Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 MIR4302-201ENST00000638058 60 ntBASIC5.31□□□□□ -1.56
SOX3P41225 LINC01676-202ENST00000435253 1849 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
SOX3P41225 CABS1-201ENST00000273936 1532 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
SOX3P41225 CEP85L-201ENST00000360290 1736 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
SOX3P41225 ZNF33A-202ENST00000374618 6122 ntTSL 4 BASIC5.31□□□□□ -1.56
SOX3P41225 ZNF630-202ENST00000409324 2455 ntAPPRIS P2 TSL 1 (best) BASIC5.31□□□□□ -1.56
SOX3P41225 LINC01958-201ENST00000637749 1941 ntTSL 5 BASIC5.31□□□□□ -1.56
SOX3P41225 GTDC1-201ENST00000241391 2356 ntTSL 2 BASIC5.3□□□□□ -1.56
SOX3P41225 RXFP1-203ENST00000343542 2130 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
SOX3P41225 TRPM3-209ENST00000377110 12258 ntAPPRIS ALT1 TSL 1 (best) BASIC5.3□□□□□ -1.56
SOX3P41225 IBTK-206ENST00000503631 3560 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
SOX3P41225 FBXO38-218ENST00000513826 3585 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
SOX3P41225 ZNF214-204ENST00000536068 2562 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
SOX3P41225 CPS1-IT1-201ENST00000628368 2306 ntBASIC5.3□□□□□ -1.56
SOX3P41225 ZNF721-201ENST00000338977 4492 ntTSL 2 BASIC5.3□□□□□ -1.56
SOX3P41225 AC007842.1-201ENST00000597336 2039 ntBASIC5.3□□□□□ -1.56
SOX3P41225 AP4S1-212ENST00000622409 4113 ntAPPRIS P1 TSL 3 BASIC5.3□□□□□ -1.56
SOX3P41225 AP000473.2-201ENST00000602659 1537 ntBASIC5.3□□□□□ -1.56
SOX3P41225 ITGB3BP-201ENST00000271002 948 ntAPPRIS P3 TSL 1 (best) BASIC5.3□□□□□ -1.56
SOX3P41225 AL159987.1-201ENST00000347911 293 ntBASIC5.3□□□□□ -1.56
SOX3P41225 MIR323A-201ENST00000362199 86 ntBASIC5.3□□□□□ -1.56
SOX3P41225 RNA5SP242-201ENST00000364171 118 ntBASIC5.3□□□□□ -1.56
SOX3P41225 SMARCA2-207ENST00000382186 955 ntTSL 3 BASIC5.3□□□□□ -1.56
SOX3P41225 MIR323B-201ENST00000385269 82 ntBASIC5.3□□□□□ -1.56
SOX3P41225 RN7SKP206-201ENST00000410823 293 ntBASIC5.3□□□□□ -1.56
SOX3P41225 AC011754.1-201ENST00000415201 491 ntTSL 5 BASIC5.3□□□□□ -1.56
SOX3P41225 AL662874.1-201ENST00000426065 230 ntBASIC5.3□□□□□ -1.56
SOX3P41225 AC074011.1-201ENST00000431376 581 ntTSL 4 BASIC5.3□□□□□ -1.56
SOX3P41225 NPM1P18-201ENST00000434232 732 ntBASIC5.3□□□□□ -1.56
SOX3P41225 AL391097.2-201ENST00000435057 485 ntTSL 3 BASIC5.3□□□□□ -1.56
SOX3P41225 LINC02094-201ENST00000437646 520 ntTSL 2 BASIC5.3□□□□□ -1.56
SOX3P41225 AC096775.1-201ENST00000437724 448 ntBASIC5.3□□□□□ -1.56
SOX3P41225 AP000281.1-201ENST00000444036 316 ntBASIC5.3□□□□□ -1.56
SOX3P41225 EEF1B2P6-201ENST00000445713 673 ntBASIC5.3□□□□□ -1.56
SOX3P41225 LRRC37A14P-201ENST00000452297 462 ntBASIC5.3□□□□□ -1.56
SOX3P41225 EPDR1-204ENST00000476620 555 ntTSL 4 BASIC5.3□□□□□ -1.56
SOX3P41225 RN7SL717P-201ENST00000478343 297 ntBASIC5.3□□□□□ -1.56
SOX3P41225 GLUD1P3-202ENST00000508551 200 ntBASIC5.3□□□□□ -1.56
SOX3P41225 AC106872.4-201ENST00000510050 523 ntBASIC5.3□□□□□ -1.56
SOX3P41225 AC011389.1-203ENST00000513790 573 ntTSL 4 BASIC5.3□□□□□ -1.56
SOX3P41225 RNU6-615P-201ENST00000516065 106 ntBASIC5.3□□□□□ -1.56
SOX3P41225 SNORA43.3-201ENST00000517240 103 ntBASIC5.3□□□□□ -1.56
SOX3P41225 AC021678.3-201ENST00000517893 476 ntBASIC5.3□□□□□ -1.56
SOX3P41225 AP003086.3-201ENST00000527030 365 ntTSL 3 BASIC5.3□□□□□ -1.56
SOX3P41225 AP002815.1-201ENST00000533740 386 ntTSL 3 BASIC5.3□□□□□ -1.56
SOX3P41225 AC084824.2-201ENST00000548906 345 ntBASIC5.3□□□□□ -1.56
SOX3P41225 LINC02327-205ENST00000550990 472 ntTSL 3 BASIC5.3□□□□□ -1.56
SOX3P41225 DPPA2P4-201ENST00000563717 878 ntBASIC5.3□□□□□ -1.56
SOX3P41225 AC011468.1-201ENST00000569091 675 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
SOX3P41225 AC074050.3-201ENST00000569175 441 ntTSL 4 BASIC5.3□□□□□ -1.56
SOX3P41225 AC087301.1-201ENST00000579037 321 ntTSL 3 BASIC5.3□□□□□ -1.56
SOX3P41225 AC020909.2-201ENST00000595005 626 ntTSL 2 BASIC5.3□□□□□ -1.56
SOX3P41225 DARS-AS1-217ENST00000599279 544 ntTSL 5 BASIC5.3□□□□□ -1.56
SOX3P41225 AL583832.1-201ENST00000603227 784 ntBASIC5.3□□□□□ -1.56
SOX3P41225 FAM49B-230ENST00000639004 837 ntTSL 5 BASIC5.3□□□□□ -1.56
SOX3P41225 ZNF189-201ENST00000259395 3115 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
SOX3P41225 PSG9-202ENST00000270077 1705 ntAPPRIS P2 TSL 1 (best) BASIC5.3□□□□□ -1.56
SOX3P41225 AC011287.1-206ENST00000638774 2642 ntTSL 5 BASIC5.3□□□□□ -1.56
SOX3P41225 TRAT1-201ENST00000295756 1919 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
SOX3P41225 GRAMD1C-208ENST00000472026 1876 ntTSL 2 BASIC5.3□□□□□ -1.56
SOX3P41225 SDAD1-203ENST00000395711 2513 ntTSL 2 BASIC5.3□□□□□ -1.56
SOX3P41225 AP001029.2-203ENST00000589795 4910 ntBASIC5.3□□□□□ -1.56
SOX3P41225 GTF2IP4-201ENST00000453092 2054 ntBASIC5.3□□□□□ -1.56
SOX3P41225 MBNL2-204ENST00000397601 4487 ntTSL 5 BASIC5.3□□□□□ -1.56
SOX3P41225 ZNF81-202ENST00000338637 7859 ntAPPRIS P1 TSL 3 BASIC5.3□□□□□ -1.56
SOX3P41225 IGSF10-201ENST00000282466 11067 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
SOX3P41225 ZNF493-203ENST00000392288 5023 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
SOX3P41225 ZNF271P-205ENST00000639248 4573 ntTSL 5 BASIC5.3□□□□□ -1.56
SOX3P41225 KSR2-202ENST00000425217 17008 ntTSL 5 BASIC5.29□□□□□ -1.56
SOX3P41225 MRE11-203ENST00000393241 2604 ntAPPRIS ALT1 TSL 5 BASIC5.29□□□□□ -1.56
SOX3P41225 ANKRD49-208ENST00000544253 3002 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
SOX3P41225 PPARGC1A-201ENST00000264867 6318 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
SOX3P41225 DDX3Y-201ENST00000336079 4445 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
SOX3P41225 DGKB-201ENST00000399322 6684 ntAPPRIS P2 TSL 5 BASIC5.29□□□□□ -1.56
SOX3P41225 EEF1A1P30-201ENST00000429708 1315 ntBASIC5.29□□□□□ -1.56
SOX3P41225 AC117409.1-201ENST00000470499 1310 ntBASIC5.29□□□□□ -1.56
SOX3P41225 CEACAMP10-201ENST00000489959 1721 ntTSL 2 BASIC5.29□□□□□ -1.56
SOX3P41225 AL355306.2-206ENST00000635233 1903 ntTSL 5 BASIC5.29□□□□□ -1.56
SOX3P41225 ZNF227-208ENST00000589005 2943 ntTSL 2 BASIC5.29□□□□□ -1.56
SOX3P41225 NSF-206ENST00000575068 2667 ntTSL 2 BASIC5.29□□□□□ -1.56
SOX3P41225 UQCR10-201ENST00000330029 916 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
SOX3P41225 AGBL4-201ENST00000334103 881 ntTSL 5 BASIC5.29□□□□□ -1.56
SOX3P41225 RNA5SP46-201ENST00000362370 120 ntBASIC5.29□□□□□ -1.56
SOX3P41225 RN7SKP145-201ENST00000363291 303 ntBASIC5.29□□□□□ -1.56
SOX3P41225 G6PC2-202ENST00000375363 1214 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
SOX3P41225 AL050305.1-201ENST00000399993 1230 ntBASIC5.29□□□□□ -1.56
SOX3P41225 BTBD9-203ENST00000403056 1155 ntTSL 5 BASIC5.29□□□□□ -1.56
SOX3P41225 ZNF92P1Y-201ENST00000415010 1191 ntBASIC5.29□□□□□ -1.56
SOX3P41225 AC099654.1-202ENST00000415836 564 ntTSL 4 BASIC5.29□□□□□ -1.56
SOX3P41225 EEF1A1P29-201ENST00000416082 1096 ntBASIC5.29□□□□□ -1.56
SOX3P41225 GPC5-AS2-201ENST00000417589 401 ntTSL 3 BASIC5.29□□□□□ -1.56
SOX3P41225 AC013268.2-201ENST00000420753 337 ntBASIC5.29□□□□□ -1.56
SOX3P41225 AL451047.1-201ENST00000424451 814 ntTSL 3 BASIC5.29□□□□□ -1.56
SOX3P41225 CRIP1P1-201ENST00000427567 185 ntBASIC5.29□□□□□ -1.56
SOX3P41225 AP001476.3-201ENST00000429512 415 ntTSL 3 BASIC5.29□□□□□ -1.56
SOX3P41225 AC002504.1-201ENST00000438281 691 ntBASIC5.29□□□□□ -1.56
SOX3P41225 AC023271.1-201ENST00000445936 1090 ntBASIC5.29□□□□□ -1.56
SOX3P41225 OR7E116P-201ENST00000448529 957 ntBASIC5.29□□□□□ -1.56
SOX3P41225 C2orf80-207ENST00000453017 722 ntTSL 3 BASIC5.29□□□□□ -1.56
SOX3P41225 AC117386.2-203ENST00000489690 557 ntTSL 3 BASIC5.29□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 119.6 ms