Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 AL133215.1-201ENST00000447344 342 ntTSL 3 BASIC5.78□□□□□ -1.48
CCDC140Q96MF4 RPL23AP15-201ENST00000450202 459 ntBASIC5.78□□□□□ -1.48
CCDC140Q96MF4 AC234771.3-201ENST00000454984 622 ntBASIC5.78□□□□□ -1.48
CCDC140Q96MF4 LINC02530-201ENST00000457945 894 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
CCDC140Q96MF4 AC009153.1-201ENST00000485799 496 ntBASIC5.78□□□□□ -1.48
CCDC140Q96MF4 AL358832.1-201ENST00000497800 389 ntBASIC5.78□□□□□ -1.48
CCDC140Q96MF4 LINC02377-202ENST00000505436 523 ntTSL 5 BASIC5.78□□□□□ -1.48
CCDC140Q96MF4 SSX8-201ENST00000506270 579 ntBASIC5.78□□□□□ -1.48
CCDC140Q96MF4 AC034206.1-201ENST00000509372 474 ntTSL 3 BASIC5.78□□□□□ -1.48
CCDC140Q96MF4 OSTC-204ENST00000512478 663 ntTSL 5 BASIC5.78□□□□□ -1.48
CCDC140Q96MF4 TRIM60P14-201ENST00000513444 1419 ntBASIC5.78□□□□□ -1.48
CCDC140Q96MF4 MTND5P4-201ENST00000514978 288 ntBASIC5.78□□□□□ -1.48
CCDC140Q96MF4 AC145141.2-201ENST00000518473 501 ntTSL 3 BASIC5.78□□□□□ -1.48
CCDC140Q96MF4 AC011586.1-201ENST00000521055 458 ntTSL 3 BASIC5.78□□□□□ -1.48
CCDC140Q96MF4 AC083973.1-201ENST00000523459 590 ntTSL 2 BASIC5.78□□□□□ -1.48
CCDC140Q96MF4 AP005597.2-201ENST00000526238 341 ntBASIC5.78□□□□□ -1.48
CCDC140Q96MF4 AP003032.1-201ENST00000526730 277 ntTSL 3 BASIC5.78□□□□□ -1.48
CCDC140Q96MF4 DEFB131D-201ENST00000526803 184 ntBASIC5.78□□□□□ -1.48
CCDC140Q96MF4 AL135934.1-201ENST00000527684 537 ntTSL 2 BASIC5.78□□□□□ -1.48
CCDC140Q96MF4 AC090124.2-201ENST00000527727 563 ntTSL 4 BASIC5.78□□□□□ -1.48
CCDC140Q96MF4 AP001267.3-204ENST00000528578 423 ntTSL 3 BASIC5.78□□□□□ -1.48
CCDC140Q96MF4 AP002748.2-201ENST00000528671 348 ntBASIC5.78□□□□□ -1.48
CCDC140Q96MF4 SMCO2-203ENST00000535986 1096 ntAPPRIS P2 TSL 5 BASIC5.78□□□□□ -1.48
CCDC140Q96MF4 AKAP7-208ENST00000537868 1006 ntTSL 5 BASIC5.78□□□□□ -1.48
CCDC140Q96MF4 AC090502.2-201ENST00000549267 280 ntBASIC5.78□□□□□ -1.48
CCDC140Q96MF4 AC023310.2-201ENST00000553844 547 ntBASIC5.78□□□□□ -1.48
CCDC140Q96MF4 AL121579.2-201ENST00000555466 590 ntBASIC5.78□□□□□ -1.48
CCDC140Q96MF4 AL049875.1-202ENST00000556620 857 ntTSL 3 BASIC5.78□□□□□ -1.48
CCDC140Q96MF4 AC130456.5-201ENST00000569345 510 ntTSL 5 BASIC5.78□□□□□ -1.48
CCDC140Q96MF4 AC136618.2-201ENST00000575091 400 ntBASIC5.78□□□□□ -1.48
CCDC140Q96MF4 RN7SL14P-201ENST00000579715 298 ntBASIC5.78□□□□□ -1.48
CCDC140Q96MF4 ZNF667-AS1-209ENST00000601875 495 ntTSL 3 BASIC5.78□□□□□ -1.48
CCDC140Q96MF4 MIR205HG-210ENST00000603283 455 ntTSL 3 BASIC5.78□□□□□ -1.48
CCDC140Q96MF4 AL390058.1-201ENST00000603834 629 ntBASIC5.78□□□□□ -1.48
CCDC140Q96MF4 AL589743.4-201ENST00000610763 586 ntTSL 5 BASIC5.78□□□□□ -1.48
CCDC140Q96MF4 Metazoa_SRP.189-201ENST00000614219 303 ntBASIC5.78□□□□□ -1.48
CCDC140Q96MF4 AC012409.2-201ENST00000619812 751 ntTSL 5 BASIC5.78□□□□□ -1.48
CCDC140Q96MF4 LINC01440-210ENST00000629744 541 ntTSL 5 BASIC5.78□□□□□ -1.48
CCDC140Q96MF4 PSMD5-AS1-213ENST00000640327 3531 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
CCDC140Q96MF4 OR5H6-203ENST00000642105 978 ntBASIC5.78□□□□□ -1.48
CCDC140Q96MF4 CACHD1-201ENST00000290039 5275 ntAPPRIS P1 TSL 5 BASIC5.78□□□□□ -1.48
CCDC140Q96MF4 A2M-201ENST00000318602 4844 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
CCDC140Q96MF4 KRBOX1-202ENST00000418176 2566 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
CCDC140Q96MF4 KLHL4-201ENST00000373114 2445 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
CCDC140Q96MF4 B3GNT2-202ENST00000405767 2436 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
CCDC140Q96MF4 PHTF2-207ENST00000424760 1977 ntTSL 2 BASIC5.78□□□□□ -1.48
CCDC140Q96MF4 DYRK1A-201ENST00000338785 5498 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
CCDC140Q96MF4 WDR89-201ENST00000267522 1687 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
CCDC140Q96MF4 MAPK10-392ENST00000642103 3126 ntAPPRIS P2 BASIC5.78□□□□□ -1.48
CCDC140Q96MF4 HSPA8P17-201ENST00000427029 1382 ntBASIC5.78□□□□□ -1.48
CCDC140Q96MF4 FIGNL1-213ENST00000615084 3368 ntAPPRIS P1 TSL 3 BASIC5.78□□□□□ -1.48
CCDC140Q96MF4 IGSF11-201ENST00000354673 3206 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
CCDC140Q96MF4 OR51E2-201ENST00000396950 2781 ntAPPRIS P1 BASIC5.78□□□□□ -1.48
CCDC140Q96MF4 ZNF841-202ENST00000426391 3620 ntTSL 2 BASIC5.78□□□□□ -1.48
CCDC140Q96MF4 AC090017.1-201ENST00000548612 1779 ntBASIC5.78□□□□□ -1.48
CCDC140Q96MF4 CFHR4-204ENST00000608469 1601 ntTSL 1 (best) BASIC5.77□□□□□ -1.48
CCDC140Q96MF4 LNPEP-202ENST00000395770 3888 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
CCDC140Q96MF4 MDM4-207ENST00000454264 9926 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
CCDC140Q96MF4 C18orf54-206ENST00000620105 5693 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
CCDC140Q96MF4 DIO2-210ENST00000557010 6367 ntAPPRIS P1 TSL 2 BASIC5.77□□□□□ -1.49
CCDC140Q96MF4 PRLR-203ENST00000348262 1339 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
CCDC140Q96MF4 DDX50P1-201ENST00000438163 2400 ntBASIC5.77□□□□□ -1.49
CCDC140Q96MF4 MAPK6-201ENST00000261845 5345 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
CCDC140Q96MF4 BBOX1-204ENST00000528583 1724 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
CCDC140Q96MF4 EIF3L-203ENST00000412331 3220 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
CCDC140Q96MF4 ADAM2-201ENST00000265708 2672 ntAPPRIS P3 TSL 1 (best) BASIC5.77□□□□□ -1.49
CCDC140Q96MF4 FAM81B-201ENST00000283357 1560 ntAPPRIS P2 TSL 1 (best) BASIC5.77□□□□□ -1.49
CCDC140Q96MF4 EMCN-202ENST00000305864 1575 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
CCDC140Q96MF4 CRYZ-204ENST00000370872 1592 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
CCDC140Q96MF4 AL358975.1-203ENST00000413352 2932 ntTSL 3 BASIC5.77□□□□□ -1.49
CCDC140Q96MF4 JCHAIN-206ENST00000543780 1406 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
CCDC140Q96MF4 PHACTR2P1-201ENST00000605639 1414 ntBASIC5.77□□□□□ -1.49
CCDC140Q96MF4 HHIP-201ENST00000296575 10072 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
CCDC140Q96MF4 OR7A10-202ENST00000641129 1847 ntAPPRIS P1 BASIC5.77□□□□□ -1.49
CCDC140Q96MF4 YOD1-202ENST00000367084 6291 ntTSL 2 BASIC5.77□□□□□ -1.49
CCDC140Q96MF4 XIAP-205ENST00000434753 8415 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
CCDC140Q96MF4 IFIT2-202ENST00000611722 3038 ntAPPRIS ALT2 TSL 5 BASIC5.77□□□□□ -1.49
CCDC140Q96MF4 LYPD6B-201ENST00000280115 1100 ntAPPRIS ALT2 TSL 5 BASIC5.77□□□□□ -1.49
CCDC140Q96MF4 THAP9-201ENST00000302236 3808 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
CCDC140Q96MF4 OR10A2-201ENST00000307322 1053 ntAPPRIS P1 BASIC5.77□□□□□ -1.49
CCDC140Q96MF4 IL17F-201ENST00000336123 850 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
CCDC140Q96MF4 DEFB119-201ENST00000339144 484 ntAPPRIS ALT2 TSL 1 (best) BASIC5.77□□□□□ -1.49
CCDC140Q96MF4 PPIAP22-201ENST00000358455 498 ntBASIC5.77□□□□□ -1.49
CCDC140Q96MF4 U3.1-201ENST00000362500 215 ntBASIC5.77□□□□□ -1.49
CCDC140Q96MF4 RNA5SP301-201ENST00000362537 121 ntBASIC5.77□□□□□ -1.49
CCDC140Q96MF4 ANP32E-202ENST00000369115 708 ntTSL 3 BASIC5.77□□□□□ -1.49
CCDC140Q96MF4 COQ3-202ENST00000369240 646 ntTSL 5 BASIC5.77□□□□□ -1.49
CCDC140Q96MF4 IGBP1-AS2-201ENST00000403371 513 ntTSL 3 BASIC5.77□□□□□ -1.49
CCDC140Q96MF4 BTF3P7-201ENST00000407097 488 ntBASIC5.77□□□□□ -1.49
CCDC140Q96MF4 AC004014.1-201ENST00000413406 538 ntTSL 4 BASIC5.77□□□□□ -1.49
CCDC140Q96MF4 HMGB3P23-201ENST00000414981 585 ntBASIC5.77□□□□□ -1.49
CCDC140Q96MF4 MEAF6P1-201ENST00000416092 327 ntBASIC5.77□□□□□ -1.49
CCDC140Q96MF4 OFD1P18Y-201ENST00000420889 959 ntBASIC5.77□□□□□ -1.49
CCDC140Q96MF4 AC007394.1-201ENST00000421941 531 ntBASIC5.77□□□□□ -1.49
CCDC140Q96MF4 VDAC1P6-201ENST00000430062 855 ntBASIC5.77□□□□□ -1.49
CCDC140Q96MF4 AL049749.1-201ENST00000430281 632 ntTSL 2 BASIC5.77□□□□□ -1.49
CCDC140Q96MF4 AC000362.1-201ENST00000433725 425 ntBASIC5.77□□□□□ -1.49
CCDC140Q96MF4 Z83313.1-201ENST00000433780 718 ntBASIC5.77□□□□□ -1.49
CCDC140Q96MF4 OR5G3-201ENST00000435756 929 ntAPPRIS P1 BASIC5.77□□□□□ -1.49
CCDC140Q96MF4 Z98949.3-201ENST00000436423 472 ntTSL 5 BASIC5.77□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 99.8 ms