Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 TOMM20P2-201ENST00000540082 421 ntBASIC6.53□□□□□ -1.36
BRCA1P38398 AC009396.1-201ENST00000553628 1079 ntTSL 2 BASIC6.53□□□□□ -1.36
BRCA1P38398 NUFIP2-202ENST00000579665 559 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
BRCA1P38398 TTN-AS1-232ENST00000589487 1077 ntTSL 5 BASIC6.53□□□□□ -1.36
BRCA1P38398 AC011487.3-201ENST00000593607 453 ntBASIC6.53□□□□□ -1.36
BRCA1P38398 FGF1-213ENST00000610990 3802 ntAPPRIS P1 TSL 4 BASIC6.53□□□□□ -1.36
BRCA1P38398 LINC01128-205ENST00000445118 6606 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
BRCA1P38398 ASAH2-203ENST00000443575 1942 ntTSL 5 BASIC6.53□□□□□ -1.36
BRCA1P38398 AC005703.1-201ENST00000431343 1773 ntTSL 2 BASIC6.53□□□□□ -1.36
BRCA1P38398 INTS6-202ENST00000398119 7041 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
BRCA1P38398 BDNF-217ENST00000533131 3878 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
BRCA1P38398 NBPF11-202ENST00000614015 4630 ntAPPRIS P2 TSL 2 BASIC6.52□□□□□ -1.37
BRCA1P38398 NBPF12-205ENST00000617614 4630 ntTSL 5 BASIC6.52□□□□□ -1.37
BRCA1P38398 NIPA1-202ENST00000437912 7613 ntAPPRIS ALT2 TSL 1 (best) BASIC6.52□□□□□ -1.37
BRCA1P38398 VIP-201ENST00000367243 1581 ntAPPRIS ALT1 TSL 1 (best) BASIC6.52□□□□□ -1.37
BRCA1P38398 ZNF345-215ENST00000614069 3103 ntAPPRIS P1 TSL 3 BASIC6.52□□□□□ -1.37
BRCA1P38398 UNC79-202ENST00000393151 7908 ntTSL 5 BASIC6.52□□□□□ -1.37
BRCA1P38398 AL034345.2-202ENST00000416948 830 ntTSL 2 BASIC6.52□□□□□ -1.37
BRCA1P38398 RPS27AP7-201ENST00000422792 455 ntBASIC6.52□□□□□ -1.37
BRCA1P38398 MRPS21P2-201ENST00000424704 264 ntBASIC6.52□□□□□ -1.37
BRCA1P38398 AL807757.1-201ENST00000437846 424 ntTSL 3 BASIC6.52□□□□□ -1.37
BRCA1P38398 AL033380.1-201ENST00000442781 421 ntTSL 2 BASIC6.52□□□□□ -1.37
BRCA1P38398 AC063943.1-201ENST00000465434 453 ntBASIC6.52□□□□□ -1.37
BRCA1P38398 AC103987.1-201ENST00000473394 348 ntBASIC6.52□□□□□ -1.37
BRCA1P38398 SNORA70.11-201ENST00000515987 138 ntBASIC6.52□□□□□ -1.37
BRCA1P38398 SNORA70.13-201ENST00000516116 138 ntBASIC6.52□□□□□ -1.37
BRCA1P38398 AP002981.1-201ENST00000517692 975 ntBASIC6.52□□□□□ -1.37
BRCA1P38398 AP006289.1-201ENST00000538089 277 ntBASIC6.52□□□□□ -1.37
BRCA1P38398 TRPT1-216ENST00000546133 382 ntTSL 2 BASIC6.52□□□□□ -1.37
BRCA1P38398 MGAT4C-206ENST00000552435 550 ntTSL 4 BASIC6.52□□□□□ -1.37
BRCA1P38398 AC007599.2-201ENST00000573040 493 ntTSL 5 BASIC6.52□□□□□ -1.37
BRCA1P38398 MIR4675-201ENST00000577898 77 ntBASIC6.52□□□□□ -1.37
BRCA1P38398 MIR3160-1-201ENST00000577972 85 ntBASIC6.52□□□□□ -1.37
BRCA1P38398 MIR3667-201ENST00000581025 74 ntBASIC6.52□□□□□ -1.37
BRCA1P38398 ZNF283-207ENST00000593164 1260 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
BRCA1P38398 AC006115.2-201ENST00000596823 202 ntBASIC6.52□□□□□ -1.37
BRCA1P38398 MBNL2-201ENST00000343600 4596 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
BRCA1P38398 CDKL3-209ENST00000523054 1775 ntTSL 2 BASIC6.52□□□□□ -1.37
BRCA1P38398 FHL5-201ENST00000326771 2031 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
BRCA1P38398 SLC17A2-203ENST00000377850 2524 ntAPPRIS ALT2 TSL 5 BASIC6.52□□□□□ -1.37
BRCA1P38398 TSC1-203ENST00000440111 8463 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
BRCA1P38398 RWDD2A-201ENST00000369724 3744 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
BRCA1P38398 MAPRE2-203ENST00000436190 4323 ntTSL 2 BASIC6.52□□□□□ -1.37
BRCA1P38398 REV3L-203ENST00000368805 10461 ntAPPRIS P1 TSL 5 BASIC6.52□□□□□ -1.37
BRCA1P38398 WDR72-208ENST00000614174 4224 ntTSL 2 BASIC6.52□□□□□ -1.37
BRCA1P38398 ALS2CR12-203ENST00000405148 2013 ntAPPRIS P3 TSL 5 BASIC6.52□□□□□ -1.37
BRCA1P38398 MTOR-202ENST00000376838 4017 ntTSL 2 BASIC6.52□□□□□ -1.37
BRCA1P38398 HDAC9-203ENST00000406072 4102 ntTSL 5 BASIC6.52□□□□□ -1.37
BRCA1P38398 ZFY-202ENST00000383052 5113 ntAPPRIS P1 TSL 5 BASIC6.51□□□□□ -1.37
BRCA1P38398 AC004975.1-201ENST00000428733 208 ntBASIC6.51□□□□□ -1.37
BRCA1P38398 AL353689.2-201ENST00000433837 440 ntTSL 3 BASIC6.51□□□□□ -1.37
BRCA1P38398 AC073410.1-201ENST00000435125 589 ntBASIC6.51□□□□□ -1.37
BRCA1P38398 AC068489.1-201ENST00000453706 261 ntTSL 5 BASIC6.51□□□□□ -1.37
BRCA1P38398 AC092754.1-201ENST00000472975 479 ntBASIC6.51□□□□□ -1.37
BRCA1P38398 AC104257.1-202ENST00000524275 884 ntTSL 3 BASIC6.51□□□□□ -1.37
BRCA1P38398 AC092078.1-201ENST00000558370 325 ntTSL 3 BASIC6.51□□□□□ -1.37
BRCA1P38398 HIRAP1-201ENST00000605318 787 ntBASIC6.51□□□□□ -1.37
BRCA1P38398 AC068724.3-201ENST00000625906 87 ntBASIC6.51□□□□□ -1.37
BRCA1P38398 ZNF329-203ENST00000597186 3930 ntAPPRIS P1 TSL 5 BASIC6.51□□□□□ -1.37
BRCA1P38398 LINC00824-203ENST00000520206 2055 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
BRCA1P38398 UGT2A1-205ENST00000512704 2519 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
BRCA1P38398 GPRIN3-201ENST00000333209 6260 ntAPPRIS P1 BASIC6.51□□□□□ -1.37
BRCA1P38398 AC006511.3-201ENST00000624929 1783 ntBASIC6.51□□□□□ -1.37
BRCA1P38398 NOSTRIN-202ENST00000397206 1446 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
BRCA1P38398 AASDH-201ENST00000205214 3590 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
BRCA1P38398 SELE-201ENST00000333360 3857 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
BRCA1P38398 ATM-201ENST00000278616 13147 ntAPPRIS P1 TSL 5 BASIC6.51□□□□□ -1.37
BRCA1P38398 OR2D2-201ENST00000299459 1110 ntAPPRIS P1 BASIC6.51□□□□□ -1.37
BRCA1P38398 TRDC-201ENST00000390477 720 ntAPPRIS P1 BASIC6.51□□□□□ -1.37
BRCA1P38398 RNU2-50P-201ENST00000410494 143 ntBASIC6.51□□□□□ -1.37
BRCA1P38398 AC091685.1-201ENST00000442436 448 ntTSL 3 BASIC6.51□□□□□ -1.37
BRCA1P38398 AL356859.1-201ENST00000449180 414 ntTSL 5 BASIC6.51□□□□□ -1.37
BRCA1P38398 RPL12P39-201ENST00000455456 496 ntBASIC6.51□□□□□ -1.37
BRCA1P38398 RPS4XP20-201ENST00000505751 772 ntBASIC6.51□□□□□ -1.37
BRCA1P38398 AC096754.1-201ENST00000508904 818 ntBASIC6.51□□□□□ -1.37
BRCA1P38398 TOMM22P4-201ENST00000511318 336 ntBASIC6.51□□□□□ -1.37
BRCA1P38398 GTF2IP11-201ENST00000526931 420 ntBASIC6.51□□□□□ -1.37
BRCA1P38398 AC084880.2-201ENST00000536009 501 ntTSL 3 BASIC6.51□□□□□ -1.37
BRCA1P38398 AC008033.2-201ENST00000542626 177 ntBASIC6.51□□□□□ -1.37
BRCA1P38398 LINC02327-203ENST00000550122 738 ntTSL 2 BASIC6.51□□□□□ -1.37
BRCA1P38398 H3F3BP2-201ENST00000583907 357 ntBASIC6.51□□□□□ -1.37
BRCA1P38398 AC067852.5-201ENST00000589299 310 ntBASIC6.51□□□□□ -1.37
BRCA1P38398 AC005377.1-201ENST00000605126 456 ntBASIC6.51□□□□□ -1.37
BRCA1P38398 ZRANB3-211ENST00000619650 2494 ntTSL 5 BASIC6.51□□□□□ -1.37
BRCA1P38398 FSHR-202ENST00000406846 2784 ntAPPRIS P4 TSL 1 (best) BASIC6.5□□□□□ -1.37
BRCA1P38398 SLC39A12-201ENST00000377369 2808 ntAPPRIS ALT1 TSL 1 (best) BASIC6.5□□□□□ -1.37
BRCA1P38398 LINC00347-202ENST00000594461 2371 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
BRCA1P38398 LIN28B-201ENST00000345080 5505 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
BRCA1P38398 SMG1-202ENST00000446231 16115 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
BRCA1P38398 SLC25A40-201ENST00000341119 4045 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
BRCA1P38398 TRBV29-1-201ENST00000422143 402 ntAPPRIS P1 BASIC6.5□□□□□ -1.37
BRCA1P38398 AL354824.1-201ENST00000424931 349 ntTSL 3 BASIC6.5□□□□□ -1.37
BRCA1P38398 AL139327.2-202ENST00000437057 400 ntTSL 3 BASIC6.5□□□□□ -1.37
BRCA1P38398 AC074327.1-202ENST00000443523 369 ntTSL 2 BASIC6.5□□□□□ -1.37
BRCA1P38398 FLJ27354-202ENST00000443562 770 ntTSL 3 BASIC6.5□□□□□ -1.37
BRCA1P38398 AC099518.4-204ENST00000567047 380 ntTSL 2 BASIC6.5□□□□□ -1.37
BRCA1P38398 MIR4277-201ENST00000578298 84 ntBASIC6.5□□□□□ -1.37
BRCA1P38398 SSX9-202ENST00000608568 580 ntTSL 4 BASIC6.5□□□□□ -1.37
BRCA1P38398 AC019193.2-201ENST00000610012 634 ntBASIC6.5□□□□□ -1.37
BRCA1P38398 AC099654.6-201ENST00000636487 512 ntBASIC6.5□□□□□ -1.37
Retrieved 100 of 98,524 protein–RNA pairs in 96.1 ms