Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 NRBF2P4-201ENST00000520874 850 ntBASIC5.49□□□□□ -1.53
SHMT2P34897 HGNC:24955-208ENST00000521585 1260 ntTSL 4 BASIC5.49□□□□□ -1.53
SHMT2P34897 AC022404.1-201ENST00000555320 273 ntBASIC5.49□□□□□ -1.53
SHMT2P34897 AC026992.1-201ENST00000558269 571 ntTSL 2 BASIC5.49□□□□□ -1.53
SHMT2P34897 AC009117.3-202ENST00000563825 557 ntTSL 4 BASIC5.49□□□□□ -1.53
SHMT2P34897 RBM22P12-201ENST00000567098 1255 ntBASIC5.49□□□□□ -1.53
SHMT2P34897 AC114947.2-202ENST00000569313 643 ntTSL 3 BASIC5.49□□□□□ -1.53
SHMT2P34897 AC012146.2-201ENST00000576545 416 ntBASIC5.49□□□□□ -1.53
SHMT2P34897 MIR4311-201ENST00000580794 100 ntBASIC5.49□□□□□ -1.53
SHMT2P34897 LINC01125-220ENST00000599501 965 ntAPPRIS ALT2 TSL 5 BASIC5.49□□□□□ -1.53
SHMT2P34897 AL035587.1-202ENST00000607218 984 ntTSL 3 BASIC5.49□□□□□ -1.53
SHMT2P34897 AL035661.1-201ENST00000620459 1144 ntBASIC5.49□□□□□ -1.53
SHMT2P34897 SNHG5-214ENST00000623001 598 ntTSL 2 BASIC5.49□□□□□ -1.53
SHMT2P34897 LINC01620-204ENST00000623295 700 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
SHMT2P34897 AC239809.3-202ENST00000628902 686 ntTSL 5 BASIC5.49□□□□□ -1.53
SHMT2P34897 OR51Q1-202ENST00000641085 1096 ntAPPRIS P1 BASIC5.49□□□□□ -1.53
SHMT2P34897 PDE5A-203ENST00000394439 6770 ntAPPRIS ALT2 TSL 5 BASIC5.49□□□□□ -1.53
SHMT2P34897 FGL1-209ENST00000522444 1367 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
SHMT2P34897 SEMA6D-210ENST00000558816 4419 ntTSL 5 BASIC5.49□□□□□ -1.53
SHMT2P34897 ATXN7-208ENST00000484332 2741 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
SHMT2P34897 DDX58-201ENST00000379868 4089 ntTSL 5 BASIC5.49□□□□□ -1.53
SHMT2P34897 KSR2-201ENST00000339824 17726 ntAPPRIS P1 TSL 5 BASIC5.49□□□□□ -1.53
SHMT2P34897 SERPINB7-207ENST00000546027 1951 ntAPPRIS P1 TSL 2 BASIC5.49□□□□□ -1.53
SHMT2P34897 KLHL28-201ENST00000355081 2177 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
SHMT2P34897 C15orf54-202ENST00000625107 3078 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
SHMT2P34897 IBTK-206ENST00000503631 3560 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
SHMT2P34897 AC114786.1-201ENST00000512892 1415 ntBASIC5.48□□□□□ -1.53
SHMT2P34897 MMAA-205ENST00000541599 1437 ntTSL 5 BASIC5.48□□□□□ -1.53
SHMT2P34897 PSG9-202ENST00000270077 1705 ntAPPRIS P2 TSL 1 (best) BASIC5.48□□□□□ -1.53
SHMT2P34897 AFP-201ENST00000226359 1914 ntTSL 5 BASIC5.48□□□□□ -1.53
SHMT2P34897 RBMX-203ENST00000431446 2004 ntTSL 2 BASIC5.48□□□□□ -1.53
SHMT2P34897 VPS50-202ENST00000305866 3613 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
SHMT2P34897 ERCC6L-201ENST00000334463 4243 ntAPPRIS P2 TSL 1 (best) BASIC5.48□□□□□ -1.53
SHMT2P34897 DCDC1-203ENST00000406071 4758 ntAPPRIS P2 TSL 5 BASIC5.48□□□□□ -1.53
SHMT2P34897 LINC02019-201ENST00000608605 2060 ntBASIC5.48□□□□□ -1.53
SHMT2P34897 SLC12A1-201ENST00000330289 1764 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
SHMT2P34897 FAM72B-201ENST00000355228 1773 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
SHMT2P34897 MEMO1-202ENST00000379383 1498 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
SHMT2P34897 AC120036.2-201ENST00000509729 1474 ntBASIC5.48□□□□□ -1.53
SHMT2P34897 AC005261.6-201ENST00000623072 1387 ntBASIC5.48□□□□□ -1.53
SHMT2P34897 AGBL4-201ENST00000334103 881 ntTSL 5 BASIC5.48□□□□□ -1.53
SHMT2P34897 AL596448.1-201ENST00000415024 392 ntBASIC5.48□□□□□ -1.53
SHMT2P34897 AP001476.3-201ENST00000429512 415 ntTSL 3 BASIC5.48□□□□□ -1.53
SHMT2P34897 USP12-AS1-201ENST00000440657 268 ntTSL 5 BASIC5.48□□□□□ -1.53
SHMT2P34897 CD200R1L-202ENST00000448932 750 ntAPPRIS ALT2 TSL 5 BASIC5.48□□□□□ -1.53
SHMT2P34897 AL157371.1-201ENST00000451910 394 ntTSL 3 BASIC5.48□□□□□ -1.53
SHMT2P34897 OARD1-207ENST00000468811 819 ntAPPRIS P1 TSL 2 BASIC5.48□□□□□ -1.53
SHMT2P34897 RN7SL717P-201ENST00000478343 297 ntBASIC5.48□□□□□ -1.53
SHMT2P34897 LINC02502-201ENST00000505122 642 ntTSL 4 BASIC5.48□□□□□ -1.53
SHMT2P34897 ANKRD49-206ENST00000540349 573 ntTSL 4 BASIC5.48□□□□□ -1.53
SHMT2P34897 AC139697.1-201ENST00000548429 745 ntBASIC5.48□□□□□ -1.53
SHMT2P34897 HSPE1P2-201ENST00000554777 306 ntBASIC5.48□□□□□ -1.53
SHMT2P34897 AC009019.1-203ENST00000568603 515 ntTSL 5 BASIC5.48□□□□□ -1.53
SHMT2P34897 CASC22-201ENST00000569713 386 ntTSL 5 BASIC5.48□□□□□ -1.53
SHMT2P34897 AC090286.3-201ENST00000573133 187 ntBASIC5.48□□□□□ -1.53
SHMT2P34897 AC027216.1-201ENST00000577726 685 ntBASIC5.48□□□□□ -1.53
SHMT2P34897 PIK3C3-207ENST00000587402 452 ntTSL 3 BASIC5.48□□□□□ -1.53
SHMT2P34897 VDAC1P8-204ENST00000589489 997 ntTSL 5 BASIC5.48□□□□□ -1.53
SHMT2P34897 AC008115.3-201ENST00000614874 549 ntBASIC5.48□□□□□ -1.53
SHMT2P34897 SERPINB10-204ENST00000619595 1194 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
SHMT2P34897 CU639417.4-201ENST00000623928 207 ntBASIC5.48□□□□□ -1.53
SHMT2P34897 AL691477.1-201ENST00000624398 162 ntBASIC5.48□□□□□ -1.53
SHMT2P34897 MIR4302-201ENST00000638058 60 ntBASIC5.48□□□□□ -1.53
SHMT2P34897 EPS8-207ENST00000540613 2204 ntTSL 2 BASIC5.48□□□□□ -1.53
SHMT2P34897 PTBP3-207ENST00000458258 7995 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
SHMT2P34897 MAPK10-328ENST00000641553 4009 ntBASIC5.48□□□□□ -1.53
SHMT2P34897 KIAA1328-202ENST00000586135 1863 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
SHMT2P34897 AC068870.3-201ENST00000625077 2536 ntBASIC5.47□□□□□ -1.53
SHMT2P34897 SAMD9L-204ENST00000437805 5757 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
SHMT2P34897 MCM3AP-AS1-204ENST00000432735 2302 ntTSL 2 BASIC5.47□□□□□ -1.53
SHMT2P34897 ZNF559-ZNF177-201ENST00000434737 2340 ntAPPRIS ALT2 TSL 2 BASIC5.47□□□□□ -1.53
SHMT2P34897 URI1-201ENST00000360605 1579 ntAPPRIS ALT2 TSL 1 (best) BASIC5.47□□□□□ -1.53
SHMT2P34897 AC006145.1-201ENST00000439234 2651 ntTSL 2 BASIC5.47□□□□□ -1.53
SHMT2P34897 LINC02352-202ENST00000559292 1450 ntTSL 5 BASIC5.47□□□□□ -1.53
SHMT2P34897 RAB30-212ENST00000533486 9929 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
SHMT2P34897 OTUD4-202ENST00000454497 7069 ntTSL 2 BASIC5.47□□□□□ -1.53
SHMT2P34897 GJA9-202ENST00000360786 1901 ntAPPRIS P1 BASIC5.47□□□□□ -1.53
SHMT2P34897 INO80D-201ENST00000403263 14136 ntAPPRIS P1 TSL 5 BASIC5.47□□□□□ -1.53
SHMT2P34897 RNU1-136P-201ENST00000384181 164 ntBASIC5.47□□□□□ -1.53
SHMT2P34897 AC079809.1-201ENST00000415468 276 ntBASIC5.47□□□□□ -1.53
SHMT2P34897 RNF10P1-201ENST00000418589 369 ntBASIC5.47□□□□□ -1.53
SHMT2P34897 TNPO1P1-201ENST00000423641 1138 ntBASIC5.47□□□□□ -1.53
SHMT2P34897 MGAT2P2-201ENST00000427194 797 ntBASIC5.47□□□□□ -1.53
SHMT2P34897 TMEM183AP1-205ENST00000432739 290 ntBASIC5.47□□□□□ -1.53
SHMT2P34897 FMO7P-201ENST00000436045 768 ntBASIC5.47□□□□□ -1.53
SHMT2P34897 AC006335.2-201ENST00000437993 330 ntBASIC5.47□□□□□ -1.53
SHMT2P34897 AL391987.1-201ENST00000441025 200 ntBASIC5.47□□□□□ -1.53
SHMT2P34897 AL392089.1-202ENST00000444793 449 ntTSL 2 BASIC5.47□□□□□ -1.53
SHMT2P34897 AP001604.1-201ENST00000447384 954 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
SHMT2P34897 RN7SL72P-201ENST00000460697 269 ntBASIC5.47□□□□□ -1.53
SHMT2P34897 RN7SL197P-201ENST00000466981 299 ntBASIC5.47□□□□□ -1.53
SHMT2P34897 RN7SL174P-201ENST00000475578 289 ntBASIC5.47□□□□□ -1.53
SHMT2P34897 AC068672.3-203ENST00000505166 311 ntTSL 3 BASIC5.47□□□□□ -1.53
SHMT2P34897 DUTP7-201ENST00000507982 486 ntBASIC5.47□□□□□ -1.53
SHMT2P34897 LINC02057-202ENST00000511794 577 ntTSL 3 BASIC5.47□□□□□ -1.53
SHMT2P34897 AC074087.1-201ENST00000512059 724 ntBASIC5.47□□□□□ -1.53
SHMT2P34897 AC064802.1-201ENST00000521523 866 ntTSL 2 BASIC5.47□□□□□ -1.53
SHMT2P34897 AC106729.1-201ENST00000567777 466 ntTSL 3 BASIC5.47□□□□□ -1.53
SHMT2P34897 AC016839.1-201ENST00000578162 867 ntBASIC5.47□□□□□ -1.53
SHMT2P34897 AC011473.2-201ENST00000596286 240 ntTSL 3 BASIC5.47□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 74.6 ms