Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 NR2F2-AS1-205ENST00000559505 1005 ntTSL 5 BASIC6.01□□□□□ -1.45
MSX2P35548 C16orf97-205ENST00000568524 406 ntTSL 5 BASIC6.01□□□□□ -1.45
MSX2P35548 AC135628.1-201ENST00000568867 534 ntBASIC6.01□□□□□ -1.45
MSX2P35548 AC012213.3-201ENST00000577199 777 ntBASIC6.01□□□□□ -1.45
MSX2P35548 RN7SL208P-201ENST00000577964 296 ntBASIC6.01□□□□□ -1.45
MSX2P35548 AC103810.2-203ENST00000584959 631 ntTSL 5 BASIC6.01□□□□□ -1.45
MSX2P35548 AC011824.3-201ENST00000585093 563 ntTSL 4 BASIC6.01□□□□□ -1.45
MSX2P35548 AC091132.5-204ENST00000586348 630 ntTSL 3 BASIC6.01□□□□□ -1.45
MSX2P35548 LINC01841-201ENST00000586698 573 ntTSL 4 BASIC6.01□□□□□ -1.45
MSX2P35548 AC006116.9-203ENST00000591036 566 ntTSL 4 BASIC6.01□□□□□ -1.45
MSX2P35548 LINC02028-206ENST00000593326 810 ntTSL 5 BASIC6.01□□□□□ -1.45
MSX2P35548 AC245052.7-201ENST00000601161 359 ntBASIC6.01□□□□□ -1.45
MSX2P35548 AC040170.1-201ENST00000602425 564 ntTSL 2 BASIC6.01□□□□□ -1.45
MSX2P35548 SNORD96A-201ENST00000606577 79 ntBASIC6.01□□□□□ -1.45
MSX2P35548 CXCL8-201ENST00000307407 1705 ntAPPRIS P2 TSL 1 (best) BASIC6.01□□□□□ -1.45
MSX2P35548 AP000526.1-201ENST00000603308 1388 ntBASIC6.01□□□□□ -1.45
MSX2P35548 ARHGEF3-214ENST00000497267 2197 ntTSL 2 BASIC6.01□□□□□ -1.45
MSX2P35548 KCNJ2-201ENST00000243457 5392 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
MSX2P35548 OR6C4-202ENST00000641569 5141 ntAPPRIS P1 BASIC6.01□□□□□ -1.45
MSX2P35548 AC112255.1-201ENST00000624070 2493 ntBASIC6.01□□□□□ -1.45
MSX2P35548 SLC35A5-206ENST00000492406 4399 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
MSX2P35548 DCC-202ENST00000412726 9525 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
MSX2P35548 AC016907.2-203ENST00000455424 3563 ntTSL 3 BASIC6.01□□□□□ -1.45
MSX2P35548 ZNF300P1-202ENST00000520773 3115 ntTSL 5 BASIC6.01□□□□□ -1.45
MSX2P35548 NSF-206ENST00000575068 2667 ntTSL 2 BASIC6.01□□□□□ -1.45
MSX2P35548 AC011124.1-201ENST00000521221 1762 ntTSL 2 BASIC6.01□□□□□ -1.45
MSX2P35548 AC008505.1-203ENST00000637345 1766 ntTSL 5 BASIC6.01□□□□□ -1.45
MSX2P35548 ANGPT2-201ENST00000325203 5416 ntAPPRIS P3 TSL 1 (best) BASIC6□□□□□ -1.45
MSX2P35548 AC092111.2-201ENST00000611627 1414 ntBASIC6□□□□□ -1.45
MSX2P35548 ZC3H7A-214ENST00000575984 2632 ntTSL 1 (best) BASIC6□□□□□ -1.45
MSX2P35548 LINC01419-201ENST00000522365 1521 ntTSL 1 (best) BASIC6□□□□□ -1.45
MSX2P35548 SCN2A-209ENST00000636071 8881 ntAPPRIS ALT1 TSL 5 BASIC6□□□□□ -1.45
MSX2P35548 SCN2A-214ENST00000636985 8856 ntTSL 5 BASIC6□□□□□ -1.45
MSX2P35548 RFX3-212ENST00000617270 9253 ntAPPRIS P1 TSL 2 BASIC6□□□□□ -1.45
MSX2P35548 OR7D2-202ENST00000641288 3248 ntAPPRIS P1 BASIC6□□□□□ -1.45
MSX2P35548 ASAH2-203ENST00000443575 1942 ntTSL 5 BASIC6□□□□□ -1.45
MSX2P35548 AC140134.1-201ENST00000511830 3544 ntBASIC6□□□□□ -1.45
MSX2P35548 ITGB3BP-201ENST00000271002 948 ntAPPRIS P3 TSL 1 (best) BASIC6□□□□□ -1.45
MSX2P35548 OR5M8-201ENST00000327216 1047 ntAPPRIS P1 BASIC6□□□□□ -1.45
MSX2P35548 PIH1D3-201ENST00000336387 993 ntAPPRIS P1 TSL 5 BASIC6□□□□□ -1.45
MSX2P35548 CREM-201ENST00000337656 900 ntAPPRIS ALT1 TSL 5 BASIC6□□□□□ -1.45
MSX2P35548 RNA5SP321-201ENST00000362722 111 ntBASIC6□□□□□ -1.45
MSX2P35548 RNA5-8SP5-201ENST00000365304 152 ntBASIC6□□□□□ -1.45
MSX2P35548 MIR433-201ENST00000384837 93 ntBASIC6□□□□□ -1.45
MSX2P35548 TRAV22-201ENST00000390450 464 ntAPPRIS P1 BASIC6□□□□□ -1.45
MSX2P35548 S100B-203ENST00000397648 839 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
MSX2P35548 AF130351.1-202ENST00000400562 808 ntAPPRIS P5 TSL 3 BASIC6□□□□□ -1.45
MSX2P35548 AC233289.1-201ENST00000403700 508 ntBASIC6□□□□□ -1.45
MSX2P35548 NUDT19P3-201ENST00000404698 555 ntBASIC6□□□□□ -1.45
MSX2P35548 AL355379.1-201ENST00000405542 640 ntBASIC6□□□□□ -1.45
MSX2P35548 RN7SKP151-201ENST00000410230 316 ntBASIC6□□□□□ -1.45
MSX2P35548 RN7SKP129-201ENST00000410288 299 ntBASIC6□□□□□ -1.45
MSX2P35548 AC019130.1-201ENST00000413841 391 ntTSL 2 BASIC6□□□□□ -1.45
MSX2P35548 AL390195.1-202ENST00000416099 723 ntTSL 2 BASIC6□□□□□ -1.45
MSX2P35548 ELOCP9-201ENST00000418624 239 ntBASIC6□□□□□ -1.45
MSX2P35548 AC015977.1-201ENST00000418887 292 ntBASIC6□□□□□ -1.45
MSX2P35548 AL390036.1-201ENST00000419428 734 ntTSL 5 BASIC6□□□□□ -1.45
MSX2P35548 AL359633.1-201ENST00000421403 310 ntBASIC6□□□□□ -1.45
MSX2P35548 IGKV3OR2-268-201ENST00000421835 350 ntAPPRIS P1 BASIC6□□□□□ -1.45
MSX2P35548 SLC9B1P4-201ENST00000421957 1288 ntBASIC6□□□□□ -1.45
MSX2P35548 AL365203.2-201ENST00000423444 196 ntBASIC6□□□□□ -1.45
MSX2P35548 AL357832.1-201ENST00000427460 420 ntTSL 3 BASIC6□□□□□ -1.45
MSX2P35548 NPM1P33-201ENST00000438918 872 ntBASIC6□□□□□ -1.45
MSX2P35548 MTND2P20-201ENST00000440805 661 ntBASIC6□□□□□ -1.45
MSX2P35548 AC139712.3-201ENST00000443926 639 ntTSL 2 BASIC6□□□□□ -1.45
MSX2P35548 CATSPER2P1-205ENST00000446479 419 ntTSL 1 (best) BASIC6□□□□□ -1.45
MSX2P35548 Z95152.1-201ENST00000453556 656 ntBASIC6□□□□□ -1.45
MSX2P35548 MRPL35P4-201ENST00000453682 566 ntBASIC6□□□□□ -1.45
MSX2P35548 RPL36AP55-201ENST00000454114 305 ntBASIC6□□□□□ -1.45
MSX2P35548 AC006947.1-201ENST00000457168 484 ntTSL 3 BASIC6□□□□□ -1.45
MSX2P35548 AC005410.1-202ENST00000460347 485 ntBASIC6□□□□□ -1.45
MSX2P35548 AL157777.1-201ENST00000468100 304 ntBASIC6□□□□□ -1.45
MSX2P35548 AC128716.1-201ENST00000475129 166 ntBASIC6□□□□□ -1.45
MSX2P35548 RPL5P15-201ENST00000475870 897 ntBASIC6□□□□□ -1.45
MSX2P35548 AC005017.1-201ENST00000482002 490 ntBASIC6□□□□□ -1.45
MSX2P35548 PLGLA-202ENST00000482249 475 ntTSL 3 BASIC6□□□□□ -1.45
MSX2P35548 AL035690.1-201ENST00000490892 383 ntBASIC6□□□□□ -1.45
MSX2P35548 AC096576.3-201ENST00000505528 721 ntTSL 5 BASIC6□□□□□ -1.45
MSX2P35548 RFESD-208ENST00000513950 464 ntTSL 5 BASIC6□□□□□ -1.45
MSX2P35548 AC018682.2-201ENST00000517716 399 ntTSL 5 BASIC6□□□□□ -1.45
MSX2P35548 AC079209.1-201ENST00000519412 820 ntTSL 3 BASIC6□□□□□ -1.45
MSX2P35548 CASC21-201ENST00000521586 290 ntTSL 1 (best) BASIC6□□□□□ -1.45
MSX2P35548 TXNRD1-212ENST00000526390 3808 ntTSL 5 BASIC6□□□□□ -1.45
MSX2P35548 MIR4800-201ENST00000537353 80 ntBASIC6□□□□□ -1.45
MSX2P35548 C15orf41-203ENST00000562489 715 ntTSL 2 BASIC6□□□□□ -1.45
MSX2P35548 AC009120.3-201ENST00000563335 499 ntBASIC6□□□□□ -1.45
MSX2P35548 AL133297.1-201ENST00000568149 404 ntTSL 2 BASIC6□□□□□ -1.45
MSX2P35548 AC105411.1-203ENST00000568819 601 ntTSL 5 BASIC6□□□□□ -1.45
MSX2P35548 AC138907.7-201ENST00000568972 358 ntTSL 5 BASIC6□□□□□ -1.45
MSX2P35548 AC016382.1-201ENST00000583580 387 ntTSL 3 BASIC6□□□□□ -1.45
MSX2P35548 MIR4420-201ENST00000583944 77 ntBASIC6□□□□□ -1.45
MSX2P35548 MIR5682-201ENST00000584864 76 ntBASIC6□□□□□ -1.45
MSX2P35548 ODF4-202ENST00000584943 804 ntAPPRIS ALT2 TSL 1 (best) BASIC6□□□□□ -1.45
MSX2P35548 AC015802.2-201ENST00000589690 189 ntBASIC6□□□□□ -1.45
MSX2P35548 AC008734.1-201ENST00000594006 537 ntTSL 2 BASIC6□□□□□ -1.45
MSX2P35548 LINC01966-201ENST00000595809 821 ntTSL 5 BASIC6□□□□□ -1.45
MSX2P35548 AC024451.4-201ENST00000602578 752 ntBASIC6□□□□□ -1.45
MSX2P35548 AL035417.2-201ENST00000603887 796 ntBASIC6□□□□□ -1.45
MSX2P35548 AC064872.1-201ENST00000604823 1072 ntBASIC6□□□□□ -1.45
MSX2P35548 AC245297.3-203ENST00000612135 405 ntTSL 5 BASIC6□□□□□ -1.45
Retrieved 100 of 98,524 protein–RNA pairs in 81.6 ms