Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 AC084754.1-201ENST00000463466 464 ntBASIC5□□□□□ -1.61
SKA3Q8IX90 PEX5L-AS1-201ENST00000466064 827 ntTSL 2 BASIC5□□□□□ -1.61
SKA3Q8IX90 RPS23P6-201ENST00000466136 431 ntBASIC5□□□□□ -1.61
SKA3Q8IX90 MLF1-205ENST00000469452 1098 ntTSL 1 (best) BASIC5□□□□□ -1.61
SKA3Q8IX90 RPL5P22-201ENST00000480199 884 ntBASIC5□□□□□ -1.61
SKA3Q8IX90 AC022215.1-201ENST00000481770 362 ntBASIC5□□□□□ -1.61
SKA3Q8IX90 COX6B1P2-201ENST00000489624 230 ntBASIC5□□□□□ -1.61
SKA3Q8IX90 LINC00483-204ENST00000502517 940 ntTSL 1 (best) BASIC5□□□□□ -1.61
SKA3Q8IX90 AC021146.10-201ENST00000515628 706 ntBASIC5□□□□□ -1.61
SKA3Q8IX90 LINCR-0001-202ENST00000518098 524 ntTSL 4 BASIC5□□□□□ -1.61
SKA3Q8IX90 AC009884.1-201ENST00000522670 545 ntTSL 4 BASIC5□□□□□ -1.61
SKA3Q8IX90 LINC02400-201ENST00000548210 351 ntTSL 2 BASIC5□□□□□ -1.61
SKA3Q8IX90 AC079600.1-201ENST00000550326 297 ntBASIC5□□□□□ -1.61
SKA3Q8IX90 LINC02327-205ENST00000550990 472 ntTSL 3 BASIC5□□□□□ -1.61
SKA3Q8IX90 AC004551.1-201ENST00000552784 575 ntTSL 4 BASIC5□□□□□ -1.61
SKA3Q8IX90 AC092078.1-201ENST00000558370 325 ntTSL 3 BASIC5□□□□□ -1.61
SKA3Q8IX90 DPPA2P4-201ENST00000563717 878 ntBASIC5□□□□□ -1.61
SKA3Q8IX90 AC063977.5-201ENST00000601044 974 ntBASIC5□□□□□ -1.61
SKA3Q8IX90 AC027243.2-201ENST00000602530 724 ntBASIC5□□□□□ -1.61
SKA3Q8IX90 ZNF701-207ENST00000611267 1136 ntTSL 2 BASIC5□□□□□ -1.61
SKA3Q8IX90 AC090607.5-201ENST00000615692 224 ntBASIC5□□□□□ -1.61
SKA3Q8IX90 PIGX-210ENST00000639143 831 ntAPPRIS ALT2 TSL 2 BASIC5□□□□□ -1.61
SKA3Q8IX90 FBXL13-207ENST00000455112 2274 ntTSL 1 (best) BASIC5□□□□□ -1.61
SKA3Q8IX90 USP45-204ENST00000369233 2514 ntTSL 5 BASIC5□□□□□ -1.61
SKA3Q8IX90 ERMN-201ENST00000397283 3760 ntTSL 2 BASIC5□□□□□ -1.61
SKA3Q8IX90 NBPF10-202ENST00000617010 11630 ntTSL 5 BASIC5□□□□□ -1.61
SKA3Q8IX90 ZNF271P-205ENST00000639248 4573 ntTSL 5 BASIC5□□□□□ -1.61
SKA3Q8IX90 PTBP3-207ENST00000458258 7995 ntTSL 1 (best) BASIC5□□□□□ -1.61
SKA3Q8IX90 ZNF559-ZNF177-201ENST00000434737 2340 ntAPPRIS ALT2 TSL 2 BASIC5□□□□□ -1.61
SKA3Q8IX90 GABRG2-217ENST00000639384 5360 ntTSL 5 BASIC5□□□□□ -1.61
SKA3Q8IX90 MIPEPP2-201ENST00000422560 1819 ntBASIC5□□□□□ -1.61
SKA3Q8IX90 HERC4-205ENST00000412272 4211 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
SKA3Q8IX90 UQCRC2P1-201ENST00000417777 1332 ntBASIC4.99□□□□□ -1.61
SKA3Q8IX90 AL355306.2-206ENST00000635233 1903 ntTSL 5 BASIC4.99□□□□□ -1.61
SKA3Q8IX90 AC087667.1-201ENST00000500180 1422 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
SKA3Q8IX90 ITCH-201ENST00000262650 3089 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
SKA3Q8IX90 MEIOB-205ENST00000470044 1857 ntTSL 2 BASIC4.99□□□□□ -1.61
SKA3Q8IX90 DOCK7-211ENST00000634264 6303 ntAPPRIS ALT2 TSL 5 BASIC4.99□□□□□ -1.61
SKA3Q8IX90 CTSV-203ENST00000538255 4322 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
SKA3Q8IX90 LINC00314-201ENST00000324988 607 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
SKA3Q8IX90 OR56A4-201ENST00000330728 1209 ntBASIC4.99□□□□□ -1.61
SKA3Q8IX90 RNA5SP394-201ENST00000364216 119 ntBASIC4.99□□□□□ -1.61
SKA3Q8IX90 RNA5SP510-201ENST00000364697 99 ntBASIC4.99□□□□□ -1.61
SKA3Q8IX90 RNU1-136P-201ENST00000384181 164 ntBASIC4.99□□□□□ -1.61
SKA3Q8IX90 SYCE3-202ENST00000406915 448 ntAPPRIS P1 TSL 2 BASIC4.99□□□□□ -1.61
SKA3Q8IX90 AL445213.1-201ENST00000412589 747 ntBASIC4.99□□□□□ -1.61
SKA3Q8IX90 MIR3681HG-202ENST00000412606 578 ntTSL 5 BASIC4.99□□□□□ -1.61
SKA3Q8IX90 AC087380.1-202ENST00000415970 1163 ntTSL 2 BASIC4.99□□□□□ -1.61
SKA3Q8IX90 VN1R3-201ENST00000418822 919 ntBASIC4.99□□□□□ -1.61
SKA3Q8IX90 RNGTTP1-201ENST00000420965 728 ntBASIC4.99□□□□□ -1.61
SKA3Q8IX90 AC090505.2-201ENST00000427064 464 ntTSL 3 BASIC4.99□□□□□ -1.61
SKA3Q8IX90 TNKS2-AS1-201ENST00000432246 609 ntTSL 2 BASIC4.99□□□□□ -1.61
SKA3Q8IX90 AL139161.2-201ENST00000438371 740 ntTSL 3 BASIC4.99□□□□□ -1.61
SKA3Q8IX90 RPL5P16-201ENST00000471467 790 ntBASIC4.99□□□□□ -1.61
SKA3Q8IX90 TFDP2-211ENST00000479040 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC4.99□□□□□ -1.61
SKA3Q8IX90 RPSAP51-201ENST00000497462 645 ntBASIC4.99□□□□□ -1.61
SKA3Q8IX90 SUMO2P4-201ENST00000504193 276 ntBASIC4.99□□□□□ -1.61
SKA3Q8IX90 PSMA2P2-201ENST00000504319 686 ntBASIC4.99□□□□□ -1.61
SKA3Q8IX90 MTCO3P42-201ENST00000509488 518 ntBASIC4.99□□□□□ -1.61
SKA3Q8IX90 MTCO3P39-201ENST00000514812 518 ntBASIC4.99□□□□□ -1.61
SKA3Q8IX90 SNORD46.2-201ENST00000516021 102 ntBASIC4.99□□□□□ -1.61
SKA3Q8IX90 PKIA-AS1-201ENST00000519242 995 ntTSL 5 BASIC4.99□□□□□ -1.61
SKA3Q8IX90 MAL2-207ENST00000522828 603 ntTSL 3 BASIC4.99□□□□□ -1.61
SKA3Q8IX90 HMGB1P42-201ENST00000532126 553 ntBASIC4.99□□□□□ -1.61
SKA3Q8IX90 AC139697.1-201ENST00000548429 745 ntBASIC4.99□□□□□ -1.61
SKA3Q8IX90 AC090109.1-201ENST00000548885 819 ntTSL 3 BASIC4.99□□□□□ -1.61
SKA3Q8IX90 AL163195.3-202ENST00000555283 578 ntAPPRIS P1 TSL 4 BASIC4.99□□□□□ -1.61
SKA3Q8IX90 AGGF1P7-201ENST00000562369 913 ntBASIC4.99□□□□□ -1.61
SKA3Q8IX90 LINC02563-201ENST00000579474 277 ntTSL 3 BASIC4.99□□□□□ -1.61
SKA3Q8IX90 AP001496.3-201ENST00000580230 913 ntBASIC4.99□□□□□ -1.61
SKA3Q8IX90 DARS-AS1-217ENST00000599279 544 ntTSL 5 BASIC4.99□□□□□ -1.61
SKA3Q8IX90 AC022960.2-201ENST00000616300 666 ntBASIC4.99□□□□□ -1.61
SKA3Q8IX90 MIR6861-201ENST00000618657 64 ntBASIC4.99□□□□□ -1.61
SKA3Q8IX90 SNHG5-214ENST00000623001 598 ntTSL 2 BASIC4.99□□□□□ -1.61
SKA3Q8IX90 AJ239318.1-201ENST00000624445 607 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
SKA3Q8IX90 AL139220.2-221ENST00000628123 395 ntTSL 5 BASIC4.99□□□□□ -1.61
SKA3Q8IX90 AL592430.2-201ENST00000633779 486 ntTSL 5 BASIC4.99□□□□□ -1.61
SKA3Q8IX90 AD000090.1-201ENST00000638356 494 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
SKA3Q8IX90 AC087565.3-203ENST00000641018 837 ntBASIC4.99□□□□□ -1.61
SKA3Q8IX90 OR56A4-203ENST00000641279 1209 ntAPPRIS P1 BASIC4.99□□□□□ -1.61
SKA3Q8IX90 CEP162-207ENST00000617909 5095 ntTSL 5 BASIC4.99□□□□□ -1.61
SKA3Q8IX90 CEACAMP10-201ENST00000489959 1721 ntTSL 2 BASIC4.99□□□□□ -1.61
SKA3Q8IX90 MAP3K7-201ENST00000369320 3328 ntTSL 5 BASIC4.99□□□□□ -1.61
SKA3Q8IX90 DGKH-210ENST00000628433 3449 ntTSL 2 BASIC4.99□□□□□ -1.61
SKA3Q8IX90 RAPGEF4-215ENST00000540783 3974 ntTSL 2 BASIC4.99□□□□□ -1.61
SKA3Q8IX90 PLD1-203ENST00000356327 5855 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
SKA3Q8IX90 LRRN3-204ENST00000451085 3725 ntAPPRIS P1 TSL 2 BASIC4.99□□□□□ -1.61
SKA3Q8IX90 SLC12A6-216ENST00000560164 3744 ntTSL 2 BASIC4.99□□□□□ -1.61
SKA3Q8IX90 NCOA1-206ENST00000407230 4745 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
SKA3Q8IX90 FAM19A1-201ENST00000478136 2014 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
SKA3Q8IX90 AL078621.3-201ENST00000623707 2042 ntBASIC4.99□□□□□ -1.61
SKA3Q8IX90 AP005432.1-201ENST00000580891 3485 ntBASIC4.99□□□□□ -1.61
SKA3Q8IX90 AC006145.1-201ENST00000439234 2651 ntTSL 2 BASIC4.99□□□□□ -1.61
SKA3Q8IX90 ZNF678-201ENST00000343776 8556 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
SKA3Q8IX90 AL022322.2-201ENST00000624072 20397 ntBASIC4.99□□□□□ -1.61
SKA3Q8IX90 CR383656.5-201ENST00000547616 1340 ntBASIC4.98□□□□□ -1.61
SKA3Q8IX90 KLHL28-201ENST00000355081 2177 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
SKA3Q8IX90 GPR87-201ENST00000260843 1608 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
SKA3Q8IX90 SCN11A-202ENST00000444237 5729 ntAPPRIS ALT2 TSL 5 BASIC4.98□□□□□ -1.61
SKA3Q8IX90 DOCK10-202ENST00000409592 7288 ntAPPRIS ALT2 TSL 1 (best) BASIC4.98□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 91.2 ms