Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 ECT2-201ENST00000232458 4087 ntAPPRIS P2 TSL 1 (best) BASIC5.56□□□□□ -1.52
HOXA3O43365 CD209-203ENST00000315599 4283 ntAPPRIS P3 TSL 1 (best) BASIC5.56□□□□□ -1.52
HOXA3O43365 PPARGC1A-217ENST00000613098 3210 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
HOXA3O43365 CBLB-205ENST00000407712 1493 ntTSL 2 BASIC5.56□□□□□ -1.52
HOXA3O43365 OVAAL-201ENST00000442621 1489 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
HOXA3O43365 SLC2A14-201ENST00000340749 3699 ntAPPRIS ALT2 TSL 2 BASIC5.56□□□□□ -1.52
HOXA3O43365 ZNF532-222ENST00000591083 5324 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
HOXA3O43365 AKAP5-202ENST00000394718 6487 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
HOXA3O43365 SPAG6-209ENST00000538630 2376 ntTSL 5 BASIC5.56□□□□□ -1.52
HOXA3O43365 CASC19-206ENST00000641028 1430 ntBASIC5.56□□□□□ -1.52
HOXA3O43365 BBOX1-201ENST00000263182 1886 ntAPPRIS P1 TSL 5 BASIC5.56□□□□□ -1.52
HOXA3O43365 ARHGAP28-207ENST00000532996 1859 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
HOXA3O43365 CACNB4-254ENST00000637514 1880 ntTSL 5 BASIC5.56□□□□□ -1.52
HOXA3O43365 OR4F17-203ENST00000618231 2586 ntAPPRIS P1 BASIC5.56□□□□□ -1.52
HOXA3O43365 ZNF254-206ENST00000611359 3982 ntTSL 3 BASIC5.56□□□□□ -1.52
HOXA3O43365 CEBPZ-201ENST00000234170 3463 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
HOXA3O43365 ERVW-1-202ENST00000603053 2763 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
HOXA3O43365 CACNA1E-204ENST00000367567 14757 ntAPPRIS ALT2 TSL 5 BASIC5.55□□□□□ -1.52
HOXA3O43365 AC005614.1-201ENST00000598952 3653 ntBASIC5.55□□□□□ -1.52
HOXA3O43365 MAGEB10-202ENST00000614159 1389 ntAPPRIS P1 BASIC5.55□□□□□ -1.52
HOXA3O43365 KPNB1-203ENST00000540627 2989 ntTSL 2 BASIC5.55□□□□□ -1.52
HOXA3O43365 BRDT-202ENST00000362005 3409 ntAPPRIS P3 TSL 1 (best) BASIC5.55□□□□□ -1.52
HOXA3O43365 ICE2P1-201ENST00000512800 1849 ntBASIC5.55□□□□□ -1.52
HOXA3O43365 PKIA-AS1-202ENST00000522302 2011 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
HOXA3O43365 AC007938.1-201ENST00000562524 2902 ntBASIC5.55□□□□□ -1.52
HOXA3O43365 AQP4-205ENST00000581374 1586 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
HOXA3O43365 NPIPB13-201ENST00000520915 3584 ntAPPRIS P1 TSL 5 BASIC5.55□□□□□ -1.52
HOXA3O43365 AL078595.2-201ENST00000605309 1780 ntBASIC5.55□□□□□ -1.52
HOXA3O43365 OR11G2-203ENST00000641879 4415 ntAPPRIS P1 BASIC5.55□□□□□ -1.52
HOXA3O43365 PRND-201ENST00000305817 3980 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
HOXA3O43365 LYPD6B-202ENST00000409029 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC5.55□□□□□ -1.52
HOXA3O43365 RAI14-208ENST00000506376 3091 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
HOXA3O43365 HBS1L-212ENST00000527578 2618 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
HOXA3O43365 AC001226.2-204ENST00000638101 2645 ntAPPRIS ALT2 TSL 5 BASIC5.55□□□□□ -1.52
HOXA3O43365 UTP15-201ENST00000296792 3687 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
HOXA3O43365 TNPO1-204ENST00000506351 3028 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
HOXA3O43365 AC087359.1-201ENST00000508335 1740 ntBASIC5.55□□□□□ -1.52
HOXA3O43365 MDN1-205ENST00000629399 17400 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
HOXA3O43365 ZNF780A-203ENST00000450241 7500 ntTSL 2 BASIC5.55□□□□□ -1.52
HOXA3O43365 GRIK2-205ENST00000369138 4921 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
HOXA3O43365 ARL14EPL-201ENST00000601302 1914 ntAPPRIS P1 TSL 5 BASIC5.55□□□□□ -1.52
HOXA3O43365 MDM2-203ENST00000299252 966 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
HOXA3O43365 ENSAP3-201ENST00000312710 333 ntBASIC5.55□□□□□ -1.52
HOXA3O43365 OR56B2P-201ENST00000317102 954 ntBASIC5.55□□□□□ -1.52
HOXA3O43365 POU1F1-201ENST00000344265 1149 ntTSL 5 BASIC5.55□□□□□ -1.52
HOXA3O43365 HHLA3-201ENST00000359875 898 ntAPPRIS ALT2 TSL 1 (best) BASIC5.55□□□□□ -1.52
HOXA3O43365 RNU6-543P-201ENST00000362576 108 ntBASIC5.55□□□□□ -1.52
HOXA3O43365 RNU1-5P-201ENST00000362684 144 ntBASIC5.55□□□□□ -1.52
HOXA3O43365 TMCO2-201ENST00000372766 739 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
HOXA3O43365 AC093719.1-202ENST00000392735 373 ntBASIC5.55□□□□□ -1.52
HOXA3O43365 BPIFC-202ENST00000397450 458 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
HOXA3O43365 PIGP-204ENST00000399102 688 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
HOXA3O43365 ATP6V1E1-203ENST00000399798 994 ntTSL 2 BASIC5.55□□□□□ -1.52
HOXA3O43365 AC009965.1-201ENST00000411436 570 ntTSL 4 BASIC5.55□□□□□ -1.52
HOXA3O43365 LINC00362-201ENST00000414345 264 ntTSL 2 BASIC5.55□□□□□ -1.52
HOXA3O43365 AL139421.1-201ENST00000423010 169 ntBASIC5.55□□□□□ -1.52
HOXA3O43365 AL034379.1-201ENST00000423216 253 ntBASIC5.55□□□□□ -1.52
HOXA3O43365 AC017048.2-201ENST00000431455 822 ntTSL 3 BASIC5.55□□□□□ -1.52
HOXA3O43365 AC017002.1-201ENST00000432268 881 ntTSL 5 BASIC5.55□□□□□ -1.52
HOXA3O43365 LINC00595-203ENST00000432742 683 ntTSL 3 BASIC5.55□□□□□ -1.52
HOXA3O43365 MIR4435-2HG-206ENST00000432818 572 ntTSL 5 BASIC5.55□□□□□ -1.52
HOXA3O43365 ATP5F1P1-201ENST00000433775 569 ntBASIC5.55□□□□□ -1.52
HOXA3O43365 AL591503.2-201ENST00000442314 1005 ntBASIC5.55□□□□□ -1.52
HOXA3O43365 GTF3AP5-201ENST00000442645 697 ntBASIC5.55□□□□□ -1.52
HOXA3O43365 AP000936.2-201ENST00000447151 681 ntBASIC5.55□□□□□ -1.52
HOXA3O43365 TPMTP4-201ENST00000450749 678 ntBASIC5.55□□□□□ -1.52
HOXA3O43365 Z99127.1-201ENST00000452442 670 ntTSL 5 BASIC5.55□□□□□ -1.52
HOXA3O43365 ENTPD3-AS1-204ENST00000452768 724 ntTSL 2 BASIC5.55□□□□□ -1.52
HOXA3O43365 AC010149.1-201ENST00000455357 571 ntTSL 4 BASIC5.55□□□□□ -1.52
HOXA3O43365 AL021393.1-201ENST00000456740 539 ntTSL 5 BASIC5.55□□□□□ -1.52
HOXA3O43365 AC011287.2-201ENST00000456809 842 ntTSL 5 BASIC5.55□□□□□ -1.52
HOXA3O43365 PSAT1P4-201ENST00000466500 526 ntBASIC5.55□□□□□ -1.52
HOXA3O43365 RN7SL160P-201ENST00000468558 284 ntBASIC5.55□□□□□ -1.52
HOXA3O43365 AC098818.1-201ENST00000478593 252 ntBASIC5.55□□□□□ -1.52
HOXA3O43365 RN7SL379P-201ENST00000479912 293 ntBASIC5.55□□□□□ -1.52
HOXA3O43365 RHOBTB3-204ENST00000504179 883 ntTSL 5 BASIC5.55□□□□□ -1.52
HOXA3O43365 DSTNP2-201ENST00000504533 515 ntBASIC5.55□□□□□ -1.52
HOXA3O43365 AC008885.2-201ENST00000509506 930 ntBASIC5.55□□□□□ -1.52
HOXA3O43365 AC026785.3-201ENST00000511182 285 ntTSL 2 BASIC5.55□□□□□ -1.52
HOXA3O43365 LINC02144-201ENST00000511417 592 ntTSL 4 BASIC5.55□□□□□ -1.52
HOXA3O43365 RNA5SP318-201ENST00000516352 92 ntBASIC5.55□□□□□ -1.52
HOXA3O43365 RN7SKP183-201ENST00000517169 324 ntBASIC5.55□□□□□ -1.52
HOXA3O43365 AC116917.1-201ENST00000520558 305 ntBASIC5.55□□□□□ -1.52
HOXA3O43365 TMEM68-213ENST00000522576 826 ntTSL 2 BASIC5.55□□□□□ -1.52
HOXA3O43365 NAP1L1P1-201ENST00000524793 1063 ntBASIC5.55□□□□□ -1.52
HOXA3O43365 AP003033.2-201ENST00000528901 805 ntBASIC5.55□□□□□ -1.52
HOXA3O43365 SAA3P-201ENST00000533267 365 ntBASIC5.55□□□□□ -1.52
HOXA3O43365 APAF1-211ENST00000552268 1143 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
HOXA3O43365 AL136018.1-202ENST00000555300 488 ntTSL 5 BASIC5.55□□□□□ -1.52
HOXA3O43365 AC051619.4-201ENST00000560034 292 ntTSL 5 BASIC5.55□□□□□ -1.52
HOXA3O43365 BLID-201ENST00000560104 862 ntAPPRIS P1 BASIC5.55□□□□□ -1.52
HOXA3O43365 AC116553.2-201ENST00000564203 463 ntBASIC5.55□□□□□ -1.52
HOXA3O43365 ACTG1P15-201ENST00000570019 1063 ntBASIC5.55□□□□□ -1.52
HOXA3O43365 MTATP6P3-201ENST00000581686 676 ntBASIC5.55□□□□□ -1.52
HOXA3O43365 TTN-AS1-217ENST00000585625 945 ntTSL 5 BASIC5.55□□□□□ -1.52
HOXA3O43365 PIK3C3-207ENST00000587402 452 ntTSL 3 BASIC5.55□□□□□ -1.52
HOXA3O43365 AC005537.1-201ENST00000588324 1238 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
HOXA3O43365 AC008759.1-201ENST00000589783 983 ntBASIC5.55□□□□□ -1.52
HOXA3O43365 ZRANB2-AS2-215ENST00000596952 624 ntTSL 5 BASIC5.55□□□□□ -1.52
HOXA3O43365 AL589765.6-201ENST00000601909 549 ntBASIC5.55□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 89.5 ms