Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 AC100767.2-201ENST00000604840 693 ntBASIC7.09□□□□□ -1.27
LIG3P49916 AC244196.4-201ENST00000611787 392 ntAPPRIS P1 BASIC7.09□□□□□ -1.27
LIG3P49916 THOC1-220ENST00000621904 1083 ntTSL 5 BASIC7.09□□□□□ -1.27
LIG3P49916 TTN-AS1-268ENST00000629094 604 ntTSL 5 BASIC7.09□□□□□ -1.27
LIG3P49916 AC002384.2-201ENST00000636036 790 ntTSL 3 BASIC7.09□□□□□ -1.27
LIG3P49916 MIR4278-201ENST00000636094 69 ntBASIC7.09□□□□□ -1.27
LIG3P49916 MTND5P24-201ENST00000438892 1767 ntBASIC7.09□□□□□ -1.27
LIG3P49916 POT1-AS1-204ENST00000449642 3238 ntTSL 1 (best) BASIC7.09□□□□□ -1.27
LIG3P49916 NLRP4-203ENST00000587891 3201 ntTSL 2 BASIC7.09□□□□□ -1.27
LIG3P49916 EPS8-207ENST00000540613 2204 ntTSL 2 BASIC7.09□□□□□ -1.27
LIG3P49916 CCDC125-202ENST00000396496 4198 ntAPPRIS P1 TSL 5 BASIC7.09□□□□□ -1.27
LIG3P49916 TANC2-202ENST00000424789 11721 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.27
LIG3P49916 NBPF9-203ENST00000610300 2930 ntTSL 1 (best) BASIC7.09□□□□□ -1.27
LIG3P49916 NUP43-201ENST00000340413 3874 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.27
LIG3P49916 PDE4D-216ENST00000507116 3350 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.27
LIG3P49916 SETDB2-201ENST00000258672 2138 ntTSL 5 BASIC7.09□□□□□ -1.28
LIG3P49916 AC138393.1-206ENST00000540997 1886 ntBASIC7.09□□□□□ -1.28
LIG3P49916 SDAD1-201ENST00000356260 3017 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.28
LIG3P49916 POLR2B-202ENST00000381227 4108 ntAPPRIS P1 TSL 5 BASIC7.08□□□□□ -1.28
LIG3P49916 ZC3H11B-201ENST00000367211 2994 ntAPPRIS P5 TSL 5 BASIC7.08□□□□□ -1.28
LIG3P49916 AC027575.3-201ENST00000583058 2747 ntBASIC7.08□□□□□ -1.28
LIG3P49916 PTER-202ENST00000378000 3777 ntAPPRIS P1 TSL 1 (best) BASIC7.08□□□□□ -1.28
LIG3P49916 OSBPL9-203ENST00000428468 2893 ntAPPRIS P3 TSL 1 (best) BASIC7.08□□□□□ -1.28
LIG3P49916 TAF9-205ENST00000506736 1331 ntAPPRIS P2 TSL 1 (best) BASIC7.08□□□□□ -1.28
LIG3P49916 ABCA6-206ENST00000590645 1511 ntTSL 1 (best) BASIC7.08□□□□□ -1.28
LIG3P49916 LINC01981-201ENST00000432163 2833 ntTSL 1 (best) BASIC7.08□□□□□ -1.28
LIG3P49916 HHLA1-201ENST00000414222 4105 ntAPPRIS ALT2 TSL 5 BASIC7.08□□□□□ -1.28
LIG3P49916 SPAG6-209ENST00000538630 2376 ntTSL 5 BASIC7.08□□□□□ -1.28
LIG3P49916 NAV3-201ENST00000397909 9821 ntTSL 1 (best) BASIC7.08□□□□□ -1.28
LIG3P49916 METTL21EP-201ENST00000298105 713 ntBASIC7.08□□□□□ -1.28
LIG3P49916 AL031577.2-201ENST00000404133 280 ntBASIC7.08□□□□□ -1.28
LIG3P49916 UGT1A6-203ENST00000406651 785 ntTSL 1 (best) BASIC7.08□□□□□ -1.28
LIG3P49916 TIMD4-203ENST00000407087 1145 ntAPPRIS ALT2 TSL 2 BASIC7.08□□□□□ -1.28
LIG3P49916 AC009965.1-201ENST00000411436 570 ntTSL 4 BASIC7.08□□□□□ -1.28
LIG3P49916 VTA1P1-201ENST00000414044 866 ntBASIC7.08□□□□□ -1.28
LIG3P49916 AC007879.3-201ENST00000417096 556 ntTSL 4 BASIC7.08□□□□□ -1.28
LIG3P49916 RPL6-202ENST00000424576 1074 ntAPPRIS P1 TSL 1 (best) BASIC7.08□□□□□ -1.28
LIG3P49916 GAPDHP69-201ENST00000425504 1008 ntBASIC7.08□□□□□ -1.28
LIG3P49916 AL353801.1-201ENST00000425541 425 ntTSL 3 BASIC7.08□□□□□ -1.28
LIG3P49916 AC023469.2-201ENST00000425983 657 ntTSL 5 BASIC7.08□□□□□ -1.28
LIG3P49916 AC009784.1-201ENST00000426484 460 ntBASIC7.08□□□□□ -1.28
LIG3P49916 YWHAEP5-201ENST00000431545 765 ntBASIC7.08□□□□□ -1.28
LIG3P49916 MTND1P1-201ENST00000445453 368 ntBASIC7.08□□□□□ -1.28
LIG3P49916 AC079760.2-201ENST00000449361 681 ntTSL 5 BASIC7.08□□□□□ -1.28
LIG3P49916 MEF2AP1-201ENST00000454867 863 ntBASIC7.08□□□□□ -1.28
LIG3P49916 AC011287.2-201ENST00000456809 842 ntTSL 5 BASIC7.08□□□□□ -1.28
LIG3P49916 AL356364.1-201ENST00000458443 182 ntTSL 3 BASIC7.08□□□□□ -1.28
LIG3P49916 SNHG12-207ENST00000475441 444 ntTSL 3 BASIC7.08□□□□□ -1.28
LIG3P49916 RPL23AP8-201ENST00000479812 475 ntBASIC7.08□□□□□ -1.28
LIG3P49916 AC069304.1-201ENST00000491593 704 ntBASIC7.08□□□□□ -1.28
LIG3P49916 AC010655.2-201ENST00000493710 662 ntTSL 3 BASIC7.08□□□□□ -1.28
LIG3P49916 CDH12P2-201ENST00000504393 298 ntBASIC7.08□□□□□ -1.28
LIG3P49916 DSTNP2-201ENST00000504533 515 ntBASIC7.08□□□□□ -1.28
LIG3P49916 AC108159.1-201ENST00000505408 489 ntTSL 3 BASIC7.08□□□□□ -1.28
LIG3P49916 C5orf64-203ENST00000505642 2970 ntTSL 2 BASIC7.08□□□□□ -1.28
LIG3P49916 AC021146.8-201ENST00000507455 733 ntBASIC7.08□□□□□ -1.28
LIG3P49916 AC093325.1-201ENST00000508378 326 ntBASIC7.08□□□□□ -1.28
LIG3P49916 LINC00589-202ENST00000518623 938 ntTSL 4 BASIC7.08□□□□□ -1.28
LIG3P49916 AC097173.2-201ENST00000518701 474 ntTSL 3 BASIC7.08□□□□□ -1.28
LIG3P49916 AC103952.1-201ENST00000521872 590 ntTSL 3 BASIC7.08□□□□□ -1.28
LIG3P49916 LONRF1-203ENST00000525024 841 ntTSL 1 (best) BASIC7.08□□□□□ -1.28
LIG3P49916 SSU72P6-201ENST00000532644 488 ntBASIC7.08□□□□□ -1.28
LIG3P49916 GLYCAM1-202ENST00000546607 553 ntTSL 1 (best) BASIC7.08□□□□□ -1.28
LIG3P49916 ELK3-206ENST00000552142 1242 ntTSL 5 BASIC7.08□□□□□ -1.28
LIG3P49916 AL135978.1-201ENST00000553618 1266 ntBASIC7.08□□□□□ -1.28
LIG3P49916 AL355075.2-201ENST00000555435 478 ntTSL 2 BASIC7.08□□□□□ -1.28
LIG3P49916 AC006530.1-201ENST00000555980 571 ntBASIC7.08□□□□□ -1.28
LIG3P49916 AC051619.4-201ENST00000560034 292 ntTSL 5 BASIC7.08□□□□□ -1.28
LIG3P49916 AC027104.1-201ENST00000563702 681 ntBASIC7.08□□□□□ -1.28
LIG3P49916 AC116553.2-201ENST00000564203 463 ntBASIC7.08□□□□□ -1.28
LIG3P49916 AC004381.1-201ENST00000565498 351 ntTSL 5 BASIC7.08□□□□□ -1.28
LIG3P49916 AC079171.1-201ENST00000568788 914 ntBASIC7.08□□□□□ -1.28
LIG3P49916 AC010761.3-201ENST00000578819 499 ntTSL 3 BASIC7.08□□□□□ -1.28
LIG3P49916 MIR7515HG-250ENST00000592565 856 ntTSL 5 BASIC7.08□□□□□ -1.28
LIG3P49916 AC063962.1-201ENST00000608199 521 ntBASIC7.08□□□□□ -1.28
LIG3P49916 MIR6774-201ENST00000614651 70 ntBASIC7.08□□□□□ -1.28
LIG3P49916 MFSD8-245ENST00000641743 948 ntBASIC7.08□□□□□ -1.28
LIG3P49916 EYA3-204ENST00000436342 5943 ntTSL 2 BASIC7.08□□□□□ -1.28
LIG3P49916 CENPI-204ENST00000423383 2314 ntAPPRIS P3 TSL 5 BASIC7.08□□□□□ -1.28
LIG3P49916 AC010099.4-201ENST00000424515 1453 ntTSL 5 BASIC7.08□□□□□ -1.28
LIG3P49916 AP000776.1-201ENST00000530032 1663 ntBASIC7.08□□□□□ -1.28
LIG3P49916 LINC01684-203ENST00000453784 2908 ntTSL 2 BASIC7.08□□□□□ -1.28
LIG3P49916 ADGRB3-203ENST00000546190 4569 ntAPPRIS P1 TSL 1 (best) BASIC7.08□□□□□ -1.28
LIG3P49916 BPIFC-203ENST00000397452 2091 ntAPPRIS P1 TSL 5 BASIC7.08□□□□□ -1.28
LIG3P49916 NEDD9-202ENST00000379446 4536 ntAPPRIS P3 TSL 1 (best) BASIC7.08□□□□□ -1.28
LIG3P49916 PGM3-215ENST00000616566 5905 ntTSL 2 BASIC7.08□□□□□ -1.28
LIG3P49916 LINC00862-204ENST00000637098 1400 ntTSL 5 BASIC7.08□□□□□ -1.28
LIG3P49916 AC027514.1-201ENST00000588561 1603 ntBASIC7.08□□□□□ -1.28
LIG3P49916 GRXCR2-201ENST00000377976 2002 ntAPPRIS P1 TSL 2 BASIC7.08□□□□□ -1.28
LIG3P49916 LRMP-204ENST00000547044 2208 ntAPPRIS P2 TSL 1 (best) BASIC7.08□□□□□ -1.28
LIG3P49916 AC005225.5-201ENST00000623547 2225 ntBASIC7.08□□□□□ -1.28
LIG3P49916 OR7C1-205ENST00000642030 11778 ntAPPRIS P1 BASIC7.08□□□□□ -1.28
LIG3P49916 RORB-201ENST00000376896 9551 ntAPPRIS P1 TSL 1 (best) BASIC7.08□□□□□ -1.28
LIG3P49916 JADE3-203ENST00000611250 4713 ntAPPRIS P1 TSL 2 BASIC7.08□□□□□ -1.28
LIG3P49916 ZC3H11A-202ENST00000367210 5877 ntAPPRIS P1 TSL 1 (best) BASIC7.07□□□□□ -1.28
LIG3P49916 TRPC4-207ENST00000426868 2709 ntTSL 2 BASIC7.07□□□□□ -1.28
LIG3P49916 MAGT1-204ENST00000610432 4019 ntAPPRIS P2 TSL 1 (best) BASIC7.07□□□□□ -1.28
LIG3P49916 ANKS1B-216ENST00000549558 2268 ntTSL 1 (best) BASIC7.07□□□□□ -1.28
LIG3P49916 LINC01152-201ENST00000472655 3578 ntTSL 1 (best) BASIC7.07□□□□□ -1.28
LIG3P49916 NXPE4-202ENST00000424261 1687 ntTSL 1 (best) BASIC7.07□□□□□ -1.28
Retrieved 100 of 98,524 protein–RNA pairs in 72.8 ms