Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 AC135983.2-201ENST00000604301 628 ntTSL 5 BASIC5.83□□□□□ -1.48
COL28A1Q2UY09 AC073111.2-201ENST00000605657 1075 ntBASIC5.83□□□□□ -1.48
COL28A1Q2UY09 AC112493.1-201ENST00000609836 303 ntTSL 3 BASIC5.83□□□□□ -1.48
COL28A1Q2UY09 AC063952.1-203ENST00000634410 658 ntBASIC5.83□□□□□ -1.48
COL28A1Q2UY09 AC005972.4-201ENST00000636248 1131 ntTSL 5 BASIC5.83□□□□□ -1.48
COL28A1Q2UY09 FRK-201ENST00000606080 13230 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
COL28A1Q2UY09 UPRT-207ENST00000530743 1636 ntTSL 2 BASIC5.83□□□□□ -1.48
COL28A1Q2UY09 PHEX-AS1-201ENST00000424650 1906 ntTSL 2 BASIC5.83□□□□□ -1.48
COL28A1Q2UY09 AL136984.1-201ENST00000607611 1893 ntBASIC5.83□□□□□ -1.48
COL28A1Q2UY09 FBXO25-204ENST00000382824 10386 ntAPPRIS P4 TSL 1 (best) BASIC5.83□□□□□ -1.48
COL28A1Q2UY09 IKZF3-210ENST00000377958 1837 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
COL28A1Q2UY09 ZNF644-204ENST00000370440 5702 ntAPPRIS P1 TSL 5 BASIC5.83□□□□□ -1.48
COL28A1Q2UY09 MYPN-202ENST00000358913 6013 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
COL28A1Q2UY09 CXCL8-201ENST00000307407 1705 ntAPPRIS P2 TSL 1 (best) BASIC5.82□□□□□ -1.48
COL28A1Q2UY09 PBRM1-207ENST00000409767 4849 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
COL28A1Q2UY09 BTLA-201ENST00000334529 3213 ntAPPRIS P3 TSL 1 (best) BASIC5.82□□□□□ -1.48
COL28A1Q2UY09 AC018628.1-201ENST00000624147 3819 ntBASIC5.82□□□□□ -1.48
COL28A1Q2UY09 ELMO1-207ENST00000442504 3154 ntAPPRIS P1 TSL 2 BASIC5.82□□□□□ -1.48
COL28A1Q2UY09 LINC01415-201ENST00000587320 4071 ntTSL 2 BASIC5.82□□□□□ -1.48
COL28A1Q2UY09 ZNF615-204ENST00000594083 4020 ntAPPRIS ALT2 TSL 1 (best) BASIC5.82□□□□□ -1.48
COL28A1Q2UY09 AC092724.1-201ENST00000624623 3397 ntBASIC5.82□□□□□ -1.48
COL28A1Q2UY09 SLC12A6-218ENST00000560611 4239 ntAPPRIS ALT1 TSL 1 (best) BASIC5.82□□□□□ -1.48
COL28A1Q2UY09 CDK14-206ENST00000436577 4787 ntTSL 2 BASIC5.82□□□□□ -1.48
COL28A1Q2UY09 OR51I2-202ENST00000641930 3302 ntAPPRIS P1 BASIC5.82□□□□□ -1.48
COL28A1Q2UY09 EOGT-208ENST00000540764 1584 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
COL28A1Q2UY09 OR6K3-202ENST00000368146 996 ntBASIC5.82□□□□□ -1.48
COL28A1Q2UY09 SSX3-202ENST00000376893 800 ntTSL 2 BASIC5.82□□□□□ -1.48
COL28A1Q2UY09 RNU11-6P-201ENST00000391127 133 ntBASIC5.82□□□□□ -1.48
COL28A1Q2UY09 AC003035.1-201ENST00000391359 544 ntTSL 3 BASIC5.82□□□□□ -1.48
COL28A1Q2UY09 NRG4-201ENST00000394907 1159 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
COL28A1Q2UY09 RNU2-72P-201ENST00000411175 163 ntBASIC5.82□□□□□ -1.48
COL28A1Q2UY09 AF015720.1-201ENST00000412240 349 ntTSL 3 BASIC5.82□□□□□ -1.48
COL28A1Q2UY09 ICA1L-206ENST00000418208 602 ntTSL 4 BASIC5.82□□□□□ -1.48
COL28A1Q2UY09 NPM1P26-201ENST00000426339 738 ntBASIC5.82□□□□□ -1.48
COL28A1Q2UY09 AL583785.1-201ENST00000428006 512 ntTSL 2 BASIC5.82□□□□□ -1.48
COL28A1Q2UY09 OR3D1P-201ENST00000438288 955 ntBASIC5.82□□□□□ -1.48
COL28A1Q2UY09 LINC00446-202ENST00000438327 357 ntTSL 3 BASIC5.82□□□□□ -1.48
COL28A1Q2UY09 GSTA7P-201ENST00000438425 448 ntBASIC5.82□□□□□ -1.48
COL28A1Q2UY09 NPSR1-AS1-206ENST00000439852 710 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
COL28A1Q2UY09 AC105271.1-201ENST00000442876 497 ntTSL 3 BASIC5.82□□□□□ -1.48
COL28A1Q2UY09 RAB28P3-201ENST00000448325 597 ntBASIC5.82□□□□□ -1.48
COL28A1Q2UY09 AC079896.1-201ENST00000455845 488 ntTSL 3 BASIC5.82□□□□□ -1.48
COL28A1Q2UY09 UBA52P7-201ENST00000486088 380 ntBASIC5.82□□□□□ -1.48
COL28A1Q2UY09 AC008953.1-201ENST00000497334 318 ntBASIC5.82□□□□□ -1.48
COL28A1Q2UY09 AC105460.2-202ENST00000502936 825 ntTSL 2 BASIC5.82□□□□□ -1.48
COL28A1Q2UY09 LINC02512-201ENST00000509548 429 ntTSL 5 BASIC5.82□□□□□ -1.48
COL28A1Q2UY09 AC074087.1-201ENST00000512059 724 ntBASIC5.82□□□□□ -1.48
COL28A1Q2UY09 LINC02454-201ENST00000539116 589 ntTSL 4 BASIC5.82□□□□□ -1.48
COL28A1Q2UY09 AP000619.2-201ENST00000546014 969 ntBASIC5.82□□□□□ -1.48
COL28A1Q2UY09 AL121579.2-201ENST00000555466 590 ntBASIC5.82□□□□□ -1.48
COL28A1Q2UY09 AC008914.1-201ENST00000576302 797 ntTSL 3 BASIC5.82□□□□□ -1.48
COL28A1Q2UY09 AC005244.1-201ENST00000582566 339 ntBASIC5.82□□□□□ -1.48
COL28A1Q2UY09 AC114684.1-201ENST00000587659 352 ntTSL 3 BASIC5.82□□□□□ -1.48
COL28A1Q2UY09 AL109935.2-201ENST00000587737 395 ntTSL 5 BASIC5.82□□□□□ -1.48
COL28A1Q2UY09 ADAD1P2-201ENST00000588476 646 ntBASIC5.82□□□□□ -1.48
COL28A1Q2UY09 AC005332.4-201ENST00000592752 579 ntBASIC5.82□□□□□ -1.48
COL28A1Q2UY09 AC006504.7-201ENST00000592806 924 ntTSL 3 BASIC5.82□□□□□ -1.48
COL28A1Q2UY09 LINC01999-201ENST00000592917 646 ntTSL 2 BASIC5.82□□□□□ -1.48
COL28A1Q2UY09 IGLVIVOR22-1-201ENST00000603243 397 ntBASIC5.82□□□□□ -1.48
COL28A1Q2UY09 AL353804.2-201ENST00000603360 347 ntTSL 5 BASIC5.82□□□□□ -1.48
COL28A1Q2UY09 RPSAP73-201ENST00000614820 330 ntBASIC5.82□□□□□ -1.48
COL28A1Q2UY09 Xist_exon4.1-201ENST00000615964 126 ntBASIC5.82□□□□□ -1.48
COL28A1Q2UY09 IGF2BP3-218ENST00000619562 2126 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
COL28A1Q2UY09 AL356490.1-201ENST00000623079 479 ntBASIC5.82□□□□□ -1.48
COL28A1Q2UY09 AC005154.1-203ENST00000626245 451 ntTSL 5 BASIC5.82□□□□□ -1.48
COL28A1Q2UY09 SATB1-AS1-243ENST00000627546 589 ntTSL 5 BASIC5.82□□□□□ -1.48
COL28A1Q2UY09 MAPK10-350ENST00000641777 965 ntBASIC5.82□□□□□ -1.48
COL28A1Q2UY09 ASXL2-203ENST00000435504 12878 ntAPPRIS P5 TSL 5 BASIC5.82□□□□□ -1.48
COL28A1Q2UY09 NOS1-201ENST00000317775 12158 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
COL28A1Q2UY09 INTS12-211ENST00000618810 1502 ntAPPRIS P1 TSL 5 BASIC5.82□□□□□ -1.48
COL28A1Q2UY09 GLYATL1-201ENST00000300079 2068 ntAPPRIS P3 TSL 2 BASIC5.82□□□□□ -1.48
COL28A1Q2UY09 AC067956.1-201ENST00000414512 2062 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
COL28A1Q2UY09 ADGB-205ENST00000397944 5325 ntAPPRIS P5 TSL 5 BASIC5.82□□□□□ -1.48
COL28A1Q2UY09 DCTN5-201ENST00000300087 11011 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
COL28A1Q2UY09 PEX5L-202ENST00000392649 8540 ntAPPRIS ALT2 TSL 5 BASIC5.82□□□□□ -1.48
COL28A1Q2UY09 SDAD1-203ENST00000395711 2513 ntTSL 2 BASIC5.82□□□□□ -1.48
COL28A1Q2UY09 FANCD2-203ENST00000419585 5185 ntAPPRIS ALT2 TSL 1 (best) BASIC5.82□□□□□ -1.48
COL28A1Q2UY09 ANKRD46-204ENST00000519597 2779 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
COL28A1Q2UY09 RASSF8-201ENST00000282884 1994 ntAPPRIS P1 TSL 2 BASIC5.82□□□□□ -1.48
COL28A1Q2UY09 CLEC12B-202ENST00000396502 3029 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
COL28A1Q2UY09 THAP6-201ENST00000311638 3549 ntAPPRIS P3 TSL 1 (best) BASIC5.82□□□□□ -1.48
COL28A1Q2UY09 SREK1IP1-204ENST00000513458 6876 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
COL28A1Q2UY09 AC098798.1-201ENST00000503998 1447 ntTSL 5 BASIC5.82□□□□□ -1.48
COL28A1Q2UY09 PRG4-204ENST00000445192 5044 ntAPPRIS P3 TSL 5 BASIC5.82□□□□□ -1.48
COL28A1Q2UY09 CDC7-201ENST00000234626 3173 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
COL28A1Q2UY09 RBMY1HP-201ENST00000382759 1389 ntBASIC5.81□□□□□ -1.48
COL28A1Q2UY09 AC119674.1-202ENST00000641333 1860 ntBASIC5.81□□□□□ -1.48
COL28A1Q2UY09 MPHOSPH9-220ENST00000606320 6351 ntAPPRIS P2 TSL 5 BASIC5.81□□□□□ -1.48
COL28A1Q2UY09 CR1-201ENST00000367049 7470 ntAPPRIS P1 TSL 5 BASIC5.81□□□□□ -1.48
COL28A1Q2UY09 SLC38A9-218ENST00000512595 1756 ntTSL 2 BASIC5.81□□□□□ -1.48
COL28A1Q2UY09 PUS3-203ENST00000530811 1792 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
COL28A1Q2UY09 RBMS2-201ENST00000262031 8382 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
COL28A1Q2UY09 SNORA40.4-201ENST00000390971 128 ntBASIC5.81□□□□□ -1.48
COL28A1Q2UY09 AL354890.1-201ENST00000413730 346 ntBASIC5.81□□□□□ -1.48
COL28A1Q2UY09 RPS26P38-201ENST00000414476 348 ntBASIC5.81□□□□□ -1.48
COL28A1Q2UY09 RPS17P17-201ENST00000419392 409 ntBASIC5.81□□□□□ -1.48
COL28A1Q2UY09 EIF2S2P3-201ENST00000428356 999 ntBASIC5.81□□□□□ -1.48
COL28A1Q2UY09 MTND4LP14-201ENST00000429447 288 ntBASIC5.81□□□□□ -1.48
COL28A1Q2UY09 AL021408.1-201ENST00000430428 552 ntTSL 4 BASIC5.81□□□□□ -1.48
COL28A1Q2UY09 ARL5AP3-201ENST00000439327 386 ntBASIC5.81□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 109.7 ms