Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 SAMD3-205ENST00000457563 1877 ntTSL 2 BASIC4.64□□□□□ -1.67
SDCBPO00560 LINC01538-201ENST00000588074 2408 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
SDCBPO00560 PCDH15-206ENST00000373965 9237 ntAPPRIS ALT2 TSL 5 BASIC4.64□□□□□ -1.67
SDCBPO00560 A1CF-205ENST00000374001 9221 ntAPPRIS ALT1 TSL 5 BASIC4.64□□□□□ -1.67
SDCBPO00560 ITGAV-204ENST00000433736 3288 ntAPPRIS ALT2 TSL 2 BASIC4.64□□□□□ -1.67
SDCBPO00560 EMSY-206ENST00000525038 4376 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
SDCBPO00560 AC092376.2-201ENST00000622621 4116 ntBASIC4.64□□□□□ -1.67
SDCBPO00560 AL355306.2-206ENST00000635233 1903 ntTSL 5 BASIC4.64□□□□□ -1.67
SDCBPO00560 ZBTB38-220ENST00000514251 7683 ntAPPRIS P1 TSL 2 BASIC4.63□□□□□ -1.67
SDCBPO00560 FOXP2-202ENST00000360232 1412 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
SDCBPO00560 FOXN2-203ENST00000616844 1414 ntTSL 5 BASIC4.63□□□□□ -1.67
SDCBPO00560 AC073136.1-201ENST00000449426 2884 ntBASIC4.63□□□□□ -1.67
SDCBPO00560 NBPF10-201ENST00000583866 13042 ntAPPRIS P1 TSL 5 BASIC4.63□□□□□ -1.67
SDCBPO00560 ZNF850-203ENST00000614887 7625 ntAPPRIS ALT2 TSL 1 (best) BASIC4.63□□□□□ -1.67
SDCBPO00560 DNAJC16-210ENST00000616884 5882 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
SDCBPO00560 STK31-201ENST00000354639 3596 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
SDCBPO00560 HSPA13-201ENST00000285667 3986 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
SDCBPO00560 AC125336.1-201ENST00000508893 2827 ntBASIC4.63□□□□□ -1.67
SDCBPO00560 EPHA4-202ENST00000409854 3454 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
SDCBPO00560 DOCK9-207ENST00000442173 7643 ntAPPRIS ALT2 TSL 5 BASIC4.63□□□□□ -1.67
SDCBPO00560 CLEC2D-201ENST00000261339 465 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
SDCBPO00560 GABRG3-201ENST00000333743 1235 ntTSL 5 BASIC4.63□□□□□ -1.67
SDCBPO00560 SNORA64.1-201ENST00000362600 132 ntBASIC4.63□□□□□ -1.67
SDCBPO00560 RNA5SP30-201ENST00000365552 115 ntBASIC4.63□□□□□ -1.67
SDCBPO00560 RPS3AP2-201ENST00000407190 754 ntBASIC4.63□□□□□ -1.67
SDCBPO00560 RN7SKP240-201ENST00000410583 375 ntBASIC4.63□□□□□ -1.67
SDCBPO00560 MED4-AS1-201ENST00000422483 542 ntTSL 2 BASIC4.63□□□□□ -1.67
SDCBPO00560 ATP5A1P8-201ENST00000423669 1291 ntBASIC4.63□□□□□ -1.67
SDCBPO00560 HMGN2P27-201ENST00000427352 270 ntBASIC4.63□□□□□ -1.67
SDCBPO00560 OR52E3P-201ENST00000452083 936 ntBASIC4.63□□□□□ -1.67
SDCBPO00560 RPL12P24-201ENST00000474907 486 ntBASIC4.63□□□□□ -1.67
SDCBPO00560 OARD1-211ENST00000480585 829 ntTSL 3 BASIC4.63□□□□□ -1.67
SDCBPO00560 AC006499.4-201ENST00000510947 694 ntBASIC4.63□□□□□ -1.67
SDCBPO00560 HMGN1P9-201ENST00000515212 298 ntBASIC4.63□□□□□ -1.67
SDCBPO00560 RNA5SP271-201ENST00000516700 88 ntBASIC4.63□□□□□ -1.67
SDCBPO00560 OR5D2P-201ENST00000524390 911 ntBASIC4.63□□□□□ -1.67
SDCBPO00560 AP006259.1-201ENST00000528520 561 ntTSL 2 BASIC4.63□□□□□ -1.67
SDCBPO00560 LRTOMT-215ENST00000538478 814 ntTSL 2 BASIC4.63□□□□□ -1.67
SDCBPO00560 AC079600.1-201ENST00000550326 297 ntBASIC4.63□□□□□ -1.67
SDCBPO00560 ETFRF1-211ENST00000557540 1259 ntAPPRIS ALT1 TSL 2 BASIC4.63□□□□□ -1.67
SDCBPO00560 AC007639.1-201ENST00000577281 833 ntTSL 3 BASIC4.63□□□□□ -1.67
SDCBPO00560 H3F3BP2-201ENST00000583907 357 ntBASIC4.63□□□□□ -1.67
SDCBPO00560 AC063977.5-201ENST00000601044 974 ntBASIC4.63□□□□□ -1.67
SDCBPO00560 LAMTOR5-AS1-217ENST00000608152 407 ntTSL 5 BASIC4.63□□□□□ -1.67
SDCBPO00560 LAMTOR5-AS1-227ENST00000609653 457 ntTSL 2 BASIC4.63□□□□□ -1.67
SDCBPO00560 uc_338.7-201ENST00000621834 124 ntBASIC4.63□□□□□ -1.67
SDCBPO00560 LINC01206-233ENST00000630063 878 ntTSL 5 BASIC4.63□□□□□ -1.67
SDCBPO00560 MYOCOS-203ENST00000637303 564 ntAPPRIS P5 TSL 5 BASIC4.63□□□□□ -1.67
SDCBPO00560 ZNF214-204ENST00000536068 2562 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
SDCBPO00560 NCOA7-202ENST00000368357 5521 ntAPPRIS P3 TSL 1 (best) BASIC4.63□□□□□ -1.67
SDCBPO00560 PHTF2-207ENST00000424760 1977 ntTSL 2 BASIC4.63□□□□□ -1.67
SDCBPO00560 AP002512.4-201ENST00000641310 4672 ntAPPRIS P1 BASIC4.63□□□□□ -1.67
SDCBPO00560 SLC24A2-202ENST00000341998 10749 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
SDCBPO00560 GAPT-202ENST00000396776 3016 ntAPPRIS P1 TSL 2 BASIC4.63□□□□□ -1.67
SDCBPO00560 MCF2L2-202ENST00000414362 3031 ntTSL 2 BASIC4.63□□□□□ -1.67
SDCBPO00560 TBCK-205ENST00000432496 3362 ntAPPRIS P1 TSL 2 BASIC4.63□□□□□ -1.67
SDCBPO00560 SYTL2-208ENST00000524452 2733 ntAPPRIS P3 TSL 2 BASIC4.63□□□□□ -1.67
SDCBPO00560 TCP11X1-202ENST00000622971 1372 ntBASIC4.63□□□□□ -1.67
SDCBPO00560 WDPCP-202ENST00000398544 2063 ntAPPRIS ALT2 TSL 1 (best) BASIC4.63□□□□□ -1.67
SDCBPO00560 ZNF440-201ENST00000304060 4189 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
SDCBPO00560 ADGRF2-202ENST00000398742 4895 ntAPPRIS P1 TSL 5 BASIC4.63□□□□□ -1.67
SDCBPO00560 ST8SIA4-201ENST00000231461 6303 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
SDCBPO00560 GTF2IRD2P1-202ENST00000618962 3055 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
SDCBPO00560 AHCTF1-201ENST00000326225 8633 ntAPPRIS P2 TSL 1 (best) BASIC4.62□□□□□ -1.67
SDCBPO00560 ZNF616-204ENST00000600228 4335 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
SDCBPO00560 CNTN5-201ENST00000279463 5925 ntTSL 5 BASIC4.62□□□□□ -1.67
SDCBPO00560 AC068775.1-202ENST00000538173 1602 ntAPPRIS P1 BASIC4.62□□□□□ -1.67
SDCBPO00560 SCN11A-202ENST00000444237 5729 ntAPPRIS ALT2 TSL 5 BASIC4.62□□□□□ -1.67
SDCBPO00560 DLG1-213ENST00000443183 2516 ntTSL 2 BASIC4.62□□□□□ -1.67
SDCBPO00560 HIST1H1A-201ENST00000244573 648 ntAPPRIS P1 BASIC4.62□□□□□ -1.67
SDCBPO00560 OR7E25P-201ENST00000344844 931 ntBASIC4.62□□□□□ -1.67
SDCBPO00560 AC023490.2-201ENST00000359859 470 ntBASIC4.62□□□□□ -1.67
SDCBPO00560 MIR375-201ENST00000362103 64 ntBASIC4.62□□□□□ -1.67
SDCBPO00560 U3.7-201ENST00000363668 216 ntBASIC4.62□□□□□ -1.67
SDCBPO00560 APOA2-201ENST00000367990 474 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
SDCBPO00560 OR1L6-202ENST00000373684 1044 ntBASIC4.62□□□□□ -1.67
SDCBPO00560 NENFP1-201ENST00000419476 466 ntBASIC4.62□□□□□ -1.67
SDCBPO00560 AL356476.1-201ENST00000421481 480 ntTSL 5 BASIC4.62□□□□□ -1.67
SDCBPO00560 AC127526.2-201ENST00000426436 775 ntBASIC4.62□□□□□ -1.67
SDCBPO00560 AC068631.1-204ENST00000428501 534 ntTSL 3 BASIC4.62□□□□□ -1.67
SDCBPO00560 AL139280.1-201ENST00000436340 463 ntTSL 3 BASIC4.62□□□□□ -1.67
SDCBPO00560 RPS3AP15-201ENST00000483874 781 ntBASIC4.62□□□□□ -1.67
SDCBPO00560 CENPK-210ENST00000510354 1124 ntTSL 5 BASIC4.62□□□□□ -1.67
SDCBPO00560 CASC19-203ENST00000523510 575 ntTSL 3 BASIC4.62□□□□□ -1.67
SDCBPO00560 ALG9-IT1-201ENST00000531305 684 ntTSL 3 BASIC4.62□□□□□ -1.67
SDCBPO00560 AP000763.3-201ENST00000542598 334 ntTSL 5 BASIC4.62□□□□□ -1.67
SDCBPO00560 LINC02293-202ENST00000548385 358 ntTSL 3 BASIC4.62□□□□□ -1.67
SDCBPO00560 AL139354.1-201ENST00000554319 645 ntTSL 5 BASIC4.62□□□□□ -1.67
SDCBPO00560 AC107958.1-201ENST00000556576 290 ntBASIC4.62□□□□□ -1.67
SDCBPO00560 AC009852.2-201ENST00000567898 485 ntBASIC4.62□□□□□ -1.67
SDCBPO00560 AP001496.3-201ENST00000580230 913 ntBASIC4.62□□□□□ -1.67
SDCBPO00560 AC010487.1-201ENST00000594408 1172 ntBASIC4.62□□□□□ -1.67
SDCBPO00560 AC008833.1-201ENST00000611633 691 ntBASIC4.62□□□□□ -1.67
SDCBPO00560 MYBPC1-202ENST00000361685 3871 ntAPPRIS ALT2 TSL 1 (best) BASIC4.62□□□□□ -1.67
SDCBPO00560 ZNF701-202ENST00000391785 2634 ntAPPRIS P3 TSL 1 (best) BASIC4.62□□□□□ -1.67
SDCBPO00560 PSG7-206ENST00000623675 1392 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
SDCBPO00560 LRRC8B-201ENST00000330947 7593 ntAPPRIS P1 TSL 5 BASIC4.62□□□□□ -1.67
SDCBPO00560 NAT1-208ENST00000520546 1446 ntAPPRIS P1 BASIC4.62□□□□□ -1.67
SDCBPO00560 AC093591.2-201ENST00000565254 3843 ntBASIC4.62□□□□□ -1.67
SDCBPO00560 NBPF10-202ENST00000617010 11630 ntTSL 5 BASIC4.62□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 98.3 ms