Protein–RNA interactions for Protein: Q95604

HLA-C, HLA class I histocompatibility antigen, Cw-17 alpha chain, humanhuman

Predictions only

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-CQ95604 LINC02400-201ENST00000548210 351 ntTSL 2 BASIC8□□□□□ -1.13
HLA-CQ95604 AL358335.2-201ENST00000555693 487 ntTSL 3 BASIC8□□□□□ -1.13
HLA-CQ95604 AL137129.1-201ENST00000555937 720 ntTSL 4 BASIC8□□□□□ -1.13
HLA-CQ95604 AC092757.2-201ENST00000559026 633 ntTSL 4 BASIC8□□□□□ -1.13
HLA-CQ95604 PWRN1-205ENST00000565295 465 ntTSL 3 BASIC8□□□□□ -1.13
HLA-CQ95604 AC138915.2-201ENST00000569776 97 ntBASIC8□□□□□ -1.13
HLA-CQ95604 MIR4271-201ENST00000582451 67 ntBASIC8□□□□□ -1.13
HLA-CQ95604 AC243960.4-201ENST00000600532 288 ntBASIC8□□□□□ -1.13
HLA-CQ95604 AL391646.1-201ENST00000603860 190 ntBASIC8□□□□□ -1.13
HLA-CQ95604 AC113139.1-201ENST00000605049 239 ntBASIC8□□□□□ -1.13
HLA-CQ95604 AC113361.1-201ENST00000606683 543 ntBASIC8□□□□□ -1.13
HLA-CQ95604 AL022238.3-201ENST00000609279 443 ntBASIC8□□□□□ -1.13
HLA-CQ95604 AC105429.2-201ENST00000610567 517 ntBASIC8□□□□□ -1.13
HLA-CQ95604 uc_338.5-201ENST00000611839 155 ntBASIC8□□□□□ -1.13
HLA-CQ95604 AC061709.1-202ENST00000615029 527 ntTSL 3 BASIC8□□□□□ -1.13
HLA-CQ95604 ARID1A-209ENST00000615191 3804 ntTSL 5 BASIC8□□□□□ -1.13
HLA-CQ95604 AC091905.1-201ENST00000624400 311 ntBASIC8□□□□□ -1.13
HLA-CQ95604 CU634019.2-201ENST00000625184 593 ntTSL 3 BASIC8□□□□□ -1.13
HLA-CQ95604 SORBS2-206ENST00000393528 3043 ntTSL 1 (best) BASIC8□□□□□ -1.13
HLA-CQ95604 AL590065.1-201ENST00000603371 4774 ntBASIC8□□□□□ -1.13
HLA-CQ95604 PLXDC2-203ENST00000377252 12468 ntAPPRIS P1 TSL 1 (best) BASIC8□□□□□ -1.13
HLA-CQ95604 SH3YL1-202ENST00000402632 3151 ntTSL 1 (best) BASIC8□□□□□ -1.13
HLA-CQ95604 AL049833.3-201ENST00000623920 3738 ntBASIC8□□□□□ -1.13
HLA-CQ95604 ABRAXAS1-201ENST00000321945 4291 ntAPPRIS P1 TSL 1 (best) BASIC8□□□□□ -1.13
HLA-CQ95604 FHL1-206ENST00000394153 2374 ntTSL 5 BASIC8□□□□□ -1.13
HLA-CQ95604 ZNF577-201ENST00000301399 3074 ntAPPRIS P3 TSL 1 (best) BASIC8□□□□□ -1.13
HLA-CQ95604 AFF1-211ENST00000544085 3644 ntAPPRIS ALT2 TSL 5 BASIC8□□□□□ -1.13
HLA-CQ95604 STAMBP-202ENST00000394070 6691 ntAPPRIS P1 TSL 1 (best) BASIC8□□□□□ -1.13
HLA-CQ95604 TPP2-202ENST00000376065 3931 ntAPPRIS P1 TSL 1 (best) BASIC8□□□□□ -1.13
HLA-CQ95604 AC025034.1-201ENST00000552778 1711 ntTSL 3 BASIC8□□□□□ -1.13
HLA-CQ95604 KC6-201ENST00000592302 1713 ntTSL 1 (best) BASIC8□□□□□ -1.13
HLA-CQ95604 ZNF214-204ENST00000536068 2562 ntAPPRIS P1 TSL 1 (best) BASIC8□□□□□ -1.13
HLA-CQ95604 RNASE9-209ENST00000557068 2703 ntAPPRIS P3 TSL 2 BASIC8□□□□□ -1.13
HLA-CQ95604 TULP4-202ENST00000367097 11295 ntAPPRIS P1 TSL 1 (best) BASIC8□□□□□ -1.13
HLA-CQ95604 MS4A7-202ENST00000358246 2871 ntTSL 3 BASIC8□□□□□ -1.13
HLA-CQ95604 GNL2-201ENST00000373062 2334 ntAPPRIS P1 TSL 1 (best) BASIC8□□□□□ -1.13
HLA-CQ95604 PLCB1-202ENST00000378637 3864 ntTSL 1 (best) BASIC8□□□□□ -1.13
HLA-CQ95604 MAP4K4-206ENST00000413150 6958 ntAPPRIS ALT2 TSL 5 BASIC8□□□□□ -1.13
HLA-CQ95604 EHF-201ENST00000257831 3150 ntAPPRIS P1 TSL 1 (best) BASIC8□□□□□ -1.13
HLA-CQ95604 ADA2-202ENST00000330232 3195 ntTSL 2 BASIC8□□□□□ -1.13
HLA-CQ95604 ARHGAP11A-202ENST00000543522 3152 ntTSL 2 BASIC8□□□□□ -1.13
HLA-CQ95604 KLF7-202ENST00000412414 7954 ntTSL 2 BASIC8□□□□□ -1.13
HLA-CQ95604 UGT2B26P-201ENST00000508672 1613 ntBASIC8□□□□□ -1.13
HLA-CQ95604 SYNE1-217ENST00000466159 2610 ntTSL 1 (best) BASIC7.99□□□□□ -1.13
HLA-CQ95604 TNFSF15-201ENST00000374044 2789 ntBASIC7.99□□□□□ -1.13
HLA-CQ95604 ZNF320-201ENST00000391781 6074 ntAPPRIS P1 TSL 1 (best) BASIC7.99□□□□□ -1.13
HLA-CQ95604 RIPOR2-206ENST00000538035 5389 ntTSL 2 BASIC7.99□□□□□ -1.13
HLA-CQ95604 CASP8-203ENST00000323492 2650 ntAPPRIS ALT2 TSL 1 (best) BASIC7.99□□□□□ -1.13
HLA-CQ95604 FANCL-202ENST00000402135 1698 ntAPPRIS ALT1 TSL 2 BASIC7.99□□□□□ -1.13
HLA-CQ95604 NUF2-202ENST00000367900 1842 ntAPPRIS P1 TSL 1 (best) BASIC7.99□□□□□ -1.13
HLA-CQ95604 MFSD8-207ENST00000513559 1813 ntTSL 2 BASIC7.99□□□□□ -1.13
HLA-CQ95604 AC020951.1-201ENST00000624361 2271 ntBASIC7.99□□□□□ -1.13
HLA-CQ95604 AC105101.1-201ENST00000623698 2873 ntTSL 5 BASIC7.99□□□□□ -1.13
HLA-CQ95604 AC116351.1-201ENST00000399869 3482 ntTSL 2 BASIC7.99□□□□□ -1.13
HLA-CQ95604 MTMR3-205ENST00000406629 3758 ntTSL 5 BASIC7.99□□□□□ -1.13
HLA-CQ95604 PTK2B-205ENST00000420218 3941 ntTSL 5 BASIC7.99□□□□□ -1.13
HLA-CQ95604 OR10H3-201ENST00000305892 951 ntAPPRIS P1 BASIC7.99□□□□□ -1.13
HLA-CQ95604 OR52H1-201ENST00000322653 1057 ntAPPRIS P1 BASIC7.99□□□□□ -1.13
HLA-CQ95604 RIT2-201ENST00000326695 1092 ntAPPRIS P1 TSL 1 (best) BASIC7.99□□□□□ -1.13
HLA-CQ95604 MRRF-202ENST00000344641 9826 ntAPPRIS P1 TSL 2 BASIC7.99□□□□□ -1.13
HLA-CQ95604 Y_RNA.145-201ENST00000363527 102 ntBASIC7.99□□□□□ -1.13
HLA-CQ95604 FETUB-203ENST00000382136 1040 ntTSL 1 (best) BASIC7.99□□□□□ -1.13
HLA-CQ95604 SNORA70I-201ENST00000384544 135 ntBASIC7.99□□□□□ -1.13
HLA-CQ95604 RNU6-907P-201ENST00000390924 102 ntBASIC7.99□□□□□ -1.13
HLA-CQ95604 KIF20A-201ENST00000394894 3201 ntAPPRIS P1 TSL 1 (best) BASIC7.99□□□□□ -1.13
HLA-CQ95604 AL354719.1-201ENST00000406535 843 ntBASIC7.99□□□□□ -1.13
HLA-CQ95604 AL669831.2-201ENST00000422528 456 ntTSL 5 BASIC7.99□□□□□ -1.13
HLA-CQ95604 AP000997.1-201ENST00000424313 479 ntTSL 3 BASIC7.99□□□□□ -1.13
HLA-CQ95604 NIPA2P1-201ENST00000426223 976 ntBASIC7.99□□□□□ -1.13
HLA-CQ95604 AL445669.1-201ENST00000426743 755 ntBASIC7.99□□□□□ -1.13
HLA-CQ95604 WWC3-AS1-201ENST00000430057 578 ntTSL 3 BASIC7.99□□□□□ -1.13
HLA-CQ95604 AC236972.2-201ENST00000434979 310 ntBASIC7.99□□□□□ -1.13
HLA-CQ95604 MTND6P18-201ENST00000439477 513 ntBASIC7.99□□□□□ -1.13
HLA-CQ95604 AC234771.4-201ENST00000441416 730 ntBASIC7.99□□□□□ -1.13
HLA-CQ95604 AC113331.2-201ENST00000445557 926 ntAPPRIS P1 BASIC7.99□□□□□ -1.13
HLA-CQ95604 HMGN1P36-201ENST00000446623 298 ntBASIC7.99□□□□□ -1.13
HLA-CQ95604 SRP68P2-201ENST00000456184 254 ntBASIC7.99□□□□□ -1.13
HLA-CQ95604 MIR205HG-209ENST00000458250 406 ntTSL 3 BASIC7.99□□□□□ -1.13
HLA-CQ95604 AL356364.1-201ENST00000458443 182 ntTSL 3 BASIC7.99□□□□□ -1.13
HLA-CQ95604 CPHL1P-203ENST00000471823 523 ntTSL 5 BASIC7.99□□□□□ -1.13
HLA-CQ95604 AC096741.1-201ENST00000472250 846 ntBASIC7.99□□□□□ -1.13
HLA-CQ95604 GIMAP2-202ENST00000474605 309 ntTSL 3 BASIC7.99□□□□□ -1.13
HLA-CQ95604 AC079594.1-201ENST00000489757 331 ntBASIC7.99□□□□□ -1.13
HLA-CQ95604 AC112204.1-201ENST00000502591 103 ntBASIC7.99□□□□□ -1.13
HLA-CQ95604 AL445187.1-201ENST00000502685 260 ntBASIC7.99□□□□□ -1.13
HLA-CQ95604 TECRP2-201ENST00000503270 928 ntBASIC7.99□□□□□ -1.13
HLA-CQ95604 AC008629.1-202ENST00000504820 525 ntTSL 4 BASIC7.99□□□□□ -1.13
HLA-CQ95604 AC026427.2-201ENST00000506228 536 ntBASIC7.99□□□□□ -1.13
HLA-CQ95604 AC092834.1-201ENST00000506514 442 ntTSL 3 BASIC7.99□□□□□ -1.13
HLA-CQ95604 AC005920.2-201ENST00000509833 332 ntTSL 3 BASIC7.99□□□□□ -1.13
HLA-CQ95604 AC068134.3-201ENST00000513620 788 ntBASIC7.99□□□□□ -1.13
HLA-CQ95604 RNU6-277P-201ENST00000516272 106 ntBASIC7.99□□□□□ -1.13
HLA-CQ95604 TRMT10BP1-201ENST00000519377 943 ntBASIC7.99□□□□□ -1.13
HLA-CQ95604 AC091185.1-201ENST00000523840 528 ntTSL 3 BASIC7.99□□□□□ -1.13
HLA-CQ95604 AP003100.1-201ENST00000524772 832 ntTSL 3 BASIC7.99□□□□□ -1.13
HLA-CQ95604 AMPD3-208ENST00000528723 2753 ntTSL 2 BASIC7.99□□□□□ -1.13
HLA-CQ95604 AC107884.2-201ENST00000530963 550 ntTSL 4 BASIC7.99□□□□□ -1.13
HLA-CQ95604 SNHG1-212ENST00000539975 955 ntTSL 5 BASIC7.99□□□□□ -1.13
HLA-CQ95604 LIMA1-216ENST00000552909 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC7.99□□□□□ -1.13
HLA-CQ95604 LINC01841-201ENST00000586698 573 ntTSL 4 BASIC7.99□□□□□ -1.13
Retrieved 100 of 98,524 protein–RNA pairs in 81 ms