Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 CCNB3-201ENST00000276014 4513 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
CXCL12P48061 AP2B1-215ENST00000616681 3267 ntTSL 2 BASIC5.55□□□□□ -1.52
CXCL12P48061 ARIH1-201ENST00000379887 21681 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
CXCL12P48061 OR2T7-202ENST00000641557 3409 ntAPPRIS P1 BASIC5.55□□□□□ -1.52
CXCL12P48061 KCNJ10-205ENST00000638728 4351 ntAPPRIS P1 TSL 5 BASIC5.55□□□□□ -1.52
CXCL12P48061 OR2M3-202ENST00000641626 9913 ntAPPRIS P1 BASIC5.55□□□□□ -1.52
CXCL12P48061 OLFM3-201ENST00000338858 2189 ntAPPRIS ALT1 TSL 1 (best) BASIC5.55□□□□□ -1.52
CXCL12P48061 MT-RNR2-201ENST00000387347 1559 ntBASIC5.55□□□□□ -1.52
CXCL12P48061 CADM2-202ENST00000405615 1314 ntAPPRIS P3 TSL 1 (best) BASIC5.54□□□□□ -1.52
CXCL12P48061 MSR1-202ENST00000350896 3572 ntTSL 5 BASIC5.54□□□□□ -1.52
CXCL12P48061 LINC01553-203ENST00000521074 4329 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
CXCL12P48061 GRIA2-202ENST00000296526 5621 ntAPPRIS P3 TSL 1 (best) BASIC5.54□□□□□ -1.52
CXCL12P48061 TMED10-201ENST00000303575 4127 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
CXCL12P48061 AC012618.3-205ENST00000637896 1496 ntBASIC5.54□□□□□ -1.52
CXCL12P48061 PSG1-204ENST00000436291 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC5.54□□□□□ -1.52
CXCL12P48061 IKZF3-210ENST00000377958 1837 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
CXCL12P48061 CRYAB-201ENST00000227251 848 ntAPPRIS P1 TSL 5 BASIC5.54□□□□□ -1.52
CXCL12P48061 AC116036.1-201ENST00000412199 367 ntBASIC5.54□□□□□ -1.52
CXCL12P48061 TMA16P2-201ENST00000413187 601 ntBASIC5.54□□□□□ -1.52
CXCL12P48061 AL591468.1-201ENST00000417932 573 ntTSL 3 BASIC5.54□□□□□ -1.52
CXCL12P48061 AC015977.1-201ENST00000418887 292 ntBASIC5.54□□□□□ -1.52
CXCL12P48061 AP000221.1-201ENST00000419694 1046 ntTSL 3 BASIC5.54□□□□□ -1.52
CXCL12P48061 AC079790.1-201ENST00000420365 507 ntTSL 3 BASIC5.54□□□□□ -1.52
CXCL12P48061 PPP2R2DP1-201ENST00000420526 637 ntBASIC5.54□□□□□ -1.52
CXCL12P48061 LINC02083-201ENST00000462835 515 ntTSL 3 BASIC5.54□□□□□ -1.52
CXCL12P48061 PHC3-208ENST00000481639 1075 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
CXCL12P48061 CENPK-210ENST00000510354 1124 ntTSL 5 BASIC5.54□□□□□ -1.52
CXCL12P48061 AC091180.4-201ENST00000511322 245 ntTSL 2 BASIC5.54□□□□□ -1.52
CXCL12P48061 KLRD1-209ENST00000543420 802 ntTSL 5 BASIC5.54□□□□□ -1.52
CXCL12P48061 AC092490.3-201ENST00000545370 572 ntBASIC5.54□□□□□ -1.52
CXCL12P48061 AC025423.4-201ENST00000553141 785 ntTSL 3 BASIC5.54□□□□□ -1.52
CXCL12P48061 AC091544.7-201ENST00000554000 240 ntTSL 3 BASIC5.54□□□□□ -1.52
CXCL12P48061 PXT1-202ENST00000619547 619 ntAPPRIS ALT2 TSL 1 (best) BASIC5.54□□□□□ -1.52
CXCL12P48061 PCBP1-AS1-286ENST00000625888 765 ntTSL 5 BASIC5.54□□□□□ -1.52
CXCL12P48061 AC005972.4-201ENST00000636248 1131 ntTSL 5 BASIC5.54□□□□□ -1.52
CXCL12P48061 ZNF780A-204ENST00000455521 3600 ntAPPRIS ALT2 TSL 5 BASIC5.54□□□□□ -1.52
CXCL12P48061 AC005703.1-201ENST00000431343 1773 ntTSL 2 BASIC5.54□□□□□ -1.52
CXCL12P48061 DYRK1A-202ENST00000339659 8654 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
CXCL12P48061 BTN3A2-203ENST00000396934 3672 ntAPPRIS ALT2 TSL 2 BASIC5.54□□□□□ -1.52
CXCL12P48061 ASAH2-203ENST00000443575 1942 ntTSL 5 BASIC5.54□□□□□ -1.52
CXCL12P48061 OR2T7-201ENST00000641057 3463 ntAPPRIS P1 BASIC5.54□□□□□ -1.52
CXCL12P48061 LIN7C-201ENST00000278193 4688 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
CXCL12P48061 DNAJC28-202ENST00000381947 1354 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
CXCL12P48061 ZEB1-202ENST00000361642 5990 ntAPPRIS ALT2 TSL 1 (best) BASIC5.54□□□□□ -1.52
CXCL12P48061 ADGRL3-218ENST00000514996 4731 ntAPPRIS ALT2 TSL 5 BASIC5.53□□□□□ -1.52
CXCL12P48061 ZNF493-203ENST00000392288 5023 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
CXCL12P48061 AC093829.1-201ENST00000506662 1618 ntBASIC5.53□□□□□ -1.52
CXCL12P48061 A1CF-206ENST00000395489 9517 ntTSL 2 BASIC5.53□□□□□ -1.52
CXCL12P48061 SEMA3A-201ENST00000265362 8225 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
CXCL12P48061 NPM1-202ENST00000351986 1237 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
CXCL12P48061 SNORA17.1-201ENST00000362945 126 ntBASIC5.53□□□□□ -1.52
CXCL12P48061 SVBP-202ENST00000372522 650 ntAPPRIS P1 TSL 3 BASIC5.53□□□□□ -1.52
CXCL12P48061 MIR141-201ENST00000384975 95 ntBASIC5.53□□□□□ -1.52
CXCL12P48061 AC211486.3-201ENST00000412694 621 ntBASIC5.53□□□□□ -1.52
CXCL12P48061 IFNA17-201ENST00000413767 980 ntAPPRIS P1 BASIC5.53□□□□□ -1.52
CXCL12P48061 RPL26P29-201ENST00000415623 438 ntBASIC5.53□□□□□ -1.52
CXCL12P48061 SRSF1P1-201ENST00000424058 520 ntBASIC5.53□□□□□ -1.52
CXCL12P48061 AL161618.1-201ENST00000438738 761 ntTSL 5 BASIC5.53□□□□□ -1.52
CXCL12P48061 PCBP1-AS1-232ENST00000442040 1111 ntTSL 3 BASIC5.53□□□□□ -1.52
CXCL12P48061 AC009220.1-201ENST00000451614 275 ntBASIC5.53□□□□□ -1.52
CXCL12P48061 HRAT17-202ENST00000451962 687 ntTSL 5 BASIC5.53□□□□□ -1.52
CXCL12P48061 AC015864.1-201ENST00000496512 544 ntBASIC5.53□□□□□ -1.52
CXCL12P48061 AC106864.2-201ENST00000505632 740 ntTSL 2 BASIC5.53□□□□□ -1.52
CXCL12P48061 HMGB1P44-201ENST00000508597 572 ntBASIC5.53□□□□□ -1.52
CXCL12P48061 UBE2Q2P10-201ENST00000514854 900 ntBASIC5.53□□□□□ -1.52
CXCL12P48061 RN7SKP147-201ENST00000517154 244 ntBASIC5.53□□□□□ -1.52
CXCL12P48061 AC009623.1-201ENST00000517964 1131 ntTSL 2 BASIC5.53□□□□□ -1.52
CXCL12P48061 AL121790.1-201ENST00000554829 738 ntTSL 3 BASIC5.53□□□□□ -1.52
CXCL12P48061 AC087477.3-201ENST00000559214 552 ntTSL 4 BASIC5.53□□□□□ -1.52
CXCL12P48061 LINC01904-201ENST00000564872 861 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
CXCL12P48061 RPL10P14-201ENST00000565265 298 ntBASIC5.53□□□□□ -1.52
CXCL12P48061 AL121989.1-201ENST00000585888 746 ntTSL 3 BASIC5.53□□□□□ -1.52
CXCL12P48061 NANOGP3-201ENST00000605855 286 ntBASIC5.53□□□□□ -1.52
CXCL12P48061 AC012557.1-201ENST00000607115 611 ntBASIC5.53□□□□□ -1.52
CXCL12P48061 AL731566.2-201ENST00000618971 317 ntBASIC5.53□□□□□ -1.52
CXCL12P48061 OR52B4-201ENST00000624801 1124 ntAPPRIS P1 BASIC5.53□□□□□ -1.52
CXCL12P48061 PRKCQ-AS1-218ENST00000624974 1132 ntTSL 5 BASIC5.53□□□□□ -1.52
CXCL12P48061 CYP4F35P-202ENST00000636121 390 ntBASIC5.53□□□□□ -1.52
CXCL12P48061 CFAP57-204ENST00000528956 3037 ntTSL 2 BASIC5.53□□□□□ -1.52
CXCL12P48061 CASC11-201ENST00000502463 3301 ntTSL 2 BASIC5.53□□□□□ -1.52
CXCL12P48061 PLCB1-211ENST00000617005 6458 ntTSL 5 BASIC5.53□□□□□ -1.52
CXCL12P48061 AC006145.1-201ENST00000439234 2651 ntTSL 2 BASIC5.53□□□□□ -1.52
CXCL12P48061 CAST-203ENST00000338252 2972 ntAPPRIS ALT2 TSL 1 (best) BASIC5.53□□□□□ -1.52
CXCL12P48061 TPD52-203ENST00000448733 4339 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
CXCL12P48061 NELL2-201ENST00000333837 2943 ntTSL 2 BASIC5.53□□□□□ -1.52
CXCL12P48061 TGFBR1-208ENST00000550253 1538 ntTSL 2 BASIC5.53□□□□□ -1.52
CXCL12P48061 CASP10-202ENST00000286186 5928 ntAPPRIS P4 TSL 1 (best) BASIC5.53□□□□□ -1.52
CXCL12P48061 LMO3-202ENST00000320122 3759 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
CXCL12P48061 RUFY3-201ENST00000226328 4233 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
CXCL12P48061 PSMB2-202ENST00000621781 4217 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
CXCL12P48061 TMEM99-201ENST00000301665 2058 ntAPPRIS P2 TSL 2 BASIC5.52□□□□□ -1.53
CXCL12P48061 PSG1-206ENST00000595356 1903 ntAPPRIS ALT2 TSL 1 (best) BASIC5.52□□□□□ -1.53
CXCL12P48061 DNTTIP2-202ENST00000436063 5897 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
CXCL12P48061 GRIA4-204ENST00000428631 2778 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
CXCL12P48061 OR55B1P-203ENST00000641518 2602 ntBASIC5.52□□□□□ -1.53
CXCL12P48061 OAZ3-204ENST00000479764 3789 ntTSL 5 BASIC5.52□□□□□ -1.53
CXCL12P48061 LINC00630-201ENST00000416381 2012 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
CXCL12P48061 CASC8-203ENST00000502082 1420 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
CXCL12P48061 PNISR-202ENST00000438806 3142 ntAPPRIS P1 TSL 2 BASIC5.52□□□□□ -1.53
CXCL12P48061 TM9SF4-202ENST00000398022 3978 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 90.7 ms