Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 AC108866.1-204ENST00000508362 558 ntTSL 4 BASIC6.36□□□□□ -1.39
USP39Q53GS9 AF213884.2-201ENST00000510417 903 ntBASIC6.36□□□□□ -1.39
USP39Q53GS9 AC011352.1-201ENST00000512300 793 ntBASIC6.36□□□□□ -1.39
USP39Q53GS9 AC111000.6-201ENST00000514471 709 ntBASIC6.36□□□□□ -1.39
USP39Q53GS9 MTND1P5-201ENST00000517906 940 ntBASIC6.36□□□□□ -1.39
USP39Q53GS9 TEK-204ENST00000519097 3836 ntTSL 2 BASIC6.36□□□□□ -1.39
USP39Q53GS9 AC010609.1-201ENST00000519375 569 ntTSL 3 BASIC6.36□□□□□ -1.39
USP39Q53GS9 LINC02553-201ENST00000529088 734 ntTSL 5 BASIC6.36□□□□□ -1.39
USP39Q53GS9 AC005832.1-201ENST00000544380 572 ntTSL 4 BASIC6.36□□□□□ -1.39
USP39Q53GS9 LINC02325-202ENST00000554260 567 ntTSL 4 BASIC6.36□□□□□ -1.39
USP39Q53GS9 LINC01580-202ENST00000555364 661 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
USP39Q53GS9 AL049869.2-201ENST00000556634 365 ntTSL 2 BASIC6.36□□□□□ -1.39
USP39Q53GS9 AC087463.4-202ENST00000566676 579 ntTSL 3 BASIC6.36□□□□□ -1.39
USP39Q53GS9 AP005120.1-201ENST00000579321 352 ntTSL 3 BASIC6.36□□□□□ -1.39
USP39Q53GS9 NPM1P45-201ENST00000583151 559 ntBASIC6.36□□□□□ -1.39
USP39Q53GS9 AC090616.1-201ENST00000583895 447 ntBASIC6.36□□□□□ -1.39
USP39Q53GS9 AC008543.4-201ENST00000585694 442 ntTSL 2 BASIC6.36□□□□□ -1.39
USP39Q53GS9 AC005332.4-201ENST00000592752 579 ntBASIC6.36□□□□□ -1.39
USP39Q53GS9 AL606834.3-201ENST00000602615 496 ntBASIC6.36□□□□□ -1.39
USP39Q53GS9 AC073333.2-201ENST00000603589 769 ntBASIC6.36□□□□□ -1.39
USP39Q53GS9 AP001823.1-201ENST00000604056 1003 ntBASIC6.36□□□□□ -1.39
USP39Q53GS9 LINC01320-205ENST00000604250 857 ntTSL 5 BASIC6.36□□□□□ -1.39
USP39Q53GS9 AC008555.7-201ENST00000605008 583 ntBASIC6.36□□□□□ -1.39
USP39Q53GS9 AC018638.7-201ENST00000605836 1114 ntBASIC6.36□□□□□ -1.39
USP39Q53GS9 AC012254.5-201ENST00000623573 478 ntBASIC6.36□□□□□ -1.39
USP39Q53GS9 OR5D13-201ENST00000623930 945 ntAPPRIS P1 BASIC6.36□□□□□ -1.39
USP39Q53GS9 PLEKHA1-205ENST00000433307 3704 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
USP39Q53GS9 LINC01981-201ENST00000432163 2833 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
USP39Q53GS9 TMEM209-201ENST00000397622 3545 ntAPPRIS P2 TSL 1 (best) BASIC6.36□□□□□ -1.39
USP39Q53GS9 ZNF644-204ENST00000370440 5702 ntAPPRIS P1 TSL 5 BASIC6.36□□□□□ -1.39
USP39Q53GS9 AL136984.1-201ENST00000607611 1893 ntBASIC6.36□□□□□ -1.39
USP39Q53GS9 ATP8B5P-203ENST00000430846 3962 ntTSL 2 BASIC6.36□□□□□ -1.39
USP39Q53GS9 IARS-213ENST00000627121 4587 ntTSL 5 BASIC6.36□□□□□ -1.39
USP39Q53GS9 KCNJ1-203ENST00000392664 1674 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
USP39Q53GS9 AC062022.1-201ENST00000451026 1684 ntBASIC6.36□□□□□ -1.39
USP39Q53GS9 DNAH3-201ENST00000261383 12394 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
USP39Q53GS9 RPL23AP82-206ENST00000480246 2987 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
USP39Q53GS9 LINS1-214ENST00000561308 1612 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
USP39Q53GS9 ABCB5-203ENST00000406935 1483 ntTSL 2 BASIC6.35□□□□□ -1.39
USP39Q53GS9 C16orf62-202ENST00000417362 3115 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
USP39Q53GS9 EEF1A1P24-201ENST00000451469 1378 ntBASIC6.35□□□□□ -1.39
USP39Q53GS9 FOXP2-217ENST00000462331 1388 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
USP39Q53GS9 AC016747.4-201ENST00000462959 1383 ntTSL 2 BASIC6.35□□□□□ -1.39
USP39Q53GS9 OPRM1-217ENST00000522236 2459 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
USP39Q53GS9 WBP11P1-201ENST00000562560 1931 ntBASIC6.35□□□□□ -1.39
USP39Q53GS9 YTHDC1-207ENST00000579690 2983 ntAPPRIS ALT2 TSL 5 BASIC6.35□□□□□ -1.39
USP39Q53GS9 LPAR6-201ENST00000345941 2428 ntAPPRIS P1 TSL 2 BASIC6.35□□□□□ -1.39
USP39Q53GS9 MYO3B-202ENST00000408978 5529 ntAPPRIS P3 TSL 1 (best) BASIC6.35□□□□□ -1.39
USP39Q53GS9 TMED3-202ENST00000424155 16555 ntTSL 3 BASIC6.35□□□□□ -1.39
USP39Q53GS9 RNA5SP346-201ENST00000363541 121 ntBASIC6.35□□□□□ -1.39
USP39Q53GS9 SNORA27.3-201ENST00000364937 134 ntBASIC6.35□□□□□ -1.39
USP39Q53GS9 Y_RNA.436-201ENST00000384097 102 ntBASIC6.35□□□□□ -1.39
USP39Q53GS9 RNA5SP284-201ENST00000384547 118 ntBASIC6.35□□□□□ -1.39
USP39Q53GS9 OR8V1P-201ENST00000395193 873 ntBASIC6.35□□□□□ -1.39
USP39Q53GS9 AC119751.3-201ENST00000399720 670 ntBASIC6.35□□□□□ -1.39
USP39Q53GS9 MYL12B-202ENST00000400175 1025 ntAPPRIS P1 TSL 3 BASIC6.35□□□□□ -1.39
USP39Q53GS9 MTATP6P20-201ENST00000414147 562 ntBASIC6.35□□□□□ -1.39
USP39Q53GS9 AC011754.1-201ENST00000415201 491 ntTSL 5 BASIC6.35□□□□□ -1.39
USP39Q53GS9 RPL12P12-201ENST00000424633 501 ntBASIC6.35□□□□□ -1.39
USP39Q53GS9 AC006055.1-201ENST00000432423 411 ntTSL 3 BASIC6.35□□□□□ -1.39
USP39Q53GS9 MRPS21P3-201ENST00000436696 262 ntBASIC6.35□□□□□ -1.39
USP39Q53GS9 BMS1P22-202ENST00000440946 1160 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
USP39Q53GS9 AC093581.1-201ENST00000446411 461 ntTSL 2 BASIC6.35□□□□□ -1.39
USP39Q53GS9 AL157400.3-201ENST00000449882 1298 ntTSL 5 BASIC6.35□□□□□ -1.39
USP39Q53GS9 CFL1P4-201ENST00000451536 498 ntBASIC6.35□□□□□ -1.39
USP39Q53GS9 AL358612.1-201ENST00000452911 481 ntTSL 3 BASIC6.35□□□□□ -1.39
USP39Q53GS9 AL160162.1-201ENST00000456715 442 ntTSL 3 BASIC6.35□□□□□ -1.39
USP39Q53GS9 MTCO3P35-201ENST00000485582 781 ntBASIC6.35□□□□□ -1.39
USP39Q53GS9 CLEC19A-204ENST00000493231 557 ntTSL 3 BASIC6.35□□□□□ -1.39
USP39Q53GS9 TMED11P-203ENST00000502630 533 ntTSL 5 BASIC6.35□□□□□ -1.39
USP39Q53GS9 MTND6P8-201ENST00000503471 522 ntBASIC6.35□□□□□ -1.39
USP39Q53GS9 LINC02465-201ENST00000507099 532 ntTSL 4 BASIC6.35□□□□□ -1.39
USP39Q53GS9 AC021193.1-201ENST00000511607 420 ntBASIC6.35□□□□□ -1.39
USP39Q53GS9 SNHG27-203ENST00000514222 680 ntTSL 3 BASIC6.35□□□□□ -1.39
USP39Q53GS9 RNA5SP340-201ENST00000517132 107 ntBASIC6.35□□□□□ -1.39
USP39Q53GS9 AC090155.1-201ENST00000520800 407 ntTSL 3 BASIC6.35□□□□□ -1.39
USP39Q53GS9 AC010376.1-201ENST00000522101 334 ntBASIC6.35□□□□□ -1.39
USP39Q53GS9 TMEM68-213ENST00000522576 826 ntTSL 2 BASIC6.35□□□□□ -1.39
USP39Q53GS9 AC108471.2-204ENST00000526807 784 ntTSL 5 BASIC6.35□□□□□ -1.39
USP39Q53GS9 LINC02366-202ENST00000541949 696 ntTSL 3 BASIC6.35□□□□□ -1.39
USP39Q53GS9 TMEM191C-213ENST00000545656 574 ntAPPRIS ALT2 BASIC6.35□□□□□ -1.39
USP39Q53GS9 LINC02399-201ENST00000547094 400 ntTSL 2 BASIC6.35□□□□□ -1.39
USP39Q53GS9 AC009097.3-201ENST00000563557 1018 ntBASIC6.35□□□□□ -1.39
USP39Q53GS9 AC135050.4-201ENST00000568708 504 ntTSL 5 BASIC6.35□□□□□ -1.39
USP39Q53GS9 AC016839.1-201ENST00000578162 867 ntBASIC6.35□□□□□ -1.39
USP39Q53GS9 AC135178.3-202ENST00000580537 579 ntTSL 3 BASIC6.35□□□□□ -1.39
USP39Q53GS9 AC011497.2-201ENST00000600255 639 ntBASIC6.35□□□□□ -1.39
USP39Q53GS9 IGLVIVOR22-1-201ENST00000603243 397 ntBASIC6.35□□□□□ -1.39
USP39Q53GS9 AC119501.1-201ENST00000603646 475 ntBASIC6.35□□□□□ -1.39
USP39Q53GS9 AL160237.3-201ENST00000604114 1013 ntBASIC6.35□□□□□ -1.39
USP39Q53GS9 AC091193.1-201ENST00000604640 448 ntBASIC6.35□□□□□ -1.39
USP39Q53GS9 AL139344.1-201ENST00000605228 195 ntBASIC6.35□□□□□ -1.39
USP39Q53GS9 MIR4500HG-205ENST00000606590 579 ntTSL 4 BASIC6.35□□□□□ -1.39
USP39Q53GS9 RNU4-5P-201ENST00000607255 135 ntBASIC6.35□□□□□ -1.39
USP39Q53GS9 AC108673.3-201ENST00000609183 335 ntBASIC6.35□□□□□ -1.39
USP39Q53GS9 DAOA-AS1_1.1-201ENST00000613021 201 ntBASIC6.35□□□□□ -1.39
USP39Q53GS9 VN1R9P-201ENST00000614184 867 ntBASIC6.35□□□□□ -1.39
USP39Q53GS9 TFG-209ENST00000615993 1244 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
USP39Q53GS9 CCL4-203ENST00000621626 552 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
USP39Q53GS9 ATXN3L-202ENST00000622204 837 ntTSL 5 BASIC6.35□□□□□ -1.39
Retrieved 100 of 98,524 protein–RNA pairs in 113.8 ms