Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 AC079944.1-201ENST00000485426 495 ntBASIC7.1□□□□□ -1.27
MSX1P28360 EPGN-204ENST00000502358 312 ntTSL 1 (best) BASIC7.1□□□□□ -1.27
MSX1P28360 EPGN-206ENST00000503098 339 ntTSL 1 (best) BASIC7.1□□□□□ -1.27
MSX1P28360 NIFKP7-201ENST00000503365 834 ntBASIC7.1□□□□□ -1.27
MSX1P28360 AC002460.1-201ENST00000504394 370 ntTSL 3 BASIC7.1□□□□□ -1.27
MSX1P28360 EPGN-207ENST00000505212 285 ntTSL 1 (best) BASIC7.1□□□□□ -1.27
MSX1P28360 RCHY1-206ENST00000507014 650 ntTSL 3 BASIC7.1□□□□□ -1.27
MSX1P28360 GAPDHP61-201ENST00000507324 1005 ntBASIC7.1□□□□□ -1.27
MSX1P28360 EPGN-209ENST00000514968 312 ntTSL 1 (best) BASIC7.1□□□□□ -1.27
MSX1P28360 UQCRB-204ENST00000518406 595 ntTSL 5 BASIC7.1□□□□□ -1.27
MSX1P28360 LINC01608-202ENST00000524283 561 ntTSL 4 BASIC7.1□□□□□ -1.27
MSX1P28360 AAMDC-203ENST00000525034 511 ntTSL 3 BASIC7.1□□□□□ -1.27
MSX1P28360 RGS5-218ENST00000526176 574 ntTSL 4 BASIC7.1□□□□□ -1.27
MSX1P28360 AC103974.1-201ENST00000527285 874 ntTSL 3 BASIC7.1□□□□□ -1.27
MSX1P28360 ACRV1-203ENST00000530048 794 ntAPPRIS ALT2 TSL 3 BASIC7.1□□□□□ -1.27
MSX1P28360 AC090692.1-201ENST00000531569 541 ntTSL 3 BASIC7.1□□□□□ -1.27
MSX1P28360 AL035078.2-201ENST00000533832 326 ntTSL 3 BASIC7.1□□□□□ -1.27
MSX1P28360 AC084361.1-201ENST00000537730 607 ntTSL 3 BASIC7.1□□□□□ -1.27
MSX1P28360 AC006205.2-201ENST00000538943 373 ntTSL 2 BASIC7.1□□□□□ -1.27
MSX1P28360 AC006581.1-201ENST00000545706 496 ntTSL 3 BASIC7.1□□□□□ -1.27
MSX1P28360 MIR4307HG-201ENST00000548170 822 ntTSL 3 BASIC7.1□□□□□ -1.27
MSX1P28360 HIF1AP1-201ENST00000553642 175 ntBASIC7.1□□□□□ -1.27
MSX1P28360 AC013489.1-201ENST00000561140 598 ntTSL 3 BASIC7.1□□□□□ -1.27
MSX1P28360 AC090826.1-201ENST00000564109 915 ntTSL 2 BASIC7.1□□□□□ -1.27
MSX1P28360 AL163952.1-202ENST00000569625 600 ntBASIC7.1□□□□□ -1.27
MSX1P28360 AC009977.1-201ENST00000586015 570 ntBASIC7.1□□□□□ -1.27
MSX1P28360 TCF4-AS2-201ENST00000586467 445 ntTSL 2 BASIC7.1□□□□□ -1.27
MSX1P28360 AC008770.1-209ENST00000591898 356 ntTSL 3 BASIC7.1□□□□□ -1.27
MSX1P28360 RPL12P25-202ENST00000598100 674 ntBASIC7.1□□□□□ -1.27
MSX1P28360 AC112493.1-201ENST00000609836 303 ntTSL 3 BASIC7.1□□□□□ -1.27
MSX1P28360 AC005332.6-201ENST00000613178 446 ntBASIC7.1□□□□□ -1.27
MSX1P28360 AP005242.3-201ENST00000623604 607 ntTSL 1 (best) BASIC7.1□□□□□ -1.27
MSX1P28360 KLRD1-203ENST00000350274 3165 ntAPPRIS ALT2 TSL 1 (best) BASIC7.1□□□□□ -1.27
MSX1P28360 TRIM42-201ENST00000286349 2539 ntAPPRIS P1 TSL 1 (best) BASIC7.1□□□□□ -1.27
MSX1P28360 P2RY14-201ENST00000309170 2513 ntAPPRIS P1 TSL 1 (best) BASIC7.1□□□□□ -1.27
MSX1P28360 NPM1-203ENST00000393820 1598 ntTSL 1 (best) BASIC7.1□□□□□ -1.27
MSX1P28360 ZNF735-201ENST00000429565 1570 ntAPPRIS P1 TSL 5 BASIC7.1□□□□□ -1.27
MSX1P28360 GPI-202ENST00000415930 4000 ntTSL 2 BASIC7.1□□□□□ -1.27
MSX1P28360 VCAM1-204ENST00000370119 2483 ntTSL 2 BASIC7.1□□□□□ -1.27
MSX1P28360 ZNF225-201ENST00000262894 4482 ntAPPRIS P1 TSL 1 (best) BASIC7.1□□□□□ -1.27
MSX1P28360 WNK3-201ENST00000354646 11341 ntAPPRIS P3 TSL 1 (best) BASIC7.1□□□□□ -1.27
MSX1P28360 FAM47C-201ENST00000358047 3270 ntAPPRIS P1 BASIC7.1□□□□□ -1.27
MSX1P28360 DAPP1-201ENST00000296414 2955 ntAPPRIS ALT1 TSL 1 (best) BASIC7.1□□□□□ -1.27
MSX1P28360 CCDC150-201ENST00000389175 3685 ntAPPRIS P2 TSL 5 BASIC7.09□□□□□ -1.27
MSX1P28360 TIMM21-204ENST00000580087 2524 ntTSL 5 BASIC7.09□□□□□ -1.27
MSX1P28360 AC003985.2-201ENST00000562268 1669 ntBASIC7.09□□□□□ -1.27
MSX1P28360 CDH12-202ENST00000504376 4160 ntAPPRIS P1 TSL 5 BASIC7.09□□□□□ -1.27
MSX1P28360 CTNND1-233ENST00000532787 5751 ntTSL 1 (best) BASIC7.09□□□□□ -1.27
MSX1P28360 LINC01630-208ENST00000635680 4363 ntTSL 5 BASIC7.09□□□□□ -1.27
MSX1P28360 PIGN-225ENST00000638435 4382 ntTSL 5 BASIC7.09□□□□□ -1.27
MSX1P28360 PTPN14-205ENST00000543945 3842 ntTSL 5 BASIC7.09□□□□□ -1.27
MSX1P28360 DDX24-201ENST00000330836 2738 ntTSL 1 (best) BASIC7.09□□□□□ -1.27
MSX1P28360 ITPR1-205ENST00000456211 9717 ntTSL 1 (best) BASIC7.09□□□□□ -1.27
MSX1P28360 LINC00689-203ENST00000438049 3946 ntTSL 1 (best) BASIC7.09□□□□□ -1.27
MSX1P28360 MS4A7-202ENST00000358246 2871 ntTSL 3 BASIC7.09□□□□□ -1.27
MSX1P28360 POTEH-AS1-201ENST00000422014 2566 ntTSL 1 (best) BASIC7.09□□□□□ -1.27
MSX1P28360 TNPO3-204ENST00000482320 3585 ntTSL 1 (best) BASIC7.09□□□□□ -1.27
MSX1P28360 INSL5-201ENST00000304526 715 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.27
MSX1P28360 RPL23AP29-201ENST00000397284 453 ntBASIC7.09□□□□□ -1.27
MSX1P28360 AL451061.1-201ENST00000407887 862 ntBASIC7.09□□□□□ -1.27
MSX1P28360 RPL12P9-201ENST00000412942 488 ntBASIC7.09□□□□□ -1.27
MSX1P28360 JKAMPP1-201ENST00000413804 919 ntBASIC7.09□□□□□ -1.27
MSX1P28360 LINC01980-201ENST00000414382 543 ntTSL 4 BASIC7.09□□□□□ -1.27
MSX1P28360 AC231533.2-201ENST00000419045 978 ntBASIC7.09□□□□□ -1.27
MSX1P28360 AC023141.1-201ENST00000419418 379 ntBASIC7.09□□□□□ -1.27
MSX1P28360 AL353608.1-201ENST00000419576 416 ntTSL 5 BASIC7.09□□□□□ -1.27
MSX1P28360 MED15P9-201ENST00000424716 533 ntBASIC7.09□□□□□ -1.27
MSX1P28360 AC127526.2-201ENST00000426436 775 ntBASIC7.09□□□□□ -1.27
MSX1P28360 BX890604.2-201ENST00000427883 474 ntBASIC7.09□□□□□ -1.27
MSX1P28360 FCF1P1-201ENST00000432690 571 ntBASIC7.09□□□□□ -1.27
MSX1P28360 AC002486.1-201ENST00000435098 391 ntBASIC7.09□□□□□ -1.27
MSX1P28360 FO393419.1-201ENST00000443746 355 ntBASIC7.09□□□□□ -1.27
MSX1P28360 AC073486.1-201ENST00000453278 531 ntTSL 5 BASIC7.09□□□□□ -1.27
MSX1P28360 DNAJB5P1-201ENST00000454004 806 ntBASIC7.09□□□□□ -1.27
MSX1P28360 AC233279.1-201ENST00000455300 423 ntBASIC7.09□□□□□ -1.27
MSX1P28360 RN7SL282P-201ENST00000479676 297 ntBASIC7.09□□□□□ -1.27
MSX1P28360 ACTR3P3-201ENST00000480448 893 ntBASIC7.09□□□□□ -1.27
MSX1P28360 THAP6-203ENST00000502620 582 ntTSL 3 BASIC7.09□□□□□ -1.27
MSX1P28360 AC093523.1-201ENST00000503268 499 ntTSL 3 BASIC7.09□□□□□ -1.27
MSX1P28360 AC233724.1-201ENST00000503894 233 ntBASIC7.09□□□□□ -1.27
MSX1P28360 AC108064.1-201ENST00000513791 460 ntBASIC7.09□□□□□ -1.27
MSX1P28360 MTND6P19-201ENST00000519399 524 ntBASIC7.09□□□□□ -1.27
MSX1P28360 AC008415.1-201ENST00000522189 734 ntTSL 5 BASIC7.09□□□□□ -1.27
MSX1P28360 AP001636.3-202ENST00000525714 894 ntTSL 3 BASIC7.09□□□□□ -1.27
MSX1P28360 CASP1-206ENST00000526568 1061 ntTSL 1 (best) BASIC7.09□□□□□ -1.27
MSX1P28360 AP001994.1-201ENST00000527539 826 ntBASIC7.09□□□□□ -1.27
MSX1P28360 CASP1-216ENST00000534497 825 ntTSL 5 BASIC7.09□□□□□ -1.27
MSX1P28360 AC008013.2-201ENST00000537555 348 ntTSL 5 BASIC7.09□□□□□ -1.27
MSX1P28360 AC079313.2-201ENST00000550474 564 ntTSL 4 BASIC7.09□□□□□ -1.27
MSX1P28360 NUTF2P2-201ENST00000551207 384 ntBASIC7.09□□□□□ -1.27
MSX1P28360 AC068643.2-202ENST00000552759 622 ntTSL 3 BASIC7.09□□□□□ -1.27
MSX1P28360 AL352984.1-201ENST00000556949 276 ntTSL 3 BASIC7.09□□□□□ -1.27
MSX1P28360 AC026464.1-202ENST00000564737 722 ntAPPRIS P5 TSL 5 BASIC7.09□□□□□ -1.27
MSX1P28360 MIR3668-201ENST00000582138 75 ntBASIC7.09□□□□□ -1.27
MSX1P28360 ZNF675-202ENST00000596211 581 ntTSL 4 BASIC7.09□□□□□ -1.27
MSX1P28360 AL136363.1-201ENST00000605349 337 ntBASIC7.09□□□□□ -1.27
MSX1P28360 AL391425.1-201ENST00000613658 807 ntTSL 5 BASIC7.09□□□□□ -1.27
MSX1P28360 U6.107-201ENST00000637108 79 ntBASIC7.09□□□□□ -1.27
MSX1P28360 OR10G8-202ENST00000641224 1033 ntAPPRIS P1 BASIC7.09□□□□□ -1.27
MSX1P28360 MTFR2-205ENST00000451457 1524 ntAPPRIS P2 TSL 1 (best) BASIC7.09□□□□□ -1.27
Retrieved 100 of 98,524 protein–RNA pairs in 85.4 ms