Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 IFNA17-201ENST00000413767 980 ntAPPRIS P1 BASIC6.3□□□□□ -1.4
BDNFP23560 HMGA1P8-201ENST00000414130 321 ntBASIC6.3□□□□□ -1.4
BDNFP23560 AL035660.1-201ENST00000422041 222 ntBASIC6.3□□□□□ -1.4
BDNFP23560 AL162727.2-201ENST00000428429 395 ntTSL 3 BASIC6.3□□□□□ -1.4
BDNFP23560 AC023481.1-201ENST00000435368 938 ntTSL 3 BASIC6.3□□□□□ -1.4
BDNFP23560 RPL12P18-201ENST00000437175 325 ntBASIC6.3□□□□□ -1.4
BDNFP23560 Z99127.2-201ENST00000441426 334 ntBASIC6.3□□□□□ -1.4
BDNFP23560 MEOX2-AS1-201ENST00000442176 697 ntTSL 3 BASIC6.3□□□□□ -1.4
BDNFP23560 AL157827.1-201ENST00000447622 132 ntBASIC6.3□□□□□ -1.4
BDNFP23560 LINC01809-201ENST00000448431 303 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
BDNFP23560 AP006222.1-205ENST00000450734 457 ntBASIC6.3□□□□□ -1.4
BDNFP23560 ACA64.4-201ENST00000459070 127 ntBASIC6.3□□□□□ -1.4
BDNFP23560 AC011476.1-201ENST00000466725 307 ntBASIC6.3□□□□□ -1.4
BDNFP23560 RN7SL188P-201ENST00000469842 285 ntBASIC6.3□□□□□ -1.4
BDNFP23560 RABGAP1L-214ENST00000478442 648 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
BDNFP23560 HMGB3P14-201ENST00000494195 599 ntBASIC6.3□□□□□ -1.4
BDNFP23560 SNORD46.2-201ENST00000516021 102 ntBASIC6.3□□□□□ -1.4
BDNFP23560 AC062004.1-202ENST00000524014 246 ntTSL 5 BASIC6.3□□□□□ -1.4
BDNFP23560 EIF4A2P3-201ENST00000525903 1055 ntBASIC6.3□□□□□ -1.4
BDNFP23560 AP001267.3-202ENST00000525992 448 ntTSL 3 BASIC6.3□□□□□ -1.4
BDNFP23560 AC090651.1-201ENST00000567865 634 ntBASIC6.3□□□□□ -1.4
BDNFP23560 AC008521.2-201ENST00000591021 259 ntBASIC6.3□□□□□ -1.4
BDNFP23560 AC135803.1-201ENST00000608748 565 ntBASIC6.3□□□□□ -1.4
BDNFP23560 Metazoa_SRP.70-201ENST00000612622 273 ntBASIC6.3□□□□□ -1.4
BDNFP23560 AC018659.2-201ENST00000624690 715 ntBASIC6.3□□□□□ -1.4
BDNFP23560 AL357060.1-201ENST00000638039 977 ntTSL 5 BASIC6.3□□□□□ -1.4
BDNFP23560 FANCD2-203ENST00000419585 5185 ntAPPRIS ALT2 TSL 1 (best) BASIC6.3□□□□□ -1.4
BDNFP23560 ZNF737-201ENST00000427401 2867 ntAPPRIS P1 TSL 2 BASIC6.3□□□□□ -1.4
BDNFP23560 CYBB-201ENST00000378588 4324 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
BDNFP23560 DDHD2-202ENST00000517385 4113 ntTSL 2 BASIC6.3□□□□□ -1.4
BDNFP23560 NAPEPLD-203ENST00000417955 4988 ntAPPRIS P1 TSL 5 BASIC6.29□□□□□ -1.4
BDNFP23560 CDKL5-205ENST00000623535 12533 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
BDNFP23560 ATF7IP2-204ENST00000396560 3665 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
BDNFP23560 PGBD4-201ENST00000397766 6612 ntAPPRIS P1 BASIC6.29□□□□□ -1.4
BDNFP23560 HELZ-207ENST00000580168 6279 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
BDNFP23560 ANKRD26P1-204ENST00000571006 4741 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
BDNFP23560 PSG4-201ENST00000244295 1629 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
BDNFP23560 SSH2-204ENST00000540801 4538 ntAPPRIS ALT2 TSL 2 BASIC6.29□□□□□ -1.4
BDNFP23560 MMRN1-202ENST00000394980 5217 ntAPPRIS P1 TSL 5 BASIC6.29□□□□□ -1.4
BDNFP23560 OR4S2-201ENST00000312422 936 ntAPPRIS P1 BASIC6.29□□□□□ -1.4
BDNFP23560 OR52B3P-201ENST00000314715 928 ntBASIC6.29□□□□□ -1.4
BDNFP23560 ART3-203ENST00000355810 1561 ntAPPRIS ALT2 TSL 1 (best) BASIC6.29□□□□□ -1.4
BDNFP23560 RNU6-152P-201ENST00000384037 107 ntBASIC6.29□□□□□ -1.4
BDNFP23560 AC079630.1-201ENST00000412812 585 ntTSL 4 BASIC6.29□□□□□ -1.4
BDNFP23560 AL391704.3-201ENST00000425365 831 ntTSL 3 BASIC6.29□□□□□ -1.4
BDNFP23560 NPM1P18-201ENST00000434232 732 ntBASIC6.29□□□□□ -1.4
BDNFP23560 AL137186.1-201ENST00000440436 480 ntTSL 3 BASIC6.29□□□□□ -1.4
BDNFP23560 AP002345.1-201ENST00000456493 928 ntBASIC6.29□□□□□ -1.4
BDNFP23560 UBFD1P1-201ENST00000473259 814 ntBASIC6.29□□□□□ -1.4
BDNFP23560 AC008945.1-201ENST00000505144 499 ntBASIC6.29□□□□□ -1.4
BDNFP23560 MGST2-204ENST00000506797 634 ntTSL 2 BASIC6.29□□□□□ -1.4
BDNFP23560 FABP5P6-201ENST00000510588 409 ntBASIC6.29□□□□□ -1.4
BDNFP23560 AC108120.2-201ENST00000512973 294 ntBASIC6.29□□□□□ -1.4
BDNFP23560 AC027343.2-201ENST00000513219 343 ntTSL 3 BASIC6.29□□□□□ -1.4
BDNFP23560 CYP4F27P-201ENST00000514557 494 ntBASIC6.29□□□□□ -1.4
BDNFP23560 AC097537.1-201ENST00000514864 1213 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
BDNFP23560 RNU6-760P-201ENST00000516078 97 ntBASIC6.29□□□□□ -1.4
BDNFP23560 LINC01033-204ENST00000523194 715 ntTSL 2 BASIC6.29□□□□□ -1.4
BDNFP23560 C11orf74-210ENST00000534635 801 ntAPPRIS ALT2 TSL 2 BASIC6.29□□□□□ -1.4
BDNFP23560 LINC01234-204ENST00000550905 589 ntTSL 3 BASIC6.29□□□□□ -1.4
BDNFP23560 AL356801.1-201ENST00000559320 294 ntBASIC6.29□□□□□ -1.4
BDNFP23560 AC100821.2-201ENST00000565668 440 ntTSL 2 BASIC6.29□□□□□ -1.4
BDNFP23560 MIR3614-201ENST00000581261 86 ntBASIC6.29□□□□□ -1.4
BDNFP23560 MIR132-201ENST00000591554 101 ntBASIC6.29□□□□□ -1.4
BDNFP23560 CT45A1-202ENST00000594565 1007 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
BDNFP23560 AC008750.7-201ENST00000600765 559 ntTSL 4 BASIC6.29□□□□□ -1.4
BDNFP23560 AC004890.3-201ENST00000605566 1095 ntBASIC6.29□□□□□ -1.4
BDNFP23560 AC026124.2-201ENST00000621847 656 ntBASIC6.29□□□□□ -1.4
BDNFP23560 ASAH1-232ENST00000636691 2472 ntTSL 5 BASIC6.29□□□□□ -1.4
BDNFP23560 FAM49B-230ENST00000639004 837 ntTSL 5 BASIC6.29□□□□□ -1.4
BDNFP23560 MFSD8-239ENST00000641590 2479 ntBASIC6.29□□□□□ -1.4
BDNFP23560 DAZ2-204ENST00000382431 3637 ntAPPRIS ALT2 TSL 1 (best) BASIC6.29□□□□□ -1.4
BDNFP23560 DBT-201ENST00000370131 1521 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
BDNFP23560 PDE10A-203ENST00000539869 4401 ntAPPRIS ALT2 TSL 1 (best) BASIC6.29□□□□□ -1.4
BDNFP23560 AASDH-203ENST00000502617 3004 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
BDNFP23560 SOCS5P3-201ENST00000425115 1576 ntBASIC6.28□□□□□ -1.4
BDNFP23560 DTNA-229ENST00000598142 2509 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
BDNFP23560 RBM44-206ENST00000611254 1427 ntTSL 2 BASIC6.28□□□□□ -1.4
BDNFP23560 ERBIN-208ENST00000506030 4386 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
BDNFP23560 PRSS37-201ENST00000350549 1189 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
BDNFP23560 RNU2-50P-201ENST00000410494 143 ntBASIC6.28□□□□□ -1.4
BDNFP23560 AL355300.1-201ENST00000412439 187 ntTSL 3 BASIC6.28□□□□□ -1.4
BDNFP23560 LINC00161-201ENST00000412526 870 ntTSL 2 BASIC6.28□□□□□ -1.4
BDNFP23560 FO393401.1-203ENST00000416260 486 ntTSL 5 BASIC6.28□□□□□ -1.4
BDNFP23560 AC092687.1-201ENST00000418835 389 ntTSL 3 BASIC6.28□□□□□ -1.4
BDNFP23560 C14orf105-202ENST00000422976 1153 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
BDNFP23560 AC099677.3-201ENST00000427081 395 ntBASIC6.28□□□□□ -1.4
BDNFP23560 AC019117.1-202ENST00000439046 589 ntTSL 3 BASIC6.28□□□□□ -1.4
BDNFP23560 AL353898.1-201ENST00000444055 238 ntBASIC6.28□□□□□ -1.4
BDNFP23560 RNF219-AS1-202ENST00000444769 590 ntTSL 4 BASIC6.28□□□□□ -1.4
BDNFP23560 AL589765.3-201ENST00000446084 462 ntBASIC6.28□□□□□ -1.4
BDNFP23560 CATSPER2P1-205ENST00000446479 419 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
BDNFP23560 RAET1E-AS1-201ENST00000446954 491 ntTSL 2 BASIC6.28□□□□□ -1.4
BDNFP23560 RPL7L1P1-201ENST00000448259 785 ntBASIC6.28□□□□□ -1.4
BDNFP23560 GTPBP8-204ENST00000467752 686 ntTSL 5 BASIC6.28□□□□□ -1.4
BDNFP23560 RN7SL57P-201ENST00000493687 290 ntBASIC6.28□□□□□ -1.4
BDNFP23560 AC015864.1-201ENST00000496512 544 ntBASIC6.28□□□□□ -1.4
BDNFP23560 SNORA48.9-201ENST00000516419 162 ntBASIC6.28□□□□□ -1.4
BDNFP23560 AP000648.1-201ENST00000529682 397 ntBASIC6.28□□□□□ -1.4
BDNFP23560 TCEANC-205ENST00000544987 1146 ntTSL 5 BASIC6.28□□□□□ -1.4
Retrieved 100 of 98,524 protein–RNA pairs in 81.8 ms