Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 PRELID3BP3-201ENST00000584963 545 ntBASIC5.84□□□□□ -1.47
COL4A4P53420 DNAH12-203ENST00000389536 2613 ntTSL 5 BASIC5.84□□□□□ -1.47
COL4A4P53420 PDS5B-201ENST00000315596 7497 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
COL4A4P53420 ZNF418-205ENST00000595830 3543 ntAPPRIS P3 TSL 1 (best) BASIC5.84□□□□□ -1.48
COL4A4P53420 ADH4-207ENST00000505590 1400 ntTSL 5 BASIC5.84□□□□□ -1.48
COL4A4P53420 SF3B1-201ENST00000335508 6526 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.48
COL4A4P53420 AC006058.1-201ENST00000568686 5067 ntBASIC5.84□□□□□ -1.48
COL4A4P53420 ZFY-202ENST00000383052 5113 ntAPPRIS P1 TSL 5 BASIC5.84□□□□□ -1.48
COL4A4P53420 GALK2-201ENST00000327171 5299 ntTSL 1 (best) BASIC5.84□□□□□ -1.48
COL4A4P53420 PHACTR4-201ENST00000373836 3107 ntAPPRIS P4 TSL 5 BASIC5.84□□□□□ -1.48
COL4A4P53420 OPRM1-219ENST00000522555 2440 ntTSL 1 (best) BASIC5.84□□□□□ -1.48
COL4A4P53420 DOCK4-AS1-201ENST00000452714 2494 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
COL4A4P53420 LINC02183-201ENST00000637822 1732 ntTSL 5 BASIC5.83□□□□□ -1.48
COL4A4P53420 PRDM2-201ENST00000235372 7957 ntAPPRIS P4 TSL 1 (best) BASIC5.83□□□□□ -1.48
COL4A4P53420 GABRB3-216ENST00000628124 5581 ntTSL 2 BASIC5.83□□□□□ -1.48
COL4A4P53420 KIF13A-205ENST00000378843 5707 ntAPPRIS ALT2 TSL 1 (best) BASIC5.83□□□□□ -1.48
COL4A4P53420 ZNF486-201ENST00000335117 3837 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
COL4A4P53420 GBA3-205ENST00000511446 2018 ntTSL 2 BASIC5.83□□□□□ -1.48
COL4A4P53420 AC127164.1-201ENST00000548738 4196 ntTSL 2 BASIC5.83□□□□□ -1.48
COL4A4P53420 FBXO3-213ENST00000534136 3217 ntTSL 5 BASIC5.83□□□□□ -1.48
COL4A4P53420 RPL34-AS1-202ENST00000507248 3713 ntTSL 2 BASIC5.83□□□□□ -1.48
COL4A4P53420 MIR192-201ENST00000384915 110 ntBASIC5.83□□□□□ -1.48
COL4A4P53420 RNA5SP487-201ENST00000410186 122 ntBASIC5.83□□□□□ -1.48
COL4A4P53420 AL049745.1-201ENST00000433953 286 ntBASIC5.83□□□□□ -1.48
COL4A4P53420 AC007327.2-201ENST00000440788 457 ntTSL 3 BASIC5.83□□□□□ -1.48
COL4A4P53420 HNRNPDLP2-201ENST00000455248 751 ntBASIC5.83□□□□□ -1.48
COL4A4P53420 RN7SL205P-201ENST00000490174 284 ntBASIC5.83□□□□□ -1.48
COL4A4P53420 AC009623.1-201ENST00000517964 1131 ntTSL 2 BASIC5.83□□□□□ -1.48
COL4A4P53420 AP001574.1-201ENST00000519566 546 ntTSL 4 BASIC5.83□□□□□ -1.48
COL4A4P53420 AP001267.3-204ENST00000528578 423 ntTSL 3 BASIC5.83□□□□□ -1.48
COL4A4P53420 DNAL1-205ENST00000554339 548 ntTSL 5 BASIC5.83□□□□□ -1.48
COL4A4P53420 AC009117.1-201ENST00000563948 554 ntBASIC5.83□□□□□ -1.48
COL4A4P53420 ATP5J2P6-201ENST00000565203 266 ntBASIC5.83□□□□□ -1.48
COL4A4P53420 RN7SL52P-201ENST00000584271 284 ntBASIC5.83□□□□□ -1.48
COL4A4P53420 AL121989.1-201ENST00000585888 746 ntTSL 3 BASIC5.83□□□□□ -1.48
COL4A4P53420 AC025857.2-201ENST00000602711 238 ntBASIC5.83□□□□□ -1.48
COL4A4P53420 SAMD9L-209ENST00000610760 1221 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
COL4A4P53420 RN7SL722P-201ENST00000617780 284 ntBASIC5.83□□□□□ -1.48
COL4A4P53420 RN7SL565P-201ENST00000618246 284 ntBASIC5.83□□□□□ -1.48
COL4A4P53420 SCN8A-201ENST00000354534 11556 ntAPPRIS P3 TSL 1 (best) BASIC5.83□□□□□ -1.48
COL4A4P53420 OR55B1P-203ENST00000641518 2602 ntBASIC5.83□□□□□ -1.48
COL4A4P53420 PRICKLE2-201ENST00000295902 7918 ntAPPRIS ALT2 TSL 5 BASIC5.83□□□□□ -1.48
COL4A4P53420 CDYL2-207ENST00000570137 8159 ntAPPRIS P2 TSL 1 (best) BASIC5.83□□□□□ -1.48
COL4A4P53420 OR4K1-203ENST00000641429 1358 ntAPPRIS P1 BASIC5.83□□□□□ -1.48
COL4A4P53420 MARVELD2-204ENST00000454295 4376 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
COL4A4P53420 AQP9-201ENST00000219919 3034 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
COL4A4P53420 TMC5-205ENST00000542583 4872 ntAPPRIS ALT2 TSL 2 BASIC5.83□□□□□ -1.48
COL4A4P53420 ADAM29-213ENST00000615367 3386 ntAPPRIS P1 TSL 5 BASIC5.83□□□□□ -1.48
COL4A4P53420 NIT2-201ENST00000394140 7289 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
COL4A4P53420 BMS1-201ENST00000374518 7753 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
COL4A4P53420 FLJ12825-201ENST00000515617 3942 ntTSL 2 BASIC5.83□□□□□ -1.48
COL4A4P53420 AL162456.1-201ENST00000634535 2006 ntBASIC5.83□□□□□ -1.48
COL4A4P53420 TMED10-201ENST00000303575 4127 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
COL4A4P53420 BBIP1-207ENST00000448814 2119 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
COL4A4P53420 PAK3-201ENST00000262836 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC5.83□□□□□ -1.48
COL4A4P53420 PAK3-205ENST00000417227 2196 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
COL4A4P53420 ZSCAN12-201ENST00000361028 5495 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
COL4A4P53420 OR52K1-202ENST00000641528 5456 ntAPPRIS P1 BASIC5.83□□□□□ -1.48
COL4A4P53420 RCAN2-201ENST00000306764 3240 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
COL4A4P53420 MBNL2-201ENST00000343600 4596 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
COL4A4P53420 ADGRL3-207ENST00000507625 4843 ntAPPRIS ALT2 TSL 5 BASIC5.83□□□□□ -1.48
COL4A4P53420 FRS2-209ENST00000550389 6600 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
COL4A4P53420 AC115220.1-201ENST00000330020 1453 ntAPPRIS P1 TSL 3 BASIC5.82□□□□□ -1.48
COL4A4P53420 AL353625.1-202ENST00000366273 571 ntBASIC5.82□□□□□ -1.48
COL4A4P53420 LGALSL-202ENST00000409537 3298 ntTSL 5 BASIC5.82□□□□□ -1.48
COL4A4P53420 RPSAP35-201ENST00000413753 818 ntBASIC5.82□□□□□ -1.48
COL4A4P53420 COX6B1P1-201ENST00000415962 213 ntBASIC5.82□□□□□ -1.48
COL4A4P53420 AL133482.1-201ENST00000415988 498 ntBASIC5.82□□□□□ -1.48
COL4A4P53420 C4BPAP2-201ENST00000428434 478 ntBASIC5.82□□□□□ -1.48
COL4A4P53420 PCBP1-AS1-232ENST00000442040 1111 ntTSL 3 BASIC5.82□□□□□ -1.48
COL4A4P53420 AC093581.1-201ENST00000446411 461 ntTSL 2 BASIC5.82□□□□□ -1.48
COL4A4P53420 LINC01436-201ENST00000457157 1048 ntTSL 2 BASIC5.82□□□□□ -1.48
COL4A4P53420 GIMAP2-202ENST00000474605 309 ntTSL 3 BASIC5.82□□□□□ -1.48
COL4A4P53420 ATXN3-206ENST00000502250 1259 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
COL4A4P53420 GRID2-204ENST00000510992 2739 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
COL4A4P53420 LINC00616-203ENST00000512536 568 ntTSL 4 BASIC5.82□□□□□ -1.48
COL4A4P53420 AAGAB-203ENST00000542650 1015 ntTSL 2 BASIC5.82□□□□□ -1.48
COL4A4P53420 AL121790.1-201ENST00000554829 738 ntTSL 3 BASIC5.82□□□□□ -1.48
COL4A4P53420 AC087286.2-201ENST00000558980 660 ntTSL 3 BASIC5.82□□□□□ -1.48
COL4A4P53420 LINS1-207ENST00000560133 1196 ntTSL 2 BASIC5.82□□□□□ -1.48
COL4A4P53420 AGGF1P7-201ENST00000562369 913 ntBASIC5.82□□□□□ -1.48
COL4A4P53420 AC008738.1-201ENST00000590117 375 ntTSL 5 BASIC5.82□□□□□ -1.48
COL4A4P53420 ELSPBP1-205ENST00000597519 557 ntTSL 3 BASIC5.82□□□□□ -1.48
COL4A4P53420 AP000346.3-201ENST00000622821 210 ntBASIC5.82□□□□□ -1.48
COL4A4P53420 MRPL35-202ENST00000337109 3727 ntAPPRIS P4 TSL 1 (best) BASIC5.82□□□□□ -1.48
COL4A4P53420 NCOA7-201ENST00000229634 2998 ntAPPRIS ALT2 TSL 2 BASIC5.82□□□□□ -1.48
COL4A4P53420 ALMS1-206ENST00000613296 12925 ntAPPRIS P2 TSL 1 (best) BASIC5.82□□□□□ -1.48
COL4A4P53420 KLHL41-201ENST00000284669 2464 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
COL4A4P53420 AP003175.1-201ENST00000641383 6658 ntBASIC5.82□□□□□ -1.48
COL4A4P53420 LINC01478-201ENST00000587877 2068 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
COL4A4P53420 LRRC37A9P-201ENST00000603850 5376 ntBASIC5.82□□□□□ -1.48
COL4A4P53420 PTPN14-201ENST00000366956 12985 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
COL4A4P53420 DPP8-210ENST00000559233 2953 ntAPPRIS P4 TSL 2 BASIC5.82□□□□□ -1.48
COL4A4P53420 KIAA0040-206ENST00000619513 4340 ntTSL 2 BASIC5.82□□□□□ -1.48
COL4A4P53420 AL583808.2-201ENST00000418078 1382 ntTSL 5 BASIC5.82□□□□□ -1.48
COL4A4P53420 ZNF320-205ENST00000595635 6448 ntAPPRIS P1 TSL 2 BASIC5.82□□□□□ -1.48
COL4A4P53420 AC068138.1-201ENST00000412635 217 ntBASIC5.82□□□□□ -1.48
COL4A4P53420 TMEM183AP1-205ENST00000432739 290 ntBASIC5.82□□□□□ -1.48
COL4A4P53420 AC008072.1-201ENST00000434254 824 ntBASIC5.82□□□□□ -1.48
COL4A4P53420 AL596266.1-201ENST00000448132 400 ntBASIC5.82□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 102.3 ms