Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 AC027343.2-201ENST00000513219 343 ntTSL 3 BASIC5.72□□□□□ -1.49
VPS39Q96JC1 NSMCE2-202ENST00000517315 996 ntTSL 3 BASIC5.72□□□□□ -1.49
VPS39Q96JC1 AC020937.1-201ENST00000519677 1013 ntBASIC5.72□□□□□ -1.49
VPS39Q96JC1 AP003472.2-201ENST00000523554 639 ntTSL 3 BASIC5.72□□□□□ -1.49
VPS39Q96JC1 IGHVIII-76-1-201ENST00000523776 286 ntBASIC5.72□□□□□ -1.49
VPS39Q96JC1 AC110275.1-201ENST00000534420 623 ntAPPRIS P1 TSL 4 BASIC5.72□□□□□ -1.49
VPS39Q96JC1 AC137627.1-201ENST00000545761 289 ntBASIC5.72□□□□□ -1.49
VPS39Q96JC1 AC139697.1-201ENST00000548429 745 ntBASIC5.72□□□□□ -1.49
VPS39Q96JC1 AL845552.1-201ENST00000556820 323 ntBASIC5.72□□□□□ -1.49
VPS39Q96JC1 AC002310.3-201ENST00000569728 723 ntBASIC5.72□□□□□ -1.49
VPS39Q96JC1 SNORA35B-201ENST00000607417 129 ntBASIC5.72□□□□□ -1.49
VPS39Q96JC1 AP001437.1-201ENST00000608783 456 ntBASIC5.72□□□□□ -1.49
VPS39Q96JC1 MIR6793-201ENST00000612376 63 ntBASIC5.72□□□□□ -1.49
VPS39Q96JC1 AL683826.1-201ENST00000624104 627 ntBASIC5.72□□□□□ -1.49
VPS39Q96JC1 ALB-220ENST00000621628 1606 ntTSL 5 BASIC5.72□□□□□ -1.49
VPS39Q96JC1 AL358975.1-203ENST00000413352 2932 ntTSL 3 BASIC5.72□□□□□ -1.49
VPS39Q96JC1 NELL2-205ENST00000452445 3196 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
VPS39Q96JC1 NDRG3-201ENST00000349004 2964 ntAPPRIS P4 TSL 1 (best) BASIC5.72□□□□□ -1.49
VPS39Q96JC1 AC092451.3-201ENST00000625067 1343 ntBASIC5.72□□□□□ -1.49
VPS39Q96JC1 AF287957.1-201ENST00000607368 1595 ntBASIC5.72□□□□□ -1.49
VPS39Q96JC1 AC010099.4-201ENST00000424515 1453 ntTSL 5 BASIC5.71□□□□□ -1.49
VPS39Q96JC1 AC104966.1-201ENST00000467010 1464 ntBASIC5.71□□□□□ -1.49
VPS39Q96JC1 PRUNE2-207ENST00000428286 12437 ntTSL 5 BASIC5.71□□□□□ -1.49
VPS39Q96JC1 PDZK1P1-202ENST00000425209 1350 ntBASIC5.71□□□□□ -1.5
VPS39Q96JC1 PLS3-201ENST00000289290 2277 ntTSL 2 BASIC5.71□□□□□ -1.5
VPS39Q96JC1 HACD3-209ENST00000566511 1782 ntTSL 5 BASIC5.71□□□□□ -1.5
VPS39Q96JC1 MAMDC2-AS1-201ENST00000377178 1504 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
VPS39Q96JC1 IGF2BP2-AS1-202ENST00000456447 1531 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
VPS39Q96JC1 C5-201ENST00000223642 5465 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
VPS39Q96JC1 NUDT6-202ENST00000339154 1065 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
VPS39Q96JC1 ADPRM-201ENST00000379774 1209 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
VPS39Q96JC1 TRAV8-7-201ENST00000390456 341 ntAPPRIS P1 BASIC5.71□□□□□ -1.5
VPS39Q96JC1 TRDC-201ENST00000390477 720 ntAPPRIS P1 BASIC5.71□□□□□ -1.5
VPS39Q96JC1 AL357752.1-201ENST00000412817 349 ntBASIC5.71□□□□□ -1.5
VPS39Q96JC1 CASP5-205ENST00000444749 1237 ntAPPRIS P1 TSL 2 BASIC5.71□□□□□ -1.5
VPS39Q96JC1 AL354793.1-201ENST00000446028 713 ntTSL 3 BASIC5.71□□□□□ -1.5
VPS39Q96JC1 PPIAP27-201ENST00000453800 265 ntBASIC5.71□□□□□ -1.5
VPS39Q96JC1 MTND6P32-201ENST00000457611 483 ntBASIC5.71□□□□□ -1.5
VPS39Q96JC1 RN7SL649P-201ENST00000496974 275 ntBASIC5.71□□□□□ -1.5
VPS39Q96JC1 AP001960.1-201ENST00000506494 658 ntBASIC5.71□□□□□ -1.5
VPS39Q96JC1 AC097486.1-201ENST00000515331 210 ntBASIC5.71□□□□□ -1.5
VPS39Q96JC1 RNA5SP340-201ENST00000517132 107 ntBASIC5.71□□□□□ -1.5
VPS39Q96JC1 ARL6IP1P3-201ENST00000524544 560 ntBASIC5.71□□□□□ -1.5
VPS39Q96JC1 CASP5-209ENST00000531367 879 ntTSL 5 BASIC5.71□□□□□ -1.5
VPS39Q96JC1 AP001992.1-201ENST00000533875 723 ntTSL 5 BASIC5.71□□□□□ -1.5
VPS39Q96JC1 AC084121.1-201ENST00000533882 835 ntBASIC5.71□□□□□ -1.5
VPS39Q96JC1 AP002518.1-201ENST00000534904 3837 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
VPS39Q96JC1 AC006530.1-201ENST00000555980 571 ntBASIC5.71□□□□□ -1.5
VPS39Q96JC1 AL162464.1-201ENST00000557642 554 ntTSL 5 BASIC5.71□□□□□ -1.5
VPS39Q96JC1 AC026826.3-201ENST00000561747 158 ntBASIC5.71□□□□□ -1.5
VPS39Q96JC1 AP001381.1-201ENST00000584109 534 ntTSL 5 BASIC5.71□□□□□ -1.5
VPS39Q96JC1 AC005757.1-201ENST00000591432 472 ntTSL 4 BASIC5.71□□□□□ -1.5
VPS39Q96JC1 LINC02073-202ENST00000592081 535 ntTSL 4 BASIC5.71□□□□□ -1.5
VPS39Q96JC1 AC091167.5-201ENST00000605689 894 ntBASIC5.71□□□□□ -1.5
VPS39Q96JC1 MIR6780B-201ENST00000610307 79 ntBASIC5.71□□□□□ -1.5
VPS39Q96JC1 MIR7109-201ENST00000613748 65 ntBASIC5.71□□□□□ -1.5
VPS39Q96JC1 AC011287.1-204ENST00000640300 1213 ntTSL 5 BASIC5.71□□□□□ -1.5
VPS39Q96JC1 C15orf54-202ENST00000625107 3078 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
VPS39Q96JC1 ADAM29-203ENST00000445694 3244 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
VPS39Q96JC1 SPARCL1-202ENST00000418378 2994 ntAPPRIS P1 TSL 5 BASIC5.71□□□□□ -1.5
VPS39Q96JC1 KCNT2-203ENST00000451324 3146 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
VPS39Q96JC1 CD96-203ENST00000438817 1565 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
VPS39Q96JC1 ST8SIA4-201ENST00000231461 6303 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
VPS39Q96JC1 RGS17-202ENST00000367225 7773 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
VPS39Q96JC1 AL162726.3-201ENST00000637606 1301 ntTSL 5 BASIC5.71□□□□□ -1.5
VPS39Q96JC1 ATRX-202ENST00000395603 10218 ntAPPRIS ALT2 TSL 1 (best) BASIC5.7□□□□□ -1.5
VPS39Q96JC1 ARHGAP21-202ENST00000376410 3526 ntTSL 5 BASIC5.7□□□□□ -1.5
VPS39Q96JC1 PTPRO-210ENST00000544244 3978 ntAPPRIS ALT2 TSL 2 BASIC5.7□□□□□ -1.5
VPS39Q96JC1 DDHD2-202ENST00000517385 4113 ntTSL 2 BASIC5.7□□□□□ -1.5
VPS39Q96JC1 ZFX-211ENST00000539115 6801 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
VPS39Q96JC1 EIF3M-208ENST00000531120 5051 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
VPS39Q96JC1 COX6B1P3-201ENST00000312310 260 ntBASIC5.7□□□□□ -1.5
VPS39Q96JC1 OR4S2-201ENST00000312422 936 ntAPPRIS P1 BASIC5.7□□□□□ -1.5
VPS39Q96JC1 AL353751.1-201ENST00000354541 495 ntTSL 3 BASIC5.7□□□□□ -1.5
VPS39Q96JC1 AC090616.2-201ENST00000358484 431 ntTSL 3 BASIC5.7□□□□□ -1.5
VPS39Q96JC1 RNU1-65P-201ENST00000363919 148 ntBASIC5.7□□□□□ -1.5
VPS39Q96JC1 ZRSR2-202ENST00000380308 744 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
VPS39Q96JC1 HIST1H3PS1-201ENST00000404612 417 ntBASIC5.7□□□□□ -1.5
VPS39Q96JC1 LYST-AS1-201ENST00000412098 521 ntTSL 3 BASIC5.7□□□□□ -1.5
VPS39Q96JC1 FO393401.1-203ENST00000416260 486 ntTSL 5 BASIC5.7□□□□□ -1.5
VPS39Q96JC1 RNF10P1-201ENST00000418589 369 ntBASIC5.7□□□□□ -1.5
VPS39Q96JC1 BX284632.2-201ENST00000421091 399 ntBASIC5.7□□□□□ -1.5
VPS39Q96JC1 PLA2G12AP2-201ENST00000424744 264 ntBASIC5.7□□□□□ -1.5
VPS39Q96JC1 AL512605.1-202ENST00000441919 381 ntBASIC5.7□□□□□ -1.5
VPS39Q96JC1 MEOX2-AS1-201ENST00000442176 697 ntTSL 3 BASIC5.7□□□□□ -1.5
VPS39Q96JC1 AL359955.2-201ENST00000445380 353 ntBASIC5.7□□□□□ -1.5
VPS39Q96JC1 AL021937.3-201ENST00000446543 361 ntTSL 2 BASIC5.7□□□□□ -1.5
VPS39Q96JC1 SNORD125-201ENST00000459538 96 ntBASIC5.7□□□□□ -1.5
VPS39Q96JC1 AC068228.1-201ENST00000461723 211 ntBASIC5.7□□□□□ -1.5
VPS39Q96JC1 AC104339.1-201ENST00000465478 348 ntBASIC5.7□□□□□ -1.5
VPS39Q96JC1 RPS17P5-201ENST00000498293 408 ntBASIC5.7□□□□□ -1.5
VPS39Q96JC1 RBBP4P1-201ENST00000502424 1276 ntBASIC5.7□□□□□ -1.5
VPS39Q96JC1 LINC00483-204ENST00000502517 940 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
VPS39Q96JC1 AC012629.1-201ENST00000503953 342 ntTSL 3 BASIC5.7□□□□□ -1.5
VPS39Q96JC1 LDHAP1-201ENST00000509421 992 ntBASIC5.7□□□□□ -1.5
VPS39Q96JC1 ZBED3-AS1-209ENST00000512213 681 ntTSL 3 BASIC5.7□□□□□ -1.5
VPS39Q96JC1 AC139365.2-201ENST00000517972 253 ntBASIC5.7□□□□□ -1.5
VPS39Q96JC1 TPT1-AS1-207ENST00000520310 563 ntTSL 5 BASIC5.7□□□□□ -1.5
VPS39Q96JC1 IGLV3-30-201ENST00000524362 298 ntBASIC5.7□□□□□ -1.5
VPS39Q96JC1 AP003031.2-204ENST00000527219 567 ntTSL 4 BASIC5.7□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 98.7 ms