIC5.37□□□□□ -1.55
CCDC28BQ9BUN5 AC004890.1-201ENST00000461005 181 ntBASIC5.37□□□□□ -1.55
CCDC28BQ9BUN5 FCRL2-205ENST00000469986 902 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
CCDC28BQ9BUN5 GSTM1-206ENST00000483399 512 ntTSL 3 BASIC5.37□□□□□ -1.55
CCDC28BQ9BUN5 KDELR2-206ENST00000490996 655 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
CCDC28BQ9BUN5 IGBP1P4-201ENST00000503202 879 ntBASIC5.37□□□□□ -1.55
CCDC28BQ9BUN5 IMPA1P1-201ENST00000510718 842 ntBASIC5.37□□□□□ -1.55
CCDC28BQ9BUN5 EIF3KP3-201ENST00000514461 639 ntBASIC5.37□□□□□ -1.55
CCDC28BQ9BUN5 AC069272.1-201ENST00000514843 680 ntTSL 3 BASIC5.37□□□□□ -1.55
CCDC28BQ9BUN5 AC025370.1-201ENST00000523775 583 ntTSL 5 BASIC5.37□□□□□ -1.55
CCDC28BQ9BUN5 HMGN2P36-201ENST00000529541 409 ntBASIC5.37□□□□□ -1.55
CCDC28BQ9BUN5 AC027369.5-201ENST00000533838 755 ntBASIC5.37□□□□□ -1.55
CCDC28BQ9BUN5 ACYP1-204ENST00000555135 639 ntTSL 3 BASIC5.37□□□□□ -1.55
CCDC28BQ9BUN5 FRMD6-AS2-201ENST00000556617 548 ntTSL 4 BASIC5.37□□□□□ -1.55
CCDC28BQ9BUN5 AC002519.2-203ENST00000567043 837 ntBASIC5.37□□□□□ -1.55
CCDC28BQ9BUN5 AC046158.2-201ENST00000568764 707 ntTSL 3 BASIC5.37□□□□□ -1.55
CCDC28BQ9BUN5 AC091132.1-201ENST00000588189 547 ntTSL 5 BASIC5.37□□□□□ -1.55
CCDC28BQ9BUN5 AC108673.3-201ENST00000609183 335 ntBASIC5.37□□□□□ -1.55
CCDC28BQ9BUN5 AC104836.2-201ENST00000609675 1293 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
CCDC28BQ9BUN5 MIR6793-201ENST00000612376 63 ntBASIC5.37□□□□□ -1.55
CCDC28BQ9BUN5 DNAJC10-209ENST00000613960 1010 ntTSL 5 BASIC5.37□□□□□ -1.55
CCDC28BQ9BUN5 Metazoa_SRP.43-201ENST00000616394 271 ntBASIC5.37□□□□□ -1.55
CCDC28BQ9BUN5 MIR6823-201ENST00000622118 61 ntBASIC5.37□□□□□ -1.55
CCDC28BQ9BUN5 MAPKBP1-217ENST00000627631 210 ntTSL 5 BASIC5.37□□□□□ -1.55
CCDC28BQ9BUN5 AC099654.6-201ENST00000636487 512 ntBASIC5.37□□□□□ -1.55
CCDC28BQ9BUN5 C5orf51-204ENST00000612065 1391 ntTSL 5 BASIC5.37□□□□□ -1.55
CCDC28BQ9BUN5 FOXN2-203ENST00000616844 1414 ntTSL 5 BASIC5.37□□□□□ -1.55
CCDC28BQ9BUN5 RFC3-202ENST00000434425 1461 ntTSL 5 BASIC5.37□□□□□ -1.55
CCDC28BQ9BUN5 AP002512.4-201ENST00000641310 4672 ntAPPRIS P1 BASIC5.37□□□□□ -1.55
CCDC28BQ9BUN5 APAF1-209ENST00000550527 6581 ntAPPRIS ALT1 TSL 1 (best) BASIC5.37□□□□□ -1.55
CCDC28BQ9BUN5 DNAH7-202ENST00000409063 1845 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
CCDC28BQ9BUN5 SLC15A2-201ENST00000295605 2379 ntTSL 2 BASIC5.36□□□□□ -1.55
CCDC28BQ9BUN5 HMCN1-201ENST00000271588 18208 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
CCDC28BQ9BUN5 AP3B1-204ENST00000519295 3986 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
CCDC28BQ9BUN5 ATP13A4-203ENST00000392443 4016 ntTSL 5 BASIC5.36□□□□□ -1.55
CCDC28BQ9BUN5 CCNB3-201ENST00000276014 4513 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
CCDC28BQ9BUN5 CACNB4-221ENST00000636130 7748 ntTSL 5 BASIC5.36□□□□□ -1.55
CCDC28BQ9BUN5 TBCK-205ENST00000432496 3362 ntAPPRIS P1 TSL 2 BASIC5.36□□□□□ -1.55
CCDC28BQ9BUN5 AC092821.1-204ENST00000518709 3552 ntTSL 5 BASIC5.36□□□□□ -1.55
CCDC28BQ9BUN5 RNU6-167P-201ENST00000384292 106 ntBASIC5.36□□□□□ -1.55
CCDC28BQ9BUN5 TFPI-204ENST00000409676 1119 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
CCDC28BQ9BUN5 AC002524.1-201ENST00000411687 547 ntBASIC5.36□□□□□ -1.55
CCDC28BQ9BUN5 LINC00342-201ENST00000412393 654 ntTSL 3 BASIC5.36□□□□□ -1.55
CCDC28BQ9BUN5 RPSAP35-201ENST00000413753 818 ntBASIC5.36□□□□□ -1.55
CCDC28BQ9BUN5 AC007738.1-201ENST00000413892 348 ntBASIC5.36□□□□□ -1.55
CCDC28BQ9BUN5 BX284632.2-201ENST00000421091 399 ntBASIC5.36□□□□□ -1.55
CCDC28BQ9BUN5 IL23R-203ENST00000425614 1295 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
CCDC28BQ9BUN5 AL354714.4-201ENST00000427339 575 ntTSL 3 BASIC5.36□□□□□ -1.55
CCDC28BQ9BUN5 MTND6P12-201ENST00000428247 522 ntBASIC5.36□□□□□ -1.55
CCDC28BQ9BUN5 AC126120.1-201ENST00000431082 470 ntBASIC5.36□□□□□ -1.55
CCDC28BQ9BUN5 GAPDHP59-201ENST00000435908 267 ntBASIC5.36□□□□□ -1.55
CCDC28BQ9BUN5 LINC02384-202ENST00000441255 567 ntTSL 4 BASIC5.36□□□□□ -1.55
CCDC28BQ9BUN5 AL512605.1-202ENST00000441919 381 ntBASIC5.36□□□□□ -1.55
CCDC28BQ9BUN5 AL392089.1-202ENST00000444793 449 ntTSL 2 BASIC5.36□□□□□ -1.55
CCDC28BQ9BUN5 CYCSP24-201ENST00000445119 316 ntBASIC5.36□□□□□ -1.55
CCDC28BQ9BUN5 AL359955.2-201ENST00000445380 353 ntBASIC5.36□□□□□ -1.55
CCDC28BQ9BUN5 MOB4-207ENST00000448447 1021 ntTSL 2 BASIC5.36□□□□□ -1.55
CCDC28BQ9BUN5 DAP3-209ENST00000465375 729 ntTSL 2 BASIC5.36□□□□□ -1.55
CCDC28BQ9BUN5 AC098847.1-201ENST00000473094 348 ntBASIC5.36□□□□□ -1.55
CCDC28BQ9BUN5 AC107396.1-201ENST00000509641 735 ntTSL 5 BASIC5.36□□□□□ -1.55
CCDC28BQ9BUN5 GUSBP9-201ENST00000510138 584 ntBASIC5.36□□□□□ -1.55
CCDC28BQ9BUN5 BTG4P1-201ENST00000510421 183 ntBASIC5.36□□□□□ -1.55
CCDC28BQ9BUN5 HMGN1P9-201ENST00000515212 298 ntBASIC5.36□□□□□ -1.55
CCDC28BQ9BUN5 SCARNA20.4-201ENST00000516969 131 ntBASIC5.36□□□□□ -1.55
CCDC28BQ9BUN5 IGKV3D-25-201ENST00000519599 235 ntBASIC5.36□□□□□ -1.55
CCDC28BQ9BUN5 LINC02237-201ENST00000521753 805 ntTSL 3 BASIC5.36□□□□□ -1.55
CCDC28BQ9BUN5 AC099805.1-205ENST00000521794 837 ntTSL 2 BASIC5.36□□□□□ -1.55
CCDC28BQ9BUN5 AP003396.4-201ENST00000527574 265 ntBASIC5.36□□□□□ -1.55
CCDC28BQ9BUN5 BNIP3P1-201ENST00000547295 580 ntBASIC5.36□□□□□ -1.55
CCDC28BQ9BUN5 OR4C13-201ENST00000555099 1029 ntAPPRIS P1 BASIC5.36□□□□□ -1.55
CCDC28BQ9BUN5 AL136298.1-202ENST00000556520 518 ntTSL 3 BASIC5.36□□□□□ -1.55
CCDC28BQ9BUN5 AC136944.1-201ENST00000567464 560 ntTSL 5 BASIC5.36□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 193.9 ms