Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 RPL23AP19-201ENST00000436229 369 ntBASIC5.65□□□□□ -1.5
MSH3P20585 AL139161.2-201ENST00000438371 740 ntTSL 3 BASIC5.65□□□□□ -1.5
MSH3P20585 AC017074.2-201ENST00000439382 607 ntTSL 2 BASIC5.65□□□□□ -1.5
MSH3P20585 RPL12P11-201ENST00000439970 501 ntBASIC5.65□□□□□ -1.5
MSH3P20585 AC073109.1-201ENST00000445066 978 ntBASIC5.65□□□□□ -1.5
MSH3P20585 AL009050.1-201ENST00000445278 426 ntTSL 3 BASIC5.65□□□□□ -1.5
MSH3P20585 LRRC37A14P-201ENST00000452297 462 ntBASIC5.65□□□□□ -1.5
MSH3P20585 AC144530.1-201ENST00000452862 555 ntBASIC5.65□□□□□ -1.5
MSH3P20585 AC073130.1-202ENST00000454897 587 ntTSL 2 BASIC5.65□□□□□ -1.5
MSH3P20585 RPS23P6-201ENST00000466136 431 ntBASIC5.65□□□□□ -1.5
MSH3P20585 HESX1-202ENST00000473921 757 ntTSL 5 BASIC5.65□□□□□ -1.5
MSH3P20585 PHC3-208ENST00000481639 1075 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
MSH3P20585 AC027343.2-201ENST00000513219 343 ntTSL 3 BASIC5.65□□□□□ -1.5
MSH3P20585 AC111000.6-201ENST00000514471 709 ntBASIC5.65□□□□□ -1.5
MSH3P20585 ATPAF1-210ENST00000532925 998 ntTSL 2 BASIC5.65□□□□□ -1.5
MSH3P20585 AAGAB-203ENST00000542650 1015 ntTSL 2 BASIC5.65□□□□□ -1.5
MSH3P20585 LINC02327-205ENST00000550990 472 ntTSL 3 BASIC5.65□□□□□ -1.5
MSH3P20585 IGBP1P1-201ENST00000554337 1009 ntBASIC5.65□□□□□ -1.5
MSH3P20585 AL161752.1-201ENST00000557721 263 ntTSL 2 BASIC5.65□□□□□ -1.5
MSH3P20585 AC067805.1-201ENST00000559344 470 ntBASIC5.65□□□□□ -1.5
MSH3P20585 PWRN1-204ENST00000565241 480 ntTSL 2 BASIC5.65□□□□□ -1.5
MSH3P20585 TM6SF1-207ENST00000565774 1020 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
MSH3P20585 MRO-208ENST00000588444 866 ntTSL 3 BASIC5.65□□□□□ -1.5
MSH3P20585 AC027243.2-201ENST00000602530 724 ntBASIC5.65□□□□□ -1.5
MSH3P20585 LINC02343-201ENST00000605909 573 ntTSL 4 BASIC5.65□□□□□ -1.5
MSH3P20585 AC015712.7-201ENST00000615211 635 ntBASIC5.65□□□□□ -1.5
MSH3P20585 SNHG5-214ENST00000623001 598 ntTSL 2 BASIC5.65□□□□□ -1.5
MSH3P20585 POU2F2-219ENST00000625670 371 ntTSL 5 BASIC5.65□□□□□ -1.5
MSH3P20585 CEACAM1-201ENST00000161559 3519 ntAPPRIS P3 TSL 1 (best) BASIC5.65□□□□□ -1.5
MSH3P20585 AL355306.2-206ENST00000635233 1903 ntTSL 5 BASIC5.65□□□□□ -1.51
MSH3P20585 PTK2-213ENST00000519465 3279 ntTSL 1 (best) BASIC5.65□□□□□ -1.51
MSH3P20585 LINC01091-203ENST00000514823 5262 ntTSL 1 (best) BASIC5.65□□□□□ -1.51
MSH3P20585 TEK-205ENST00000615002 4666 ntTSL 5 BASIC5.65□□□□□ -1.51
MSH3P20585 AC109446.4-201ENST00000623235 2755 ntBASIC5.65□□□□□ -1.51
MSH3P20585 AC125336.1-201ENST00000508893 2827 ntBASIC5.65□□□□□ -1.51
MSH3P20585 TMEM161B-211ENST00000512429 1796 ntTSL 2 BASIC5.65□□□□□ -1.51
MSH3P20585 FOXN2-201ENST00000340553 5408 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
MSH3P20585 SLC4A7-206ENST00000428386 7385 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
MSH3P20585 ATF7IP2-201ENST00000324570 3396 ntTSL 5 BASIC5.64□□□□□ -1.51
MSH3P20585 CCAR1-217ENST00000543719 3521 ntTSL 5 BASIC5.64□□□□□ -1.51
MSH3P20585 KMT5B-215ENST00000615954 4306 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
MSH3P20585 POLK-210ENST00000508526 2019 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
MSH3P20585 SNORA64.1-201ENST00000362600 132 ntBASIC5.64□□□□□ -1.51
MSH3P20585 RNA5SP394-201ENST00000364216 119 ntBASIC5.64□□□□□ -1.51
MSH3P20585 RN7SKP15-201ENST00000364742 309 ntBASIC5.64□□□□□ -1.51
MSH3P20585 AC019070.1-201ENST00000415008 1024 ntBASIC5.64□□□□□ -1.51
MSH3P20585 RPL34P3-201ENST00000421454 338 ntBASIC5.64□□□□□ -1.51
MSH3P20585 OR4K3-201ENST00000425829 947 ntAPPRIS P1 BASIC5.64□□□□□ -1.51
MSH3P20585 RPS29P14-201ENST00000431518 171 ntBASIC5.64□□□□□ -1.51
MSH3P20585 AL513323.1-201ENST00000431862 1063 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
MSH3P20585 AC073062.1-201ENST00000434509 455 ntTSL 5 BASIC5.64□□□□□ -1.51
MSH3P20585 GUSBP6-201ENST00000434932 640 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
MSH3P20585 AL606534.1-201ENST00000439562 694 ntTSL 3 BASIC5.64□□□□□ -1.51
MSH3P20585 USP12-AS1-201ENST00000440657 268 ntTSL 5 BASIC5.64□□□□□ -1.51
MSH3P20585 AC087501.1-201ENST00000445617 715 ntTSL 5 BASIC5.64□□□□□ -1.51
MSH3P20585 RPL31P15-201ENST00000449770 338 ntBASIC5.64□□□□□ -1.51
MSH3P20585 AL157371.1-201ENST00000451910 394 ntTSL 3 BASIC5.64□□□□□ -1.51
MSH3P20585 AC087672.1-201ENST00000479876 766 ntBASIC5.64□□□□□ -1.51
MSH3P20585 OARD1-211ENST00000480585 829 ntTSL 3 BASIC5.64□□□□□ -1.51
MSH3P20585 AC073610.1-201ENST00000489971 396 ntBASIC5.64□□□□□ -1.51
MSH3P20585 AGGF1P3-201ENST00000493675 1213 ntBASIC5.64□□□□□ -1.51
MSH3P20585 AC080013.1-206ENST00000496842 712 ntTSL 2 BASIC5.64□□□□□ -1.51
MSH3P20585 LINC00483-204ENST00000502517 940 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
MSH3P20585 MORF4L2P1-201ENST00000503761 858 ntBASIC5.64□□□□□ -1.51
MSH3P20585 AC106864.2-201ENST00000505632 740 ntTSL 2 BASIC5.64□□□□□ -1.51
MSH3P20585 RNU6-615P-201ENST00000516065 106 ntBASIC5.64□□□□□ -1.51
MSH3P20585 AP002981.1-201ENST00000517692 975 ntBASIC5.64□□□□□ -1.51
MSH3P20585 AC112191.2-201ENST00000522428 333 ntBASIC5.64□□□□□ -1.51
MSH3P20585 KLRK1-204ENST00000540818 951 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
MSH3P20585 AC090109.1-201ENST00000548885 819 ntTSL 3 BASIC5.64□□□□□ -1.51
MSH3P20585 AGGF1P7-201ENST00000562369 913 ntBASIC5.64□□□□□ -1.51
MSH3P20585 AC244131.2-201ENST00000612592 512 ntTSL 3 BASIC5.64□□□□□ -1.51
MSH3P20585 AL162574.2-201ENST00000614618 657 ntBASIC5.64□□□□□ -1.51
MSH3P20585 AL035661.1-201ENST00000620459 1144 ntBASIC5.64□□□□□ -1.51
MSH3P20585 AL592430.2-201ENST00000633779 486 ntTSL 5 BASIC5.64□□□□□ -1.51
MSH3P20585 IGLV10-54-202ENST00000640991 351 ntTSL 5 BASIC5.64□□□□□ -1.51
MSH3P20585 CPED1-203ENST00000423795 2189 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
MSH3P20585 PCDH15-207ENST00000395430 7002 ntTSL 5 BASIC5.64□□□□□ -1.51
MSH3P20585 DROSHA-212ENST00000511367 5305 ntAPPRIS P4 TSL 1 (best) BASIC5.64□□□□□ -1.51
MSH3P20585 ZNF345-215ENST00000614069 3103 ntAPPRIS P1 TSL 3 BASIC5.64□□□□□ -1.51
MSH3P20585 MBNL2-204ENST00000397601 4487 ntTSL 5 BASIC5.64□□□□□ -1.51
MSH3P20585 PPARGC1A-201ENST00000264867 6318 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
MSH3P20585 PCDH15-215ENST00000409834 5401 ntTSL 5 BASIC5.64□□□□□ -1.51
MSH3P20585 MAPKAPK5P1-201ENST00000431810 1376 ntBASIC5.64□□□□□ -1.51
MSH3P20585 SCN2A-203ENST00000375437 8792 ntAPPRIS ALT1 TSL 5 BASIC5.64□□□□□ -1.51
MSH3P20585 KIAA1328-202ENST00000586135 1863 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
MSH3P20585 ZNF227-208ENST00000589005 2943 ntTSL 2 BASIC5.64□□□□□ -1.51
MSH3P20585 PGM3-211ENST00000512866 2013 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
MSH3P20585 AC027279.4-201ENST00000624371 2072 ntBASIC5.63□□□□□ -1.51
MSH3P20585 SLC35F5-213ENST00000638402 1554 ntTSL 5 BASIC5.63□□□□□ -1.51
MSH3P20585 RAB3GAP1-207ENST00000539493 3161 ntTSL 5 BASIC5.63□□□□□ -1.51
MSH3P20585 RFC1-202ENST00000381897 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC5.63□□□□□ -1.51
MSH3P20585 TRPM6-203ENST00000361255 8271 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
MSH3P20585 DDX3Y-201ENST00000336079 4445 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
MSH3P20585 MRPS36-201ENST00000256441 1286 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
MSH3P20585 ANAPC10-201ENST00000309439 868 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
MSH3P20585 RNU4-23P-201ENST00000362839 140 ntBASIC5.63□□□□□ -1.51
MSH3P20585 RNU1-136P-201ENST00000384181 164 ntBASIC5.63□□□□□ -1.51
MSH3P20585 AC087752.1-201ENST00000391360 558 ntBASIC5.63□□□□□ -1.51
MSH3P20585 NACAP7-201ENST00000407371 609 ntBASIC5.63□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 10.6 ms