Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 AC103855.3-201ENST00000528445 606 ntTSL 5 BASIC5.06□□□□□ -1.6
SKA3Q8IX90 AP001267.3-204ENST00000528578 423 ntTSL 3 BASIC5.06□□□□□ -1.6
SKA3Q8IX90 PIWIL4-203ENST00000537419 831 ntTSL 2 BASIC5.06□□□□□ -1.6
SKA3Q8IX90 OR52E8-201ENST00000537935 1061 ntAPPRIS P1 BASIC5.06□□□□□ -1.6
SKA3Q8IX90 AC012555.2-201ENST00000549448 413 ntTSL 3 BASIC5.06□□□□□ -1.6
SKA3Q8IX90 AC096996.1-201ENST00000563813 325 ntBASIC5.06□□□□□ -1.6
SKA3Q8IX90 MIR4260-201ENST00000583107 67 ntBASIC5.06□□□□□ -1.6
SKA3Q8IX90 SSX4B-201ENST00000595235 1221 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
SKA3Q8IX90 SSX4-201ENST00000595689 1221 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
SKA3Q8IX90 AL365181.4-201ENST00000609800 547 ntBASIC5.06□□□□□ -1.6
SKA3Q8IX90 NADK2-211ENST00000617628 744 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
SKA3Q8IX90 RDM1-226ENST00000619828 687 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
SKA3Q8IX90 AC022919.1-201ENST00000624979 626 ntBASIC5.06□□□□□ -1.6
SKA3Q8IX90 AL357060.1-201ENST00000638039 977 ntTSL 5 BASIC5.06□□□□□ -1.6
SKA3Q8IX90 AC092376.2-201ENST00000622621 4116 ntBASIC5.06□□□□□ -1.6
SKA3Q8IX90 RBMY1F-201ENST00000303766 1887 ntAPPRIS P5 TSL 1 (best) BASIC5.06□□□□□ -1.6
SKA3Q8IX90 CAV1-205ENST00000405348 2443 ntAPPRIS ALT1 TSL 5 BASIC5.06□□□□□ -1.6
SKA3Q8IX90 CARD6-201ENST00000254691 4221 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
SKA3Q8IX90 DST-202ENST00000312431 17756 ntAPPRIS P2 TSL 5 BASIC5.06□□□□□ -1.6
SKA3Q8IX90 OR4G1P-202ENST00000641173 1788 ntBASIC5.06□□□□□ -1.6
SKA3Q8IX90 LINC00598-206ENST00000615947 3541 ntTSL 4 BASIC5.06□□□□□ -1.6
SKA3Q8IX90 AC008695.1-201ENST00000514667 6393 ntAPPRIS P1 TSL 2 BASIC5.06□□□□□ -1.6
SKA3Q8IX90 MIA3-203ENST00000344922 8142 ntAPPRIS P2 TSL 5 BASIC5.05□□□□□ -1.6
SKA3Q8IX90 GVINP1-202ENST00000531871 7271 ntBASIC5.05□□□□□ -1.6
SKA3Q8IX90 ZNF26-201ENST00000328654 17601 ntAPPRIS P3 TSL 1 (best) BASIC5.05□□□□□ -1.6
SKA3Q8IX90 SYTL2-208ENST00000524452 2733 ntAPPRIS P3 TSL 2 BASIC5.05□□□□□ -1.6
SKA3Q8IX90 NOL4-202ENST00000535384 1853 ntTSL 2 BASIC5.05□□□□□ -1.6
SKA3Q8IX90 BCL2L14-213ENST00000589718 1850 ntAPPRIS P1 TSL 5 BASIC5.05□□□□□ -1.6
SKA3Q8IX90 WDPCP-202ENST00000398544 2063 ntAPPRIS ALT2 TSL 1 (best) BASIC5.05□□□□□ -1.6
SKA3Q8IX90 MTERF1-203ENST00000419292 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC5.05□□□□□ -1.6
SKA3Q8IX90 EMC2-201ENST00000220853 1243 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
SKA3Q8IX90 OR6K2-201ENST00000359610 975 ntAPPRIS P1 BASIC5.05□□□□□ -1.6
SKA3Q8IX90 RN7SKP74-201ENST00000362849 309 ntBASIC5.05□□□□□ -1.6
SKA3Q8IX90 RNA5SP91-201ENST00000390902 119 ntBASIC5.05□□□□□ -1.6
SKA3Q8IX90 CCL8-201ENST00000394620 1261 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
SKA3Q8IX90 OR7E101P-201ENST00000400428 513 ntBASIC5.05□□□□□ -1.6
SKA3Q8IX90 HIST1H3PS1-201ENST00000404612 417 ntBASIC5.05□□□□□ -1.6
SKA3Q8IX90 SLC20A1P1-201ENST00000413906 956 ntBASIC5.05□□□□□ -1.6
SKA3Q8IX90 AK4P4-201ENST00000419465 646 ntBASIC5.05□□□□□ -1.6
SKA3Q8IX90 AC068631.1-204ENST00000428501 534 ntTSL 3 BASIC5.05□□□□□ -1.6
SKA3Q8IX90 MED28P3-201ENST00000444288 531 ntBASIC5.05□□□□□ -1.6
SKA3Q8IX90 OR7E116P-201ENST00000448529 957 ntBASIC5.05□□□□□ -1.6
SKA3Q8IX90 C2orf80-206ENST00000451346 979 ntTSL 5 BASIC5.05□□□□□ -1.6
SKA3Q8IX90 RPL12P39-201ENST00000455456 496 ntBASIC5.05□□□□□ -1.6
SKA3Q8IX90 AC094085.1-201ENST00000468914 584 ntBASIC5.05□□□□□ -1.6
SKA3Q8IX90 RPS17P15-201ENST00000475609 349 ntBASIC5.05□□□□□ -1.6
SKA3Q8IX90 PHC3-208ENST00000481639 1075 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
SKA3Q8IX90 AC092916.1-201ENST00000497896 411 ntTSL 3 BASIC5.05□□□□□ -1.6
SKA3Q8IX90 AF250324.1-203ENST00000508156 517 ntTSL 3 BASIC5.05□□□□□ -1.6
SKA3Q8IX90 SCARNA6.1-201ENST00000516989 238 ntBASIC5.05□□□□□ -1.6
SKA3Q8IX90 AC021678.3-201ENST00000517893 476 ntBASIC5.05□□□□□ -1.6
SKA3Q8IX90 AP001085.1-201ENST00000524441 639 ntTSL 2 BASIC5.05□□□□□ -1.6
SKA3Q8IX90 AC025419.1-207ENST00000546198 1072 ntTSL 3 BASIC5.05□□□□□ -1.6
SKA3Q8IX90 AC079950.1-201ENST00000551229 568 ntTSL 4 BASIC5.05□□□□□ -1.6
SKA3Q8IX90 AC055874.1-201ENST00000561458 479 ntTSL 2 BASIC5.05□□□□□ -1.6
SKA3Q8IX90 AC106729.1-201ENST00000567777 466 ntTSL 3 BASIC5.05□□□□□ -1.6
SKA3Q8IX90 NDUFA5P11-201ENST00000567995 343 ntBASIC5.05□□□□□ -1.6
SKA3Q8IX90 AC115989.2-201ENST00000578640 563 ntBASIC5.05□□□□□ -1.6
SKA3Q8IX90 AP001542.1-201ENST00000591314 200 ntBASIC5.05□□□□□ -1.6
SKA3Q8IX90 AC092944.2-201ENST00000605443 889 ntBASIC5.05□□□□□ -1.6
SKA3Q8IX90 MIR6778-201ENST00000617912 73 ntBASIC5.05□□□□□ -1.6
SKA3Q8IX90 AC005618.4-201ENST00000625053 554 ntBASIC5.05□□□□□ -1.6
SKA3Q8IX90 AC007750.1-202ENST00000418968 4098 ntTSL 5 BASIC5.05□□□□□ -1.6
SKA3Q8IX90 RBMX-203ENST00000431446 2004 ntTSL 2 BASIC5.05□□□□□ -1.6
SKA3Q8IX90 RNF32-203ENST00000392741 2260 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
SKA3Q8IX90 TRPC4-202ENST00000355779 2784 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
SKA3Q8IX90 AC011933.2-201ENST00000578539 2790 ntBASIC5.05□□□□□ -1.6
SKA3Q8IX90 YPEL5-202ENST00000379519 2499 ntAPPRIS P1 TSL 2 BASIC5.05□□□□□ -1.6
SKA3Q8IX90 TRIM64B-201ENST00000329862 2689 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
SKA3Q8IX90 ATF2-212ENST00000426833 4132 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
SKA3Q8IX90 RALYL-211ENST00000523850 1684 ntTSL 2 BASIC5.05□□□□□ -1.6
SKA3Q8IX90 MCM3AP-AS1-204ENST00000432735 2302 ntTSL 2 BASIC5.05□□□□□ -1.6
SKA3Q8IX90 EEF1A1P14-201ENST00000421195 1376 ntBASIC5.04□□□□□ -1.6
SKA3Q8IX90 AMD1-204ENST00000368885 3438 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
SKA3Q8IX90 MCM9-209ENST00000619706 4822 ntAPPRIS P1 TSL 5 BASIC5.04□□□□□ -1.6
SKA3Q8IX90 ZNF334-203ENST00000593880 2635 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
SKA3Q8IX90 ZNF431-201ENST00000311048 13894 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
SKA3Q8IX90 ADGB-205ENST00000397944 5325 ntAPPRIS P5 TSL 5 BASIC5.04□□□□□ -1.6
SKA3Q8IX90 OR52B3P-201ENST00000314715 928 ntBASIC5.04□□□□□ -1.6
SKA3Q8IX90 AC023490.2-201ENST00000359859 470 ntBASIC5.04□□□□□ -1.6
SKA3Q8IX90 ZCCHC6-203ENST00000375948 958 ntTSL 2 BASIC5.04□□□□□ -1.6
SKA3Q8IX90 OR6C1-201ENST00000379668 1064 ntAPPRIS P1 BASIC5.04□□□□□ -1.6
SKA3Q8IX90 OOSP1-201ENST00000398992 1270 ntBASIC5.04□□□□□ -1.6
SKA3Q8IX90 TOMM7-203ENST00000405021 455 ntTSL 2 BASIC5.04□□□□□ -1.6
SKA3Q8IX90 KCNJ13-202ENST00000409779 1099 ntTSL 2 BASIC5.04□□□□□ -1.6
SKA3Q8IX90 NIFKP3-201ENST00000417799 865 ntBASIC5.04□□□□□ -1.6
SKA3Q8IX90 KCNMA1-AS3-201ENST00000418515 701 ntTSL 3 BASIC5.04□□□□□ -1.6
SKA3Q8IX90 VN1R21P-201ENST00000426703 765 ntBASIC5.04□□□□□ -1.6
SKA3Q8IX90 KCTD9P1-201ENST00000430462 1167 ntBASIC5.04□□□□□ -1.6
SKA3Q8IX90 AC074011.1-201ENST00000431376 581 ntTSL 4 BASIC5.04□□□□□ -1.6
SKA3Q8IX90 HTR3E-AS1-201ENST00000431427 515 ntTSL 4 BASIC5.04□□□□□ -1.6
SKA3Q8IX90 AC012368.1-201ENST00000438115 552 ntTSL 3 BASIC5.04□□□□□ -1.6
SKA3Q8IX90 AL356309.2-201ENST00000454034 719 ntTSL 5 BASIC5.04□□□□□ -1.6
SKA3Q8IX90 BBIP1-208ENST00000454061 812 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
SKA3Q8IX90 AC105021.1-201ENST00000455347 590 ntTSL 3 BASIC5.04□□□□□ -1.6
SKA3Q8IX90 RPSAP37-201ENST00000470913 821 ntBASIC5.04□□□□□ -1.6
SKA3Q8IX90 RPL32P33-201ENST00000487023 394 ntBASIC5.04□□□□□ -1.6
SKA3Q8IX90 AC009120.1-201ENST00000493458 473 ntBASIC5.04□□□□□ -1.6
SKA3Q8IX90 AC080013.1-206ENST00000496842 712 ntTSL 2 BASIC5.04□□□□□ -1.6
SKA3Q8IX90 AC124242.1-202ENST00000499554 1052 ntTSL 3 BASIC5.04□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 95.5 ms