Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 RPL35AP19-201ENST00000469425 329 ntBASIC5.57□□□□□ -1.52
CCDC3Q9BQI4 OR2AO1P-201ENST00000476497 403 ntBASIC5.57□□□□□ -1.52
CCDC3Q9BQI4 RN7SL547P-201ENST00000490793 290 ntBASIC5.57□□□□□ -1.52
CCDC3Q9BQI4 AGGF1P3-201ENST00000493675 1213 ntBASIC5.57□□□□□ -1.52
CCDC3Q9BQI4 AC114954.1-201ENST00000506656 820 ntTSL 3 BASIC5.57□□□□□ -1.52
CCDC3Q9BQI4 MOCS2-205ENST00000508922 1210 ntTSL 5 BASIC5.57□□□□□ -1.52
CCDC3Q9BQI4 SUMO2P19-201ENST00000518920 295 ntBASIC5.57□□□□□ -1.52
CCDC3Q9BQI4 NRBF2P4-201ENST00000520874 850 ntBASIC5.57□□□□□ -1.52
CCDC3Q9BQI4 AP001972.1-201ENST00000529215 506 ntTSL 2 BASIC5.57□□□□□ -1.52
CCDC3Q9BQI4 AC134511.1-201ENST00000535721 192 ntTSL 3 BASIC5.57□□□□□ -1.52
CCDC3Q9BQI4 GPRC5D-AS1-205ENST00000540198 404 ntTSL 5 BASIC5.57□□□□□ -1.52
CCDC3Q9BQI4 AL161752.1-201ENST00000557721 263 ntTSL 2 BASIC5.57□□□□□ -1.52
CCDC3Q9BQI4 AC011270.1-201ENST00000558606 583 ntBASIC5.57□□□□□ -1.52
CCDC3Q9BQI4 RBM22P12-201ENST00000567098 1255 ntBASIC5.57□□□□□ -1.52
CCDC3Q9BQI4 LYRM1-211ENST00000569023 769 ntAPPRIS P1 TSL 3 BASIC5.57□□□□□ -1.52
CCDC3Q9BQI4 AC074050.3-201ENST00000569175 441 ntTSL 4 BASIC5.57□□□□□ -1.52
CCDC3Q9BQI4 AC010401.3-201ENST00000576600 582 ntTSL 4 BASIC5.57□□□□□ -1.52
CCDC3Q9BQI4 AC245128.3-201ENST00000594721 748 ntBASIC5.57□□□□□ -1.52
CCDC3Q9BQI4 IMMP1LP3-201ENST00000604197 224 ntBASIC5.57□□□□□ -1.52
CCDC3Q9BQI4 AF117829.2-201ENST00000619538 361 ntBASIC5.57□□□□□ -1.52
CCDC3Q9BQI4 LINC01320-210ENST00000626008 929 ntTSL 5 BASIC5.57□□□□□ -1.52
CCDC3Q9BQI4 DAOA-212ENST00000640578 378 ntAPPRIS ALT2 TSL 5 BASIC5.57□□□□□ -1.52
CCDC3Q9BQI4 PPP2R5E-202ENST00000422769 3478 ntTSL 2 BASIC5.57□□□□□ -1.52
CCDC3Q9BQI4 ASAH1-232ENST00000636691 2472 ntTSL 5 BASIC5.57□□□□□ -1.52
CCDC3Q9BQI4 SGIP1-201ENST00000237247 3997 ntAPPRIS ALT2 TSL 5 BASIC5.57□□□□□ -1.52
CCDC3Q9BQI4 KMO-202ENST00000366557 4888 ntAPPRIS ALT2 TSL 5 BASIC5.57□□□□□ -1.52
CCDC3Q9BQI4 PTPRC-209ENST00000442510 5164 ntAPPRIS P4 TSL 1 (best) BASIC5.57□□□□□ -1.52
CCDC3Q9BQI4 IQCM-205ENST00000636414 1844 ntAPPRIS ALT2 TSL 5 BASIC5.57□□□□□ -1.52
CCDC3Q9BQI4 MAGI2-205ENST00000519748 3316 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
CCDC3Q9BQI4 LINC01504-201ENST00000436054 2078 ntTSL 2 BASIC5.57□□□□□ -1.52
CCDC3Q9BQI4 FAM197Y8-201ENST00000426661 2340 ntTSL 2 BASIC5.57□□□□□ -1.52
CCDC3Q9BQI4 FAM197Y6-202ENST00000442145 2340 ntTSL 2 BASIC5.57□□□□□ -1.52
CCDC3Q9BQI4 AP000432.2-201ENST00000624164 2048 ntBASIC5.57□□□□□ -1.52
CCDC3Q9BQI4 ZNF160-203ENST00000429604 4336 ntAPPRIS P1 TSL 3 BASIC5.57□□□□□ -1.52
CCDC3Q9BQI4 LINC00906-206ENST00000589921 3444 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
CCDC3Q9BQI4 CASC8-203ENST00000502082 1420 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
CCDC3Q9BQI4 LINC02261-201ENST00000512873 2802 ntTSL 2 BASIC5.56□□□□□ -1.52
CCDC3Q9BQI4 HGF-205ENST00000423064 1990 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
CCDC3Q9BQI4 GPR18-201ENST00000340807 1698 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
CCDC3Q9BQI4 STXBP4-203ENST00000405898 2229 ntTSL 5 BASIC5.56□□□□□ -1.52
CCDC3Q9BQI4 ZNF480-204ENST00000490272 2238 ntTSL 2 BASIC5.56□□□□□ -1.52
CCDC3Q9BQI4 MDM2-201ENST00000258148 1361 ntAPPRIS ALT2 TSL 1 (best) BASIC5.56□□□□□ -1.52
CCDC3Q9BQI4 FOXP2-217ENST00000462331 1388 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
CCDC3Q9BQI4 DST-220ENST00000518935 3547 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
CCDC3Q9BQI4 BTLA-201ENST00000334529 3213 ntAPPRIS P3 TSL 1 (best) BASIC5.56□□□□□ -1.52
CCDC3Q9BQI4 FBXL21-201ENST00000297158 1305 ntBASIC5.56□□□□□ -1.52
CCDC3Q9BQI4 C6orf163-202ENST00000388923 1308 ntAPPRIS P1 TSL 5 BASIC5.56□□□□□ -1.52
CCDC3Q9BQI4 AC235565.1-201ENST00000456962 1325 ntBASIC5.56□□□□□ -1.52
CCDC3Q9BQI4 VCAM1-201ENST00000294728 3083 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
CCDC3Q9BQI4 SNORA74A-201ENST00000364089 198 ntBASIC5.56□□□□□ -1.52
CCDC3Q9BQI4 RNU1-59P-201ENST00000364829 162 ntBASIC5.56□□□□□ -1.52
CCDC3Q9BQI4 RNU6-171P-201ENST00000384354 107 ntBASIC5.56□□□□□ -1.52
CCDC3Q9BQI4 CLUHP1-201ENST00000435012 1190 ntBASIC5.56□□□□□ -1.52
CCDC3Q9BQI4 RPS3AP38-201ENST00000435889 763 ntBASIC5.56□□□□□ -1.52
CCDC3Q9BQI4 LINC02038-201ENST00000439074 702 ntTSL 4 BASIC5.56□□□□□ -1.52
CCDC3Q9BQI4 AC015983.1-201ENST00000441577 373 ntBASIC5.56□□□□□ -1.52
CCDC3Q9BQI4 LINC01344-202ENST00000449842 571 ntTSL 3 BASIC5.56□□□□□ -1.52
CCDC3Q9BQI4 LINC01448-201ENST00000455947 1171 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
CCDC3Q9BQI4 HMGN1P8-201ENST00000463578 288 ntBASIC5.56□□□□□ -1.52
CCDC3Q9BQI4 AC100832.1-201ENST00000471945 383 ntBASIC5.56□□□□□ -1.52
CCDC3Q9BQI4 COPS8P2-201ENST00000473228 627 ntBASIC5.56□□□□□ -1.52
CCDC3Q9BQI4 RPS3AP15-201ENST00000483874 781 ntBASIC5.56□□□□□ -1.52
CCDC3Q9BQI4 AC145141.1-201ENST00000510180 567 ntTSL 4 BASIC5.56□□□□□ -1.52
CCDC3Q9BQI4 AC122710.1-201ENST00000510622 553 ntTSL 5 BASIC5.56□□□□□ -1.52
CCDC3Q9BQI4 RNU6-943P-201ENST00000516960 98 ntBASIC5.56□□□□□ -1.52
CCDC3Q9BQI4 NSMCE2-202ENST00000517315 996 ntTSL 3 BASIC5.56□□□□□ -1.52
CCDC3Q9BQI4 IGHVIII-47-1-201ENST00000518187 331 ntBASIC5.56□□□□□ -1.52
CCDC3Q9BQI4 AP003080.1-202ENST00000526526 915 ntBASIC5.56□□□□□ -1.52
CCDC3Q9BQI4 AC134775.1-201ENST00000531268 464 ntTSL 2 BASIC5.56□□□□□ -1.52
CCDC3Q9BQI4 CREBZF-209ENST00000534224 545 ntTSL 4 BASIC5.56□□□□□ -1.52
CCDC3Q9BQI4 AC105339.2-201ENST00000558342 1091 ntTSL 3 BASIC5.56□□□□□ -1.52
CCDC3Q9BQI4 AC015720.2-201ENST00000567709 334 ntBASIC5.56□□□□□ -1.52
CCDC3Q9BQI4 AC073254.1-207ENST00000600482 714 ntTSL 5 BASIC5.56□□□□□ -1.52
CCDC3Q9BQI4 AC063977.5-201ENST00000601044 974 ntBASIC5.56□□□□□ -1.52
CCDC3Q9BQI4 U1.25-201ENST00000614085 162 ntBASIC5.56□□□□□ -1.52
CCDC3Q9BQI4 U1.34-201ENST00000618578 162 ntBASIC5.56□□□□□ -1.52
CCDC3Q9BQI4 AC005840.5-201ENST00000619166 599 ntBASIC5.56□□□□□ -1.52
CCDC3Q9BQI4 U1.31-201ENST00000620022 160 ntBASIC5.56□□□□□ -1.52
CCDC3Q9BQI4 MIR8080-201ENST00000622224 89 ntBASIC5.56□□□□□ -1.52
CCDC3Q9BQI4 AL353684.1-201ENST00000622677 1120 ntBASIC5.56□□□□□ -1.52
CCDC3Q9BQI4 PDE4D-229ENST00000638939 375 ntTSL 5 BASIC5.56□□□□□ -1.52
CCDC3Q9BQI4 GRIA4-204ENST00000428631 2778 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
CCDC3Q9BQI4 ZNF23-207ENST00000564528 3020 ntAPPRIS ALT2 TSL 2 BASIC5.56□□□□□ -1.52
CCDC3Q9BQI4 MAP3K19-204ENST00000392915 5030 ntAPPRIS P3 TSL 5 BASIC5.56□□□□□ -1.52
CCDC3Q9BQI4 TMPRSS11BNL-202ENST00000510782 3202 ntTSL 2 BASIC5.56□□□□□ -1.52
CCDC3Q9BQI4 EPPIN-202ENST00000354280 1987 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
CCDC3Q9BQI4 ALB-209ENST00000503124 1741 ntTSL 5 BASIC5.56□□□□□ -1.52
CCDC3Q9BQI4 LINC02183-201ENST00000637822 1732 ntTSL 5 BASIC5.56□□□□□ -1.52
CCDC3Q9BQI4 LNPK-212ENST00000544803 7647 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
CCDC3Q9BQI4 AL034546.1-201ENST00000623740 3693 ntBASIC5.56□□□□□ -1.52
CCDC3Q9BQI4 PHACTR2-207ENST00000427704 9531 ntAPPRIS ALT2 TSL 1 (best) BASIC5.56□□□□□ -1.52
CCDC3Q9BQI4 CACNB4-243ENST00000637217 8188 ntTSL 5 BASIC5.56□□□□□ -1.52
CCDC3Q9BQI4 LRRN3-204ENST00000451085 3725 ntAPPRIS P1 TSL 2 BASIC5.56□□□□□ -1.52
CCDC3Q9BQI4 CD86-204ENST00000469710 1604 ntTSL 2 BASIC5.56□□□□□ -1.52
CCDC3Q9BQI4 C9orf135-AS1-201ENST00000439418 1375 ntTSL 2 BASIC5.55□□□□□ -1.52
CCDC3Q9BQI4 GRIA2-202ENST00000296526 5621 ntAPPRIS P3 TSL 1 (best) BASIC5.55□□□□□ -1.52
CCDC3Q9BQI4 NOL8-214ENST00000535387 3390 ntAPPRIS ALT2 TSL 5 BASIC5.55□□□□□ -1.52
CCDC3Q9BQI4 AC011503.1-201ENST00000596326 1585 ntTSL 2 BASIC5.55□□□□□ -1.52
CCDC3Q9BQI4 AC005225.5-201ENST00000623547 2225 ntBASIC5.55□□□□□ -1.52
CCDC3Q9BQI4 TRIM51-201ENST00000244891 1329 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 99.8 ms