Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 AL445991.1-201ENST00000450381 475 ntBASIC4.91□□□□□ -1.62
HOXA1P49639 RNA5SP103-201ENST00000459503 118 ntBASIC4.91□□□□□ -1.62
HOXA1P49639 GCSAM-204ENST00000484193 1036 ntAPPRIS ALT1 TSL 2 BASIC4.91□□□□□ -1.62
HOXA1P49639 RN7SL205P-201ENST00000490174 284 ntBASIC4.91□□□□□ -1.62
HOXA1P49639 OR9N1P-202ENST00000494289 481 ntBASIC4.91□□□□□ -1.62
HOXA1P49639 HAUS1P1-201ENST00000505275 832 ntBASIC4.91□□□□□ -1.62
HOXA1P49639 AC010343.3-202ENST00000510327 619 ntTSL 3 BASIC4.91□□□□□ -1.62
HOXA1P49639 snoU109.5-201ENST00000516231 132 ntBASIC4.91□□□□□ -1.62
HOXA1P49639 Y_RNA.710-201ENST00000516975 110 ntBASIC4.91□□□□□ -1.62
HOXA1P49639 AC008708.1-201ENST00000517346 474 ntTSL 3 BASIC4.91□□□□□ -1.62
HOXA1P49639 FBXO16-207ENST00000518734 995 ntAPPRIS ALT2 TSL 1 (best) BASIC4.91□□□□□ -1.62
HOXA1P49639 COX6C-210ENST00000524245 513 ntAPPRIS P1 TSL 2 BASIC4.91□□□□□ -1.62
HOXA1P49639 AC138701.1-201ENST00000524329 714 ntBASIC4.91□□□□□ -1.62
HOXA1P49639 MALAT1-203ENST00000544868 480 ntTSL 3 BASIC4.91□□□□□ -1.62
HOXA1P49639 AC009396.1-201ENST00000553628 1079 ntTSL 2 BASIC4.91□□□□□ -1.62
HOXA1P49639 AL049870.3-201ENST00000555157 360 ntTSL 2 BASIC4.91□□□□□ -1.62
HOXA1P49639 AC073941.1-201ENST00000559148 539 ntTSL 4 BASIC4.91□□□□□ -1.62
HOXA1P49639 AC066613.1-201ENST00000559977 1053 ntTSL 2 BASIC4.91□□□□□ -1.62
HOXA1P49639 PWRN1-207ENST00000565893 818 ntTSL 3 BASIC4.91□□□□□ -1.62
HOXA1P49639 AC106730.2-201ENST00000566641 540 ntBASIC4.91□□□□□ -1.62
HOXA1P49639 MTATP6P2-201ENST00000603319 678 ntBASIC4.91□□□□□ -1.62
HOXA1P49639 LINC00458-206ENST00000607494 849 ntTSL 3 BASIC4.91□□□□□ -1.62
HOXA1P49639 AC092902.2-219ENST00000608488 822 ntTSL 5 BASIC4.91□□□□□ -1.62
HOXA1P49639 MKKS-203ENST00000609375 882 ntTSL 2 BASIC4.91□□□□□ -1.62
HOXA1P49639 AC097467.3-215ENST00000609486 793 ntTSL 5 BASIC4.91□□□□□ -1.62
HOXA1P49639 AC097467.3-214ENST00000610249 843 ntTSL 5 BASIC4.91□□□□□ -1.62
HOXA1P49639 AC015712.7-201ENST00000615211 635 ntBASIC4.91□□□□□ -1.62
HOXA1P49639 Metazoa_SRP.66-201ENST00000615609 282 ntBASIC4.91□□□□□ -1.62
HOXA1P49639 MALAT1-209ENST00000616691 587 ntTSL 2 BASIC4.91□□□□□ -1.62
HOXA1P49639 AC008147.4-201ENST00000617570 1204 ntBASIC4.91□□□□□ -1.62
HOXA1P49639 FGF1-215ENST00000619447 3818 ntAPPRIS P1 TSL 4 BASIC4.91□□□□□ -1.62
HOXA1P49639 ZNHIT3-208ENST00000619730 926 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
HOXA1P49639 AC068213.1-201ENST00000625124 226 ntBASIC4.91□□□□□ -1.62
HOXA1P49639 DRG1-207ENST00000629688 309 ntTSL 5 BASIC4.91□□□□□ -1.62
HOXA1P49639 AC099654.8-201ENST00000637757 681 ntBASIC4.91□□□□□ -1.62
HOXA1P49639 OR5AC4P-202ENST00000642086 985 ntBASIC4.91□□□□□ -1.62
HOXA1P49639 Z83820.1-201ENST00000456978 1499 ntBASIC4.91□□□□□ -1.62
HOXA1P49639 PRLR-201ENST00000231423 1679 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
HOXA1P49639 AC011912.1-201ENST00000623483 5819 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
HOXA1P49639 LDAH-212ENST00000619656 3663 ntTSL 2 BASIC4.91□□□□□ -1.62
HOXA1P49639 RALGAPA1-204ENST00000553892 6271 ntTSL 5 BASIC4.91□□□□□ -1.62
HOXA1P49639 AC124312.1-201ENST00000551312 1325 ntAPPRIS P5 TSL 5 BASIC4.91□□□□□ -1.62
HOXA1P49639 AC245100.4-202ENST00000634638 1342 ntTSL 5 BASIC4.91□□□□□ -1.62
HOXA1P49639 PCDH15-215ENST00000409834 5401 ntTSL 5 BASIC4.91□□□□□ -1.62
HOXA1P49639 AC024587.1-201ENST00000505925 2157 ntBASIC4.91□□□□□ -1.62
HOXA1P49639 HACD3-209ENST00000566511 1782 ntTSL 5 BASIC4.91□□□□□ -1.62
HOXA1P49639 SLC1A3-201ENST00000265113 4170 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.62
HOXA1P49639 ZNF624-201ENST00000311331 4241 ntAPPRIS P1 TSL 2 BASIC4.9□□□□□ -1.62
HOXA1P49639 GTSF1-209ENST00000552397 1621 ntAPPRIS P1 TSL 2 BASIC4.9□□□□□ -1.62
HOXA1P49639 LMO3-201ENST00000261169 3810 ntTSL 1 (best) BASIC4.9□□□□□ -1.62
HOXA1P49639 UACA-211ENST00000560441 4723 ntAPPRIS ALT2 TSL 5 BASIC4.9□□□□□ -1.62
HOXA1P49639 DAZ2-203ENST00000382424 3853 ntAPPRIS ALT2 TSL 5 BASIC4.9□□□□□ -1.62
HOXA1P49639 PDCD1LG2-201ENST00000397747 2365 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.62
HOXA1P49639 HSPA8P18-201ENST00000439846 1928 ntBASIC4.9□□□□□ -1.62
HOXA1P49639 DNAH5-201ENST00000265104 15633 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.62
HOXA1P49639 RNU1-49P-201ENST00000363468 159 ntBASIC4.9□□□□□ -1.63
HOXA1P49639 RN7SKP257-201ENST00000364525 309 ntBASIC4.9□□□□□ -1.63
HOXA1P49639 AC092634.1-201ENST00000366505 199 ntBASIC4.9□□□□□ -1.63
HOXA1P49639 FPGT-TNNI3K-201ENST00000370893 1195 ntTSL 2 BASIC4.9□□□□□ -1.63
HOXA1P49639 OR2J2-202ENST00000377167 1272 ntAPPRIS P1 BASIC4.9□□□□□ -1.63
HOXA1P49639 EEF1AKMT1-201ENST00000382754 875 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.63
HOXA1P49639 RN7SKP121-201ENST00000410842 305 ntBASIC4.9□□□□□ -1.63
HOXA1P49639 AC211486.3-201ENST00000412694 621 ntBASIC4.9□□□□□ -1.63
HOXA1P49639 AL356968.2-201ENST00000412769 1257 ntBASIC4.9□□□□□ -1.63
HOXA1P49639 MEAF6P1-201ENST00000416092 327 ntBASIC4.9□□□□□ -1.63
HOXA1P49639 AC092687.1-201ENST00000418835 389 ntTSL 3 BASIC4.9□□□□□ -1.63
HOXA1P49639 AC074035.1-201ENST00000420725 1184 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
HOXA1P49639 AC016745.1-201ENST00000422178 508 ntTSL 5 BASIC4.9□□□□□ -1.63
HOXA1P49639 AL034397.2-201ENST00000424241 857 ntTSL 2 BASIC4.9□□□□□ -1.63
HOXA1P49639 MTND4LP13-201ENST00000425022 298 ntBASIC4.9□□□□□ -1.63
HOXA1P49639 LINC01435-201ENST00000425050 722 ntTSL 3 BASIC4.9□□□□□ -1.63
HOXA1P49639 LINC01473-202ENST00000427108 695 ntTSL 5 BASIC4.9□□□□□ -1.63
HOXA1P49639 AC092646.1-201ENST00000427142 901 ntBASIC4.9□□□□□ -1.63
HOXA1P49639 AKR1D1-203ENST00000432161 1236 ntTSL 2 BASIC4.9□□□□□ -1.63
HOXA1P49639 AC011242.1-201ENST00000433596 1158 ntBASIC4.9□□□□□ -1.63
HOXA1P49639 PPIAP10-201ENST00000438675 458 ntBASIC4.9□□□□□ -1.63
HOXA1P49639 SUMO2P1-206ENST00000445436 284 ntBASIC4.9□□□□□ -1.63
HOXA1P49639 LINC00448-202ENST00000448411 433 ntTSL 2 BASIC4.9□□□□□ -1.63
HOXA1P49639 NPM1P9-201ENST00000453156 844 ntBASIC4.9□□□□□ -1.63
HOXA1P49639 TRBV5-2-201ENST00000489095 273 ntBASIC4.9□□□□□ -1.63
HOXA1P49639 NREP-217ENST00000509025 987 ntTSL 3 BASIC4.9□□□□□ -1.63
HOXA1P49639 AC010460.2-201ENST00000509054 677 ntBASIC4.9□□□□□ -1.63
HOXA1P49639 AC090958.1-201ENST00000511122 351 ntBASIC4.9□□□□□ -1.63
HOXA1P49639 AC093664.1-201ENST00000511779 289 ntBASIC4.9□□□□□ -1.63
HOXA1P49639 NREP-223ENST00000515855 801 ntTSL 4 BASIC4.9□□□□□ -1.63
HOXA1P49639 AC008632.1-202ENST00000518605 452 ntTSL 3 BASIC4.9□□□□□ -1.63
HOXA1P49639 AC099805.1-205ENST00000521794 837 ntTSL 2 BASIC4.9□□□□□ -1.63
HOXA1P49639 AC245519.1-201ENST00000522799 512 ntTSL 4 BASIC4.9□□□□□ -1.63
HOXA1P49639 CREBZF-209ENST00000534224 545 ntTSL 4 BASIC4.9□□□□□ -1.63
HOXA1P49639 UBTFL9-201ENST00000534504 1148 ntBASIC4.9□□□□□ -1.63
HOXA1P49639 MYL12A-202ENST00000536605 899 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.63
HOXA1P49639 AC025419.1-203ENST00000540652 726 ntTSL 3 BASIC4.9□□□□□ -1.63
HOXA1P49639 AC093014.1-201ENST00000548926 724 ntBASIC4.9□□□□□ -1.63
HOXA1P49639 TMEM116-208ENST00000549537 1229 ntAPPRIS ALT2 TSL 2 BASIC4.9□□□□□ -1.63
HOXA1P49639 AC123567.2-202ENST00000550759 446 ntTSL 3 BASIC4.9□□□□□ -1.63
HOXA1P49639 AL049779.3-201ENST00000557141 606 ntBASIC4.9□□□□□ -1.63
HOXA1P49639 AC007014.1-201ENST00000572828 610 ntTSL 3 BASIC4.9□□□□□ -1.63
HOXA1P49639 TTC39C-204ENST00000577185 533 ntTSL 3 BASIC4.9□□□□□ -1.63
HOXA1P49639 RPL26-204ENST00000578812 1002 ntTSL 2 BASIC4.9□□□□□ -1.63
HOXA1P49639 MYL12A-209ENST00000580887 899 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 80.1 ms